IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4127	 65.18	-1	4382117..4383259	-	380	119870184	-	Mkms_4154	-	acyl-CoA dehydrogenase domain-containing protein
4128	 67.20	0	4383291..4384040	-	249	119870185	-	Mkms_4155	-	short chain enoyl-CoA hydratase
4129	 68.65	0	4384088..4385245	-	385	119870186	-	Mkms_4156	-	acetyl-CoA acetyltransferases
4130	 69.97	0	4385427..4386212	+	261	119870187	-	Mkms_4157	-	GntR family transcriptional regulator
4131	 64.81	-1	4386242..4388020	-	592	119870188	-	Mkms_4158	-	hypothetical protein
4132	 69.73	0	4388066..4388587	-	173	119870189	-	Mkms_4159	-	DoxX family protein
4133	 74.11	+1	4388648..4389910	-	420	119870190	-	Mkms_4160	-	hypothetical protein
4134	 73.26	+1	4389936..4390739	+	267	119870191	-	Mkms_4161	-	short-chain dehydrogenase/reductase SDR
4135	 72.98	+1	4390736..4391638	-	300	119870192	-	Mkms_4162	-	alpha/beta hydrolase fold
4136	 69.24	0	4391638..4392258	-	206	119870193	-	Mkms_4163	-	hypothetical protein
4137	 71.65	0	4392255..4392896	-	213	119870194	-	Mkms_4164	-	hypothetical protein
4138	 66.67	0	4393008..4393481	-	157	119870195	-	Mkms_4165	-	3-demethylubiquinone-9 3-methyltransferase
4139	 68.58	0	4393499..4394437	+	312	119870196	-	Mkms_4166	-	alpha/beta hydrolase fold
4140	 71.59	0	4394434..4397379	+	981	119870197	-	Mkms_4167	-	hypothetical protein
4141	 71.08	0	4397384..4398199	+	271	119870198	-	Mkms_4168	-	putative adenylate/guanylate cyclase
4142	 70.52	0	4398369..4399043	+	224	119870199	-	Mkms_4169	-	hypothetical protein
4143	 69.38	0	4399284..4400501	-	405	119870200	-	Mkms_4170	-	Serine-type D-Ala-D-Ala carboxypeptidase
4144	 68.52	0	4400558..4401418	-	286	119870201	-	Mkms_4171	-	hypothetical protein
4145	 60.37	-2	4401444..4401824	-	126	119870202	-	Mkms_4172	-	hypothetical protein
4146	 68.50	0	4401880..4402587	+	235	119870203	-	Mkms_4173	-	ArsR family transcriptional regulator
4147	 68.33	0	4402584..4403843	+	419	119870204	-	Mkms_4174	-	major facilitator superfamily transporter
4148	 65.33	-1	4403889..4404635	-	248	119870205	-	Mkms_4175	-	methyltransferase type 11
4149	 59.29	-2	4404815..4405492	+	225	119870206	-	Mkms_4176	-	hypothetical protein
4150	 64.63	-1	4405551..4406285	-	244	119870207	-	Mkms_4177	-	hypothetical protein
4151	 65.52	0	4406324..4407454	-	376	119870208	-	Mkms_4178	-	translation-associated GTPase
4152	 73.02	+1	4407506..4408669	+	387	119870209	-	Mkms_4179	-	hypothetical protein
4153	 63.77	-1	4408671..4408877	-	68	119870210	-	Mkms_4180	-	hypothetical protein
4154	 68.66	0	4408900..4409901	-	333	119870211	ispH	Mkms_4181	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
4155	 68.65	0	4409955..4410509	+	184	119870212	-	Mkms_4182	-	hypothetical protein
4156	 71.36	0	4410506..4411741	+	411	119870213	xseA	Mkms_4183	-	exodeoxyribonuclease VII large subunit
4157	 63.85	-1	4411728..4411940	+	70	119870214	-	Mkms_4184	-	exodeoxyribonuclease VII small subunit
4158	 65.77	0	4412004..4413119	+	371	119870215	-	Mkms_4185	-	3-beta hydroxysteroid dehydrogenase/isomerase
4159	 64.17	-1	4413129..4413449	-	106	119870216	-	Mkms_4186	-	hypothetical protein
4160	 70.85	0	4413524..4414240	-	238	119870217	-	Mkms_4187	-	MgtC/SapB transporter
4161	 63.11	-1	4414555..4416099	+	514	119870218	-	Mkms_4188	-	sulfatase
4162	 65.57	0	4416099..4417007	+	302	119870219	-	Mkms_4189	-	putative nonspecific acid phosphatase precursor
4163	 71.00	0	4417000..4417875	+	291	119870220	-	Mkms_4190	-	hypothetical protein
4164	 70.82	0	4417921..4418691	+	256	119870221	-	Mkms_4191	-	short-chain dehydrogenase/reductase SDR
4165	 72.12	+1	4418692..4419516	+	274	119870222	-	Mkms_4192	-	short-chain dehydrogenase/reductase SDR
4166	 65.67	0	4419522..4420724	+	400	119870223	-	Mkms_4193	-	hypothetical protein
4167	 70.74	0	4420699..4421532	-	277	119870224	-	Mkms_4194	-	hypothetical protein
4168	 73.33	+1	4421537..4422196	-	219	119870225	-	Mkms_4195	-	hypothetical protein
4169	 69.40	0	4422251..4423312	+	353	119870226	glpX	Mkms_4196	-	fructose 1,6-bisphosphatase II
4170	 68.35	0	4423331..4424752	+	473	119870227	fumC	Mkms_4197	-	fumarate hydratase
4171	 71.68	0	4424801..4425877	-	358	119870228	-	Mkms_4198	-	NAD-dependent epimerase/dehydratase
4172	 73.77	+1	4425970..4426926	+	318	119870229	-	Mkms_4199	-	hypothetical protein
4173	 71.82	+1	4426927..4428633	-	568	119870230	-	Mkms_4200	-	GAF sensor signal transduction histidine kinase
4174	 68.21	0	4428643..4429290	-	215	119870231	-	Mkms_4201	-	two component LuxR family transcriptional regulator
4175	 72.14	+1	4429302..4430087	-	261	119870232	-	Mkms_4202	-	UspA domain-containing protein
4176	 70.45	0	4430097..4431074	-	325	119870233	-	Mkms_4203	-	hypothetical protein
4177	 68.56	0	4431181..4432551	-	456	119870234	-	Mkms_4204	-	PhoH family protein
4178	 66.18	0	4432695..4433522	-	275	119870235	-	Mkms_4205	-	fatty acid desaturase, type 2
4179	 69.71	0	4433578..4435056	-	492	119870236	glyA	Mkms_4206	-	serine hydroxymethyltransferase
4180	 71.26	0	4435176..4436417	-	413	119870237	-	Mkms_4207	-	hypothetical protein
4181	 66.35	0	4436483..4437421	+	312	119870238	-	Mkms_4208	-	pantothenate kinase
4182	 70.45	0	4437499..4437894	-	131	119870239	-	Mkms_4209	-	hypothetical protein
4183	 72.38	+1	4437951..4438370	-	139	119870240	-	Mkms_4210	-	hypothetical protein
4184	 72.95	+1	4438487..4439839	-	450	119870241	-	Mkms_4211	-	hypothetical protein
4185	 66.29	0	4439861..4440652	-	263	119870242	-	Mkms_4212	-	undecaprenyl pyrophosphate synthetase
4186	 68.01	0	4440708..4441451	+	247	119870243	-	Mkms_4213	-	hemolysin III family channel protein
4187	 65.56	0	4441501..4441860	-	119	119870244	-	Mkms_4214	-	nuclear transport factor 2
4188	 72.48	+1	4441871..4443865	-	664	119870245	-	Mkms_4215	-	hypothetical protein
4189	 68.63	0	4443849..4444154	-	101	119870246	-	Mkms_4216	-	hypothetical protein
4190	 67.70	0	4444151..4445023	-	290	119870247	-	Mkms_4217	-	LmbE family protein
4191	 71.39	0	4445163..4445585	+	140	119870248	-	Mkms_4218	-	hypothetical protein
4192	 67.68	0	4445830..4446324	+	164	119870249	greA	Mkms_4219	-	transcription elongation factor GreA
4193	 74.70	+1	4446331..4447002	+	223	119870250	-	Mkms_4220	-	hypothetical protein
4194	 69.04	0	4446994..4448172	-	392	119870251	-	Mkms_4221	-	cystathionine gamma-synthase
4195	 68.97	0	4448215..4449384	+	389	119870252	-	Mkms_4222	-	acyl-CoA dehydrogenase domain-containing protein
4196	 67.82	0	4449391..4450344	-	317	119870253	-	Mkms_4223	-	hypothetical protein
4197	 69.03	0	4450460..4451854	-	464	119870254	-	Mkms_4224	-	cystathionine beta-synthase
4198	 70.09	0	4451884..4452936	-	350	119870255	-	Mkms_4225	-	alpha/beta hydrolase domain-containing protein
4199	 72.52	+1	4453120..4454076	+	318	119870256	-	Mkms_4226	-	GDSL family lipase
4200	 68.72	0	4454109..4455326	+	405	119870257	-	Mkms_4227	-	acetyl-CoA acetyltransferase
4201	 68.32	0	4455391..4456236	-	281	119870258	-	Mkms_4228	-	hypothetical protein
4202	 67.49	0	4456452..4457300	-	282	119870259	-	Mkms_4229	-	hypothetical protein
4203	 69.85	0	4457470..4458507	+	345	119870260	-	Mkms_4230	-	enoyl-CoA hydratase
4204	 67.96	0	4458527..4459300	+	257	119870261	-	Mkms_4231	-	enoyl-CoA hydratase
4205	 69.14	0	4459310..4461007	+	565	119870262	-	Mkms_4232	-	hypothetical protein
4206	 73.07	+1	4461004..4461378	-	124	119870263	-	Mkms_4233	-	rhodanese domain-containing protein
4207	 69.68	0	4461380..4461910	-	176	119870264	-	Mkms_4234	-	cysteine dioxygenase type I
4208	 72.44	+1	4462021..4462470	+	149	119870265	-	Mkms_4235	-	LpqV
4209	 68.99	0	4462511..4463545	+	344	119870266	-	Mkms_4236	-	patatin
4210	 73.84	+1	4463536..4464441	-	301	119870267	-	Mkms_4237	-	patatin
4211	 71.65	0	4464468..4465109	+	213	119870268	-	Mkms_4238	-	MOSC domain-containing protein
4212	 68.75	0	4465111..4466166	-	351	119870269	-	Mkms_4239	-	dihydrodipicolinate reductase
4213	 66.67	0	4466244..4467437	+	397	119870270	-	Mkms_4240	-	lipid-transfer protein
4214	 64.47	-1	4467564..4467881	+	105	119870271	-	Mkms_4241	-	hypothetical protein
4215	 67.68	0	4467939..4469315	-	458	119870272	-	Mkms_4242	-	sodium:dicarboxylate symporter
4216	 70.47	0	4469408..4470985	+	525	119870273	-	Mkms_4243	-	signal transduction histidine kinase regulating citrate/malate metabolism
4217	 72.36	+1	4470982..4471683	+	233	119870274	-	Mkms_4244	-	Fis family transcriptional regulator
4218	 70.96	0	4471680..4472726	-	348	119870275	-	Mkms_4245	-	hypothetical protein
4219	 73.25	+1	4473192..4473890	-	232	119870276	-	Mkms_4246	-	peptidoglycan binding domain-containing protein
4220	 73.25	+1	4473950..4474405	-	151	119870277	-	Mkms_4247	-	cupin 2 domain-containing protein
4221	 69.36	0	4474424..4475500	-	358	119870278	-	Mkms_4248	-	putative esterase
4222	 71.32	0	4475593..4476966	-	457	119870279	-	Mkms_4249	-	hypothetical protein
4223	 67.42	0	4477054..4477317	-	87	119870280	-	Mkms_4250	-	hypothetical protein
4224	 69.04	0	4477314..4478744	-	476	119870281	-	Mkms_4251	-	permease for cytosine/purines, uracil, thiamine, allantoin
4225	 67.53	0	4478898..4479704	+	268	119870282	-	Mkms_4252	-	M15D family D-Ala-D-Ala dipeptidase VanX
4226	 70.23	0	4479690..4481483	-	597	119870283	-	Mkms_4253	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.