IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4052	 70.75	0	4303716..4304720	-	334	119870109	-	Mkms_4079	-	glycosyl transferase family protein
4053	 68.84	0	4304717..4305592	-	291	119870110	-	Mkms_4080	-	dihydropteroate synthase
4054	 66.05	0	4305668..4307446	-	592	119870111	-	Mkms_4081	-	acyl-CoA synthetase
4055	 67.90	0	4307499..4308065	-	188	119870112	-	Mkms_4082	-	hypothetical protein
4056	 74.58	+1	4308092..4310164	+	690	119870113	-	Mkms_4083	-	AAA ATPase
4057	 73.07	+1	4310210..4310818	+	202	119870114	-	Mkms_4084	-	hypothetical protein
4058	 70.45	0	4310822..4312435	-	537	119870115	-	Mkms_4085	-	ABC transporter related
4059	 71.12	0	4312538..4313638	-	366	119870116	-	Mkms_4086	-	dipeptidase
4060	 70.04	0	4313664..4314611	+	315	119870117	-	Mkms_4087	-	putative transferase
4061	 67.25	0	4314586..4315947	-	453	119870118	-	Mkms_4088	-	beta-lactamase domain-containing protein
4062	 68.35	0	4315966..4316739	-	257	119870119	-	Mkms_4089	-	hypothetical protein
4063	 68.63	0	4316758..4316961	-	67	119870120	-	Mkms_4090	-	hypothetical protein
4064	 66.00	0	4317142..4318347	-	401	119870121	-	Mkms_4091	-	transposase IS116/IS110/IS902 family protein
4065	 65.93	0	4318594..4318863	+	89	119870122	-	Mkms_4092	-	hypothetical protein
4066	 65.42	0	4318896..4319297	+	133	119870123	-	Mkms_4093	-	hypothetical protein
4067	 67.81	0	4319305..4319655	-	116	119870124	-	Mkms_4094	-	hypothetical protein
4068	 71.37	0	4319646..4321049	-	467	119870125	-	Mkms_4095	-	acyl-CoA synthetase
4069	 68.68	0	4321091..4321636	+	181	119870126	-	Mkms_4096	-	NUDIX hydrolase
4070	 69.60	0	4321697..4323433	+	578	119870127	-	Mkms_4097	-	hypothetical protein
4071	 65.26	-1	4323443..4323868	+	141	119870128	-	Mkms_4098	-	hypothetical protein
4072	 66.67	0	4323985..4324509	+	174	119870129	-	Mkms_4099	-	hypothetical protein
4073	 66.88	0	4324612..4325568	-	318	119870130	-	Mkms_4100	-	L-proline dehydrogenase
4074	 69.24	0	4325572..4327200	-	542	119870131	-	Mkms_4101	-	delta-1-pyrroline-5-carboxylate dehydrogenase
4075	 73.21	+1	4327284..4328948	+	554	119870132	-	Mkms_4102	-	hypothetical protein
4076	 70.04	0	4328849..4330597	-	582	119870133	-	Mkms_4103	-	acyl-CoA dehydrogenase domain-containing protein
4077	 72.81	+1	4330628..4331620	-	330	119870134	-	Mkms_4104	-	N-succinyldiaminopimelate aminotransferase
4078	 63.58	-1	4331769..4332092	-	107	119870135	-	Mkms_4105	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4079	 65.94	0	4332409..4332957	-	182	119870136	-	Mkms_4106	-	YceI family protein
4080	 69.88	0	4333127..4335706	-	859	119870137	fbiC	Mkms_4107	-	FO synthase
4081	 73.15	+1	4335828..4336274	-	148	119870138	-	Mkms_4108	-	hypothetical protein
4082	 69.36	0	4336388..4337314	-	308	119870139	-	Mkms_4109	-	LmbE family protein
4083	 65.32	-1	4337622..4338884	+	420	119870140	-	Mkms_4110	-	hypothetical protein
4084	 71.08	0	4339901..4343956	+	1351	119870141	-	Mkms_4111	-	hypothetical protein
4085	 64.62	-1	4344043..4345602	+	519	119870142	-	Mkms_4112	-	integrase catalytic subunit
4086	 67.06	0	4346072..4347355	+	427	119870143	-	Mkms_4113	-	hypothetical protein
4087	 71.57	0	4347404..4349278	-	624	119870144	-	Mkms_4114	-	extracellular solute-binding protein
4088	 68.66	0	4349310..4351211	-	633	119870145	-	Mkms_4115	-	GTP-binding protein TypA
4089	 62.50	-1	4351359..4351526	+	55	119870146	-	Mkms_4116	-	hypothetical protein
4090	 66.30	0	4351616..4351888	+	90	119870147	-	Mkms_4117	-	hypothetical protein
4091	 72.18	+1	4351896..4352294	-	132	119870148	-	Mkms_4118	-	NUDIX hydrolase
4092	 65.26	-1	4352322..4352606	+	94	119870149	phhB	Mkms_4119	-	pterin-4-alpha-carbinolamine dehydratase
4093	 69.89	0	4352551..4353882	-	443	119870150	pimE	Mkms_4120	-	mannosyltransferase
4094	 76.36	+2	4353952..4354467	+	171	119870151	-	Mkms_4121	-	hypothetical protein
4095	 72.59	+1	4354517..4355545	+	342	119870152	-	Mkms_4122	-	hypothetical protein
4096	 60.54	-2	4355683..4355829	-	48	119870153	-	Mkms_4123	-	hypothetical protein
4097	 68.21	0	4355926..4356507	-	193	119870154	-	Mkms_4124	-	HhH-GPD family protein
4098	 72.61	+1	4356572..4357783	+	403	119870155	-	Mkms_4125	-	signal transduction histidine kinase, LytS
4099	 70.37	0	4357780..4358589	+	269	119870156	-	Mkms_4126	-	response regulator receiver protein
4100	 71.73	0	4358582..4358956	+	124	119870157	-	Mkms_4127	-	hypothetical protein
4101	 71.50	0	4358953..4360689	+	578	119870158	-	Mkms_4128	-	Na+/solute symporter
4102	 62.26	-1	4360888..4361205	+	105	119870159	-	Mkms_4129	-	hypothetical protein
4103	 66.73	0	4361202..4362827	+	541	119870160	-	Mkms_4130	-	SSS family solute/sodium (Na+) symporter
4104	 72.10	+1	4362904..4364136	+	410	119870161	-	Mkms_4131	-	major facilitator superfamily transporter
4105	 66.09	0	4364133..4364306	-	57	119870162	-	Mkms_4132	-	hypothetical protein
4106	 68.69	0	4364360..4364803	-	147	119870163	-	Mkms_4133	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
4107	 67.78	0	4364838..4365377	+	179	119870164	-	Mkms_4134	-	hypothetical protein
4108	 69.30	0	4365374..4366210	+	278	119870165	-	Mkms_4135	-	O-methyltransferase domain-containing protein
4109	 69.90	0	4366227..4366628	-	133	119870166	-	Mkms_4136	-	GntR family transcriptional regulator
4110	 69.89	0	4366629..4367342	+	237	119870167	-	Mkms_4137	-	NAD-dependent deacetylase
4111	 71.09	0	4367354..4367986	-	210	119870168	-	Mkms_4138	-	methyltransferase type 12
4112	 69.31	0	4368003..4370312	-	769	119870169	-	Mkms_4139	-	MMPL domain-containing protein
4113	 69.41	0	4370481..4371026	+	181	119870170	-	Mkms_4140	-	DoxX family protein
4114	 58.33	-2	4371110..4371241	+	43	119870171	-	Mkms_4141	-	hypothetical protein
4115	 65.77	0	4371316..4372314	-	332	119870172	-	Mkms_4142	-	2-nitropropane dioxygenase, NPD
4116	 68.13	0	4372320..4373072	-	250	119870173	-	Mkms_4143	-	short-chain dehydrogenase/reductase SDR
4117	 68.96	0	4373126..4374217	-	363	119870174	-	Mkms_4144	-	L-carnitine dehydratase/bile acid-inducible protein F
4118	 69.60	0	4374317..4375135	+	272	119870175	-	Mkms_4145	-	enoyl-CoA hydratase
4119	 65.96	0	4375282..4375566	+	94	119870176	-	Mkms_4146	-	HicB family protein
4120	 69.88	0	4375615..4376889	+	424	119870177	-	Mkms_4147	-	H+ antiporter protein
4121	 68.24	0	4376894..4377655	-	253	119870178	-	Mkms_4148	-	abortive infection protein
4122	 70.76	0	4377652..4378800	-	382	119870179	-	Mkms_4149	-	NAD-dependent epimerase/dehydratase
4123	 73.95	+1	4378806..4379450	-	214	119870180	-	Mkms_4150	-	TetR family transcriptional regulator
4124	 69.97	0	4379531..4380559	+	342	119870181	-	Mkms_4151	-	aldo/keto reductase
4125	 70.18	0	4380556..4381068	-	170	119870182	-	Mkms_4152	-	carbonic anhydrase
4126	 70.83	0	4381277..4382020	+	247	119870183	-	Mkms_4153	-	beta-Ig-H3/fasciclin
4127	 65.18	-1	4382117..4383259	-	380	119870184	-	Mkms_4154	-	acyl-CoA dehydrogenase domain-containing protein
4128	 67.20	0	4383291..4384040	-	249	119870185	-	Mkms_4155	-	short chain enoyl-CoA hydratase
4129	 68.65	0	4384088..4385245	-	385	119870186	-	Mkms_4156	-	acetyl-CoA acetyltransferases
4130	 69.97	0	4385427..4386212	+	261	119870187	-	Mkms_4157	-	GntR family transcriptional regulator
4131	 64.81	-1	4386242..4388020	-	592	119870188	-	Mkms_4158	-	hypothetical protein
4132	 69.73	0	4388066..4388587	-	173	119870189	-	Mkms_4159	-	DoxX family protein
4133	 74.11	+1	4388648..4389910	-	420	119870190	-	Mkms_4160	-	hypothetical protein
4134	 73.26	+1	4389936..4390739	+	267	119870191	-	Mkms_4161	-	short-chain dehydrogenase/reductase SDR
4135	 72.98	+1	4390736..4391638	-	300	119870192	-	Mkms_4162	-	alpha/beta hydrolase fold
4136	 69.24	0	4391638..4392258	-	206	119870193	-	Mkms_4163	-	hypothetical protein
4137	 71.65	0	4392255..4392896	-	213	119870194	-	Mkms_4164	-	hypothetical protein
4138	 66.67	0	4393008..4393481	-	157	119870195	-	Mkms_4165	-	3-demethylubiquinone-9 3-methyltransferase
4139	 68.58	0	4393499..4394437	+	312	119870196	-	Mkms_4166	-	alpha/beta hydrolase fold
4140	 71.59	0	4394434..4397379	+	981	119870197	-	Mkms_4167	-	hypothetical protein
4141	 71.08	0	4397384..4398199	+	271	119870198	-	Mkms_4168	-	putative adenylate/guanylate cyclase
4142	 70.52	0	4398369..4399043	+	224	119870199	-	Mkms_4169	-	hypothetical protein
4143	 69.38	0	4399284..4400501	-	405	119870200	-	Mkms_4170	-	Serine-type D-Ala-D-Ala carboxypeptidase
4144	 68.52	0	4400558..4401418	-	286	119870201	-	Mkms_4171	-	hypothetical protein
4145	 60.37	-2	4401444..4401824	-	126	119870202	-	Mkms_4172	-	hypothetical protein
4146	 68.50	0	4401880..4402587	+	235	119870203	-	Mkms_4173	-	ArsR family transcriptional regulator
4147	 68.33	0	4402584..4403843	+	419	119870204	-	Mkms_4174	-	major facilitator superfamily transporter
4148	 65.33	-1	4403889..4404635	-	248	119870205	-	Mkms_4175	-	methyltransferase type 11
4149	 59.29	-2	4404815..4405492	+	225	119870206	-	Mkms_4176	-	hypothetical protein
4150	 64.63	-1	4405551..4406285	-	244	119870207	-	Mkms_4177	-	hypothetical protein
4151	 65.52	0	4406324..4407454	-	376	119870208	-	Mkms_4178	-	translation-associated GTPase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.