IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3942	 69.44	0	4181869..4182951	-	360	119869999	-	Mkms_3969	-	threonine synthase
3943	 68.83	0	4182948..4184285	-	445	119870000	-	Mkms_3970	-	homoserine dehydrogenase
3944	 70.39	0	4184282..4185706	-	474	119870001	-	Mkms_3971	-	diaminopimelate decarboxylase
3945	 68.91	0	4185703..4187355	-	550	119870002	argS	Mkms_3972	-	arginyl-tRNA synthetase
3946	 67.56	0	4187576..4188922	-	448	119870003	-	Mkms_3973	-	hypothetical protein
3947	 70.75	0	4189064..4191049	+	661	119870004	-	Mkms_3974	-	stage II sporulation E family protein
3948	 69.57	0	4191321..4191803	+	160	119870005	-	Mkms_3975	-	hypothetical protein
3949	 66.24	0	4191883..4192116	-	77	119870006	-	Mkms_3976	-	hypothetical protein
3950	 72.69	+1	4192214..4193308	-	364	119870007	-	Mkms_3977	-	alcohol dehydrogenase
3951	 72.21	+1	4193301..4194275	-	324	119870008	-	Mkms_3978	-	oxidoreductase domain-containing protein
3952	 71.68	0	4194370..4195605	+	411	119870009	-	Mkms_3979	-	glycosyl transferase, group 1
3953	 67.56	0	4195508..4196179	-	223	119870010	-	Mkms_3980	-	protein of unknown function DUF899, thioredoxin family protein
3954	 70.63	0	4196183..4197064	-	293	119870011	-	Mkms_3981	-	luciferase family protein
3955	 69.80	0	4197167..4198474	+	435	119870012	-	Mkms_3982	-	integral membrane sensor signal transduction histidine kinase
3956	 67.29	0	4198462..4199106	+	214	119870013	-	Mkms_3983	-	two component LuxR family transcriptional regulator
3957	 72.89	+1	4199126..4200025	+	299	119870014	-	Mkms_3984	-	hypothetical protein
3958	 65.45	0	4200092..4200421	+	109	119870015	-	Mkms_3985	-	hypothetical protein
3959	 66.92	0	4200450..4200851	+	133	119870016	-	Mkms_3986	-	glyoxalase/bleomycin resistance protein/dioxygenase
3960	 66.67	0	4200836..4202218	-	460	119870017	-	Mkms_3987	-	general substrate transporter
3961	 72.06	+1	4202248..4203843	-	531	119870018	-	Mkms_3988	-	hypothetical protein
3962	 70.76	0	4203880..4204368	-	162	119870019	-	Mkms_3989	-	BadM/Rrf2 family transcriptional regulator
3963	 68.83	0	4204378..4204977	-	199	119870020	-	Mkms_3990	-	isochorismatase hydrolase
3964	 71.19	0	4204992..4205720	-	242	119870021	-	Mkms_3991	-	inositol monophosphatase
3965	 67.80	0	4205717..4207576	-	619	119870022	-	Mkms_3992	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
3966	 67.96	0	4207576..4208505	-	309	119870023	-	Mkms_3993	-	sulfate adenylyltransferase subunit 2
3967	 69.29	0	4208652..4210178	+	508	119870024	-	Mkms_3994	-	hypothetical protein
3968	 64.43	-1	4210213..4210704	-	163	119870025	-	Mkms_3995	-	carbonic anhydrase
3969	 71.38	0	4210749..4212617	-	622	119870026	-	Mkms_3996	-	glycosyl transferase family protein
3970	 70.30	0	4212650..4213915	-	421	119870027	-	Mkms_3997	-	glycosyl transferase family protein
3971	 71.76	0	4213970..4215835	-	621	119870028	-	Mkms_3998	-	glycosyl transferase family protein
3972	 74.26	+1	4215850..4217403	-	517	119870029	-	Mkms_3999	-	integral membrane sensor signal transduction histidine kinase
3973	 67.32	0	4217423..4218187	-	254	119870030	-	Mkms_4000	-	two component transcriptional regulator
3974	 79.39	+2	4218292..4218519	+	75	119870031	-	Mkms_4001	-	hypothetical protein
3975	 67.89	0	4218583..4219560	+	325	119870032	-	Mkms_4002	-	binding-protein-dependent transport systems inner membrane component
3976	 66.77	0	4219560..4220483	+	307	119870033	-	Mkms_4003	-	binding-protein-dependent transport systems inner membrane component
3977	 71.51	0	4220480..4222315	+	611	119870034	-	Mkms_4004	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
3978	 67.45	0	4222327..4223994	+	555	119870035	-	Mkms_4005	-	extracellular solute-binding protein
3979	 70.07	0	4224069..4225271	+	400	119870036	-	Mkms_4006	-	acyl-CoA dehydrogenase type 2
3980	 68.60	0	4225285..4225854	-	189	119870037	-	Mkms_4007	-	hypothetical protein
3981	 72.10	+1	4225959..4228592	-	877	119870038	-	Mkms_4008	-	hypothetical protein
3982	 70.75	0	4228589..4229740	-	383	119870039	-	Mkms_4009	-	metallophosphoesterase
3983	 71.02	0	4229776..4230372	+	198	119870040	-	Mkms_4010	-	putative phosphohistidine phosphatase, SixA
3984	 64.97	-1	4230440..4231441	+	333	119870041	-	Mkms_4011	-	integrase catalytic subunit
3985	 70.11	0	4231516..4232067	-	183	119870042	-	Mkms_4012	-	putative lipoprotein LprC
3986	 66.50	0	4232064..4232651	-	195	119870043	-	Mkms_4013	-	putative lipoprotein LprB
3987	 68.79	0	4232684..4234471	+	595	119870044	-	Mkms_4014	-	ABC transporter related
3988	 67.99	0	4234480..4236375	+	631	119870045	-	Mkms_4015	-	ABC transporter, transmembrane region
3989	 70.27	0	4236393..4238558	+	721	119870046	-	Mkms_4016	-	formate dehydrogenase
3990	 69.61	0	4238555..4239166	-	203	119870047	-	Mkms_4017	-	hypothetical protein
3991	 68.99	0	4239179..4240081	-	300	119870048	-	Mkms_4018	-	hypothetical protein
3992	 68.86	0	4240154..4240975	+	273	119870049	-	Mkms_4019	-	hypothetical protein
3993	 71.44	0	4240972..4242543	+	523	119870050	-	Mkms_4020	-	AMP-dependent synthetase and ligase
3994	 68.14	0	4242590..4242793	+	67	119870051	-	Mkms_4021	-	heavy metal transport/detoxification protein
3995	 71.82	+1	4242790..4245003	+	737	119870052	-	Mkms_4022	-	heavy metal translocating P-type ATPase
3996	 71.75	0	4245007..4246128	-	373	119870053	-	Mkms_4023	-	putative adenylate/guanylate cyclase
3997	 68.88	0	4246173..4246670	+	165	119870054	-	Mkms_4024	-	hypothetical protein
3998	 67.47	0	4246897..4247145	+	82	119870055	-	Mkms_4025	-	hypothetical protein
3999	 72.20	+1	4247219..4248049	-	276	119870056	-	Mkms_4026	-	AraC family transcriptional regulator
4000	 69.44	0	4248076..4248543	+	155	119870057	-	Mkms_4027	-	glyoxalase/bleomycin resistance protein/dioxygenase
4001	 68.29	0	4248566..4248997	+	143	119870058	-	Mkms_4028	-	histidine triad (HIT) protein
4002	 65.54	0	4249062..4249505	+	147	119870059	-	Mkms_4029	-	hypothetical protein
4003	 71.52	0	4249502..4250551	-	349	119870060	-	Mkms_4030	-	luciferase family protein
4004	 73.84	+1	4250591..4251412	-	273	119870061	-	Mkms_4031	-	uracil-DNA glycosylase superfamily protein
4005	 70.88	0	4251456..4252712	+	418	119870062	-	Mkms_4032	-	H+ antiporter protein
4006	 70.22	0	4252687..4253334	-	215	119870063	-	Mkms_4033	-	HxlR family transcriptional regulator
4007	 70.39	0	4253411..4253893	+	160	119870064	-	Mkms_4034	-	hypothetical protein
4008	 70.52	0	4253918..4255291	+	457	119870065	-	Mkms_4035	-	D-lactate dehydrogenase (cytochrome)
4009	 69.59	0	4255336..4256532	+	398	119870066	-	Mkms_4036	-	cytochrome P450
4010	 69.76	0	4256533..4257114	+	193	119870067	-	Mkms_4037	-	TetR family transcriptional regulator
4011	 67.13	0	4257071..4259452	-	793	119870068	-	Mkms_4038	-	sulfatase
4012	 68.90	0	4259571..4260287	-	238	119870069	-	Mkms_4039	-	siderophore-interacting protein
4013	 68.81	0	4260377..4261540	-	387	119870070	-	Mkms_4040	-	acyltransferase 3
4014	 67.86	0	4261537..4263210	-	557	119870071	-	Mkms_4041	-	DEAD/DEAH box helicase domain-containing protein
4015	 72.56	+1	4263317..4263859	+	180	119870072	-	Mkms_4042	-	LprE
4016	 70.98	0	4263889..4267320	+	1143	119870073	-	Mkms_4043	-	RecB family-like nuclease
4017	 70.43	0	4267296..4269236	-	646	119870074	-	Mkms_4044	-	EmrB/QacA family drug resistance transporter
4018	 72.50	+1	4269325..4270644	-	439	119870075	-	Mkms_4045	-	Bcr/CflA subfamily drug resistance transporter
4019	 70.62	0	4270794..4271552	+	252	119870076	-	Mkms_4046	-	hypothetical protein
4020	 66.30	0	4271732..4275541	+	1269	119870077	kgd	Mkms_4047	-	alpha-ketoglutarate decarboxylase
4021	 73.44	+1	4275566..4275934	-	122	119870078	-	Mkms_4048	-	hypothetical protein
4022	 67.27	0	4276037..4276867	+	276	119870079	-	Mkms_4049	-	short-chain dehydrogenase/reductase SDR
4023	 74.97	+1	4276875..4277705	-	276	119870080	-	Mkms_4050	-	substrate-binding region of ABC-type glycine betaine transport system
4024	 70.41	0	4277720..4278895	-	391	119870081	-	Mkms_4051	-	malate dehydrogenase
4025	 66.10	0	4278956..4280017	+	353	119870082	-	Mkms_4052	-	magnesium and cobalt transport protein CorA
4026	 71.89	+1	4280014..4280607	-	197	119870083	-	Mkms_4053	-	hypothetical protein
4027	 65.76	0	4280604..4281821	-	405	119870084	-	Mkms_4054	-	ABC transporter related
4028	 64.16	-1	4281826..4282662	-	278	119870085	-	Mkms_4055	-	binding-protein-dependent transport systems inner membrane component
4029	 66.45	0	4282663..4283589	-	308	119870086	-	Mkms_4056	-	binding-protein-dependent transport systems inner membrane component
4030	 68.17	0	4283586..4284983	-	465	119870087	-	Mkms_4057	-	extracellular solute-binding protein
4031	 67.99	0	4285138..4285665	-	175	119870088	-	Mkms_4058	-	hypothetical protein
4032	 70.79	0	4285770..4286327	+	185	119870089	-	Mkms_4059	-	hypothetical protein
4033	 69.11	0	4286331..4287314	-	327	119870090	-	Mkms_4060	-	citrate (pro-3S)-lyase
4034	 69.98	0	4287340..4288635	+	431	119870091	-	Mkms_4061	-	MgtE intracellular region
4035	 69.38	0	4288632..4289147	+	171	119870092	-	Mkms_4062	-	hypothetical protein
4036	 75.68	+2	4289275..4290606	+	443	119870093	-	Mkms_4063	-	hypothetical protein
4037	 71.03	0	4290665..4291810	+	381	119870094	-	Mkms_4064	-	hypothetical protein
4038	 67.15	0	4291815..4292228	-	137	119870095	-	Mkms_4065	-	sec-independent translocase
4039	 69.32	0	4292228..4293733	-	501	119870096	-	Mkms_4066	-	peptidase S1 and S6, chymotrypsin/Hap
4040	 66.67	0	4293793..4294191	-	132	119870097	-	Mkms_4067	-	hypothetical protein
4041	 68.07	0	4294280..4295062	-	260	119870098	-	Mkms_4068	-	RNA polymerase sigma factor SigE
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.