IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4211	 71.65	0	4464468..4465109	+	213	119870268	-	Mkms_4238	-	MOSC domain-containing protein
4212	 68.75	0	4465111..4466166	-	351	119870269	-	Mkms_4239	-	dihydrodipicolinate reductase
4213	 66.67	0	4466244..4467437	+	397	119870270	-	Mkms_4240	-	lipid-transfer protein
4214	 64.47	-1	4467564..4467881	+	105	119870271	-	Mkms_4241	-	hypothetical protein
4215	 67.68	0	4467939..4469315	-	458	119870272	-	Mkms_4242	-	sodium:dicarboxylate symporter
4216	 70.47	0	4469408..4470985	+	525	119870273	-	Mkms_4243	-	signal transduction histidine kinase regulating citrate/malate metabolism
4217	 72.36	+1	4470982..4471683	+	233	119870274	-	Mkms_4244	-	Fis family transcriptional regulator
4218	 70.96	0	4471680..4472726	-	348	119870275	-	Mkms_4245	-	hypothetical protein
4219	 73.25	+1	4473192..4473890	-	232	119870276	-	Mkms_4246	-	peptidoglycan binding domain-containing protein
4220	 73.25	+1	4473950..4474405	-	151	119870277	-	Mkms_4247	-	cupin 2 domain-containing protein
4221	 69.36	0	4474424..4475500	-	358	119870278	-	Mkms_4248	-	putative esterase
4222	 71.32	0	4475593..4476966	-	457	119870279	-	Mkms_4249	-	hypothetical protein
4223	 67.42	0	4477054..4477317	-	87	119870280	-	Mkms_4250	-	hypothetical protein
4224	 69.04	0	4477314..4478744	-	476	119870281	-	Mkms_4251	-	permease for cytosine/purines, uracil, thiamine, allantoin
4225	 67.53	0	4478898..4479704	+	268	119870282	-	Mkms_4252	-	M15D family D-Ala-D-Ala dipeptidase VanX
4226	 70.23	0	4479690..4481483	-	597	119870283	-	Mkms_4253	-	hypothetical protein
4227	 70.72	0	4481542..4482231	-	229	119870284	-	Mkms_4254	-	cation efflux protein
4228	 69.49	0	4482231..4482584	-	117	119870285	-	Mkms_4255	-	ArsR family transcriptional regulator
4229	 65.99	0	4482848..4483435	+	195	119870286	-	Mkms_4256	-	L-2,4-diaminobutyric acid acetyltransferase
4230	 65.04	-1	4483457..4484746	+	429	119870287	-	Mkms_4257	-	diaminobutyrate--2-oxoglutarate aminotransferase
4231	 64.87	-1	4484778..4485167	+	129	119870288	ectC	Mkms_4258	-	L-ectoine synthase
4232	 67.00	0	4485167..4486066	+	299	119870289	-	Mkms_4259	-	ectoine hydroxylase
4233	 65.69	0	4486137..4486442	+	101	119870290	-	Mkms_4260	-	hypothetical protein
4234	 70.45	0	4486460..4487119	-	219	119870291	-	Mkms_4261	-	superoxide dismutase, copper/zinc binding
4235	 69.44	0	4487237..4487812	+	191	119870292	-	Mkms_4262	-	hypothetical protein
4236	 69.73	0	4487918..4489027	+	369	119870293	-	Mkms_4263	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
4237	 68.50	0	4489024..4490280	+	418	119870294	-	Mkms_4264	-	major facilitator superfamily transporter
4238	 71.60	0	4490277..4490702	-	141	119870295	-	Mkms_4265	-	rhodanese domain-containing protein
4239	 71.14	0	4490723..4492042	-	439	119870296	-	Mkms_4266	-	Cl- channel, voltage-gated family protein
4240	 68.33	0	4492089..4493354	-	421	119870297	-	Mkms_4267	-	cytochrome P450
4241	 65.00	-1	4493359..4493598	-	79	119870298	-	Mkms_4268	-	hypothetical protein
4242	 69.97	0	4493678..4494283	+	201	119870299	-	Mkms_4269	-	TetR family transcriptional regulator
4243	 58.85	-2	4494258..4494500	+	80	119870300	-	Mkms_4270	-	hypothetical protein
4244	 63.17	-1	4494637..4494951	+	104	119870301	-	Mkms_4271	-	hypothetical protein
4245	 68.72	0	4495331..4496158	-	275	119870302	-	Mkms_4272	-	alpha/beta hydrolase fold
4246	 66.37	0	4496264..4496596	-	110	119870303	-	Mkms_4273	-	hypothetical protein
4247	 69.37	0	4496926..4497258	-	110	119870304	-	Mkms_4274	-	hypothetical protein
4248	 62.59	-1	4497832..4498689	+	285	119870305	-	Mkms_4275	-	hypothetical protein
4249	 65.66	0	4498857..4499252	-	131	119870306	-	Mkms_4276	-	hypothetical protein
4250	 64.82	-1	4499273..4500031	-	252	119870307	-	Mkms_4277	-	methyltransferase type 11
4251	 68.89	0	4500174..4501073	+	299	119870308	-	Mkms_4278	-	hypothetical protein
4252	 68.69	0	4501042..4501833	-	263	119870309	-	Mkms_4279	-	short-chain dehydrogenase/reductase SDR
4253	 65.39	0	4502002..4502940	-	312	119870310	-	Mkms_4280	-	ribonucleotide-diphosphate reductase subunit beta
4254	 68.12	0	4502937..4503626	-	229	119870311	-	Mkms_4281	-	TetR family transcriptional regulator
4255	 70.93	0	4503759..4505165	-	468	119870312	-	Mkms_4282	-	carboxylesterase, type B
4256	 67.99	0	4505158..4506066	-	302	119870313	-	Mkms_4283	-	beta-lactamase domain-containing protein
4257	 68.62	0	4506166..4507035	+	289	119870314	-	Mkms_4284	-	XRE family transcriptional regulator
4258	 68.18	0	4507048..4507443	-	131	119870315	-	Mkms_4285	-	hypothetical protein
4259	 60.00	-2	4507466..4507930	-	154	119870316	-	Mkms_4286	-	hypothetical protein
4260	 69.94	0	4508302..4509552	-	416	119870317	-	Mkms_4287	-	major facilitator superfamily transporter
4261	 64.41	-1	4509575..4510240	-	221	119870318	-	Mkms_4288	-	TetR family transcriptional regulator
4262	 65.83	0	4510357..4511670	+	437	119870319	-	Mkms_4289	-	major facilitator superfamily transporter
4263	 70.83	0	4511792..4512199	+	135	119870320	-	Mkms_4290	-	endoribonuclease L-PSP
4264	 72.98	+1	4512268..4512948	-	226	119870321	-	Mkms_4291	-	Orn/DAP/Arg decarboxylase 2
4265	 67.44	0	4513309..4514979	+	556	119870322	-	Mkms_4292	-	potassium-transporting ATPase subunit A
4266	 67.65	0	4514981..4517122	+	713	119870323	-	Mkms_4293	-	potassium-transporting ATPase subunit B
4267	 72.41	+1	4517125..4517994	+	289	119870324	-	Mkms_4294	-	K+ transporting ATPase, KdpC subunit
4268	 72.12	+1	4518002..4520512	+	836	119870325	-	Mkms_4295	-	osmosensitive K+ channel signal transduction histidine kinase
4269	 68.58	0	4520509..4521189	+	226	119870326	-	Mkms_4296	-	two component transcriptional regulator
4270	 68.64	0	4521292..4523169	+	625	119870327	-	Mkms_4297	-	AMP-dependent synthetase and ligase
4271	 70.21	0	4524356..4525765	+	469	119870328	-	Mkms_4299	-	recombinase
4272	 64.04	-1	4526026..4526292	+	88	119870329	-	Mkms_4300	-	hypothetical protein
4273	 63.64	-1	4526507..4527331	+	274	119870330	-	Mkms_4301	-	hypothetical protein
4274	 68.38	0	4527328..4527561	+	77	119870331	-	Mkms_4302	-	hypothetical protein
4275	 70.40	0	4527551..4527871	+	106	119870332	-	Mkms_4303	-	hypothetical protein
4276	 60.77	-2	4527910..4528452	+	180	119870333	-	Mkms_4304	-	excinuclease ABC subunit C
4277	 65.15	-1	4528445..4528840	+	131	119870334	-	Mkms_4305	-	hypothetical protein
4278	 67.38	0	4528866..4529144	+	92	119870335	-	Mkms_4306	-	hypothetical protein
4279	 67.46	0	4529229..4529480	+	83	119870336	-	Mkms_4307	-	hypothetical protein
4280	 68.49	0	4529458..4529676	+	72	119870337	-	Mkms_4308	-	hypothetical protein
4281	 70.83	0	4529679..4530326	+	215	119870338	-	Mkms_4309	-	hypothetical protein
4282	 72.00	+1	4530326..4530550	+	74	119870339	-	Mkms_4310	-	hypothetical protein
4283	 66.67	0	4530779..4531636	+	285	119870340	-	Mkms_4311	-	phage major capsid protein, HK97
4284	 70.30	0	4531907..4532236	+	109	119870341	-	Mkms_4312	-	hypothetical protein
4285	 71.43	0	4532253..4532567	+	104	119870342	-	Mkms_4313	-	hypothetical protein
4286	 70.00	0	4532567..4532926	+	119	119870343	-	Mkms_4314	-	HNH endonuclease
4287	 63.47	-1	4533720..4534094	+	124	119870344	-	Mkms_4315	-	hypothetical protein
4288	 65.01	-1	4534118..4534780	+	220	119870345	-	Mkms_4316	-	hypothetical protein
4289	 65.91	0	4534893..4535156	+	87	119870346	-	Mkms_4317	-	hypothetical protein
4290	 67.95	0	4535315..4535782	+	155	119870347	-	Mkms_4318	-	hypothetical protein
4291	 69.93	0	4535786..4536490	+	234	119870348	-	Mkms_4319	-	putative integral membrane protein
4292	 68.58	0	4536531..4537316	+	261	119870349	-	Mkms_4320	-	prolipoprotein diacylglyceryl transferase
4293	 68.29	0	4537313..4537681	+	122	119870350	-	Mkms_4321	-	hypothetical protein
4294	 68.54	0	4537690..4539234	+	514	119870351	-	Mkms_4322	-	radical SAM domain-containing protein
4295	 70.54	0	4539231..4540160	-	309	119870352	-	Mkms_4323	-	Ppx/GppA phosphatase
4296	 68.86	0	4540162..4540662	-	166	119870353	-	Mkms_4324	-	hypothetical protein
4297	 72.44	+1	4540655..4541329	-	224	119870354	-	Mkms_4325	-	septum formation initiator
4298	 69.30	0	4541350..4542639	-	429	119870355	eno	Mkms_4326	-	phosphopyruvate hydratase
4299	 69.57	0	4542720..4543478	-	252	119870356	-	Mkms_4327	-	putative lipoprotein LpqU
4300	 69.14	0	4543710..4544639	+	309	119870357	-	Mkms_4328	-	hypothetical protein
4301	 69.37	0	4544636..4545895	+	419	119870358	-	Mkms_4329	-	Dyp-type peroxidase family protein
4302	 70.09	0	4546014..4546976	-	320	119870359	-	Mkms_4330	-	nucleoside triphosphate pyrophosphohydrolase
4303	 70.05	0	4546973..4550608	-	1211	119870360	-	Mkms_4331	-	transcription-repair coupling factor
4304	 74.07	+1	4550902..4552548	+	548	119870361	-	Mkms_4332	-	hypothetical protein
4305	 66.98	0	4552550..4553188	-	212	119870362	-	Mkms_4333	-	TetR family transcriptional regulator
4306	 72.29	+1	4553308..4554801	+	497	119870363	-	Mkms_4334	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
4307	 66.67	0	4554903..4555883	+	326	119870364	-	Mkms_4335	-	ribose-phosphate pyrophosphokinase
4308	 67.22	0	4555884..4556246	+	120	119870365	-	Mkms_4336	-	arsenate reductase
4309	 68.79	0	4556243..4556902	+	219	119870366	-	Mkms_4337	-	putative lipoprotein
4310	 69.89	0	4556929..4557798	+	289	119870367	-	Mkms_4338	-	short-chain dehydrogenase/reductase SDR
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.