IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3880	 68.90	0	4114500..4115573	-	357	119869937	-	Mkms_3907	-	hypothetical protein
3881	 65.60	0	4115570..4116784	-	404	119869938	-	Mkms_3908	-	cytochrome P450
3882	 70.40	0	4116872..4117861	-	329	119869939	-	Mkms_3909	-	LacI family transcription regulator
3883	 68.40	0	4117866..4119191	-	441	119869940	-	Mkms_3910	-	general substrate transporter
3884	 73.33	+1	4119237..4119716	-	159	119869941	-	Mkms_3911	-	hypothetical protein
3885	 70.14	0	4119703..4120134	-	143	119869942	-	Mkms_3912	-	hypothetical protein
3886	 60.70	-2	4120328..4121098	+	256	119869943	-	Mkms_3913	-	hypothetical protein
3887	 69.29	0	4121079..4121459	+	126	119869944	-	Mkms_3914	-	putative lipoprotein
3888	 64.72	-1	4121456..4121815	+	119	119869945	-	Mkms_3915	-	hypothetical protein
3889	 71.38	0	4121793..4123724	-	643	119869946	-	Mkms_3916	-	major facilitator superfamily transporter
3890	 74.11	+1	4123779..4124369	-	196	119869947	-	Mkms_3917	-	putative deoxyribonucleotide triphosphate pyrophosphatase
3891	 69.73	0	4124378..4125160	-	260	119869948	rph	Mkms_3918	-	ribonuclease PH
3892	 69.64	0	4125186..4125959	-	257	119869949	-	Mkms_3919	-	beta-lactamase domain-containing protein
3893	 71.06	0	4126036..4126878	-	280	119869950	-	Mkms_3920	-	glutamate racemase
3894	 69.13	0	4126875..4127564	-	229	119869951	-	Mkms_3921	-	rhomboid family protein
3895	 67.49	0	4127555..4128526	-	323	119869952	-	Mkms_3922	-	cysteine synthase
3896	 67.02	0	4128529..4128810	-	93	119869953	-	Mkms_3923	-	thiamineS protein
3897	 67.87	0	4128846..4129259	-	137	119869954	-	Mkms_3924	-	Mov34/MPN/PAD-1 family protein
3898	 74.98	+1	4129288..4130310	-	340	119869955	-	Mkms_3925	-	peptidase S58, DmpA
3899	 67.52	0	4130307..4130894	-	195	119869956	-	Mkms_3926	-	hypothetical protein
3900	 65.54	0	4130907..4131173	-	88	119869957	clpS	Mkms_3927	-	ATP-dependent Clp protease adaptor protein ClpS
3901	 72.03	+1	4131255..4132577	+	440	119869958	-	Mkms_3928	-	nicotinate phosphoribosyltransferase
3902	 73.42	+1	4132580..4134577	+	665	119869959	-	Mkms_3929	-	helicase c2
3903	 70.54	0	4134620..4136065	+	481	119869960	-	Mkms_3930	-	LpqM
3904	 68.93	0	4136069..4136776	-	235	119869961	-	Mkms_3931	-	hypothetical protein
3905	 72.48	+1	4136857..4137699	-	280	119869962	-	Mkms_3932	-	hydrolase
3906	 68.83	0	4137696..4140278	-	860	119869963	-	Mkms_3933	-	alpha-glucan phosphorylases
3907	 67.67	0	4140473..4142560	+	695	119869964	-	Mkms_3934	-	alpha amylase, catalytic region
3908	 68.42	0	4142569..4144848	+	759	119869965	-	Mkms_3935	-	glycogen branching enzyme
3909	 71.56	0	4144855..4145754	-	299	119869966	-	Mkms_3936	-	thioredoxin domain-containing protein
3910	 67.98	0	4145768..4146148	-	126	119869967	-	Mkms_3937	-	hypothetical protein
3911	 69.04	0	4146205..4147386	-	393	119869968	-	Mkms_3938	-	acetyl-CoA acetyltransferase
3912	 66.45	0	4147480..4147950	+	156	119869969	-	Mkms_3939	-	methylmalonyl-CoA epimerase
3913	 72.39	+1	4147955..4148251	-	98	119869970	-	Mkms_3940	-	hypothetical protein
3914	 65.78	0	4148269..4148946	-	225	119869971	-	Mkms_3941	-	hypothetical protein
3915	 68.33	0	4148991..4150613	+	540	119869972	-	Mkms_3942	-	putative adenylate/guanylate cyclase
3916	 70.57	0	4150610..4152427	-	605	119869973	-	Mkms_3943	-	acyl-CoA synthetase
3917	 71.75	0	4152463..4154016	+	517	119869974	-	Mkms_3944	-	DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada
3918	 63.47	-1	4154013..4154513	+	166	119869975	-	Mkms_3945	-	methylated-DNA--protein-cysteine methyltransferase
3919	 68.18	0	4160279..4161532	-	417	119869976	-	Mkms_3946	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3920	 69.46	0	4161632..4162204	+	190	119869977	-	Mkms_3947	-	ATP:cob(I)alamin adenosyltransferase
3921	 70.02	0	4162198..4162644	-	148	119869978	-	Mkms_3948	-	hypothetical protein
3922	 68.85	0	4162653..4163018	-	121	119869979	atpC	Mkms_3949	-	F0F1 ATP synthase subunit epsilon
3923	 66.93	0	4163021..4164550	-	509	119869980	-	Mkms_3950	-	F0F1 ATP synthase subunit beta
3924	 66.45	0	4164594..4165523	-	309	119869981	-	Mkms_3951	-	F0F1 ATP synthase subunit gamma
3925	 65.88	0	4165538..4167184	-	548	119869982	-	Mkms_3952	-	F0F1 ATP synthase subunit alpha
3926	 69.29	0	4167230..4168561	-	443	119869983	-	Mkms_3953	-	F0F1 ATP synthase subunit delta
3927	 66.47	0	4168565..4169074	-	169	119869984	-	Mkms_3954	-	F0F1 ATP synthase subunit B
3928	 65.45	0	4169095..4169340	-	81	119869985	-	Mkms_3955	-	F0F1 ATP synthase subunit C
3929	 65.34	0	4169429..4170184	-	251	119869986	-	Mkms_3956	-	F0F1 ATP synthase subunit A
3930	 64.43	-1	4170181..4170627	-	148	119869987	-	Mkms_3957	-	hypothetical protein
3931	 68.50	0	4170877..4172076	-	399	119869988	-	Mkms_3958	-	glycosyl transferase family protein
3932	 72.15	+1	4172087..4172743	-	218	119869989	-	Mkms_3959	-	translation factor SUA5
3933	 73.79	+1	4172740..4173651	-	303	119869990	-	Mkms_3960	-	HemK family modification methylase
3934	 69.09	0	4173648..4174721	-	357	119869991	prfA	Mkms_3961	-	peptide chain release factor 1
3935	 62.20	-1	4174809..4175054	-	81	119869992	-	Mkms_3962	-	50S ribosomal protein L31P
3936	 73.10	+1	4175175..4175765	-	196	119869993	-	Mkms_3963	-	hypothetical protein
3937	 71.95	+1	4175829..4176263	+	144	119869994	-	Mkms_3964	-	MarR family transcriptional regulator
3938	 69.00	0	4176244..4177827	-	527	119869995	-	Mkms_3965	-	acyl-CoA synthetase
3939	 71.19	0	4177981..4178577	+	198	119869996	-	Mkms_3966	-	TetR family transcriptional regulator
3940	 69.03	0	4178628..4180619	-	663	119869997	-	Mkms_3967	-	transcription termination factor Rho
3941	 70.90	0	4180912..4181856	-	314	119869998	-	Mkms_3968	-	homoserine kinase
3942	 69.44	0	4181869..4182951	-	360	119869999	-	Mkms_3969	-	threonine synthase
3943	 68.83	0	4182948..4184285	-	445	119870000	-	Mkms_3970	-	homoserine dehydrogenase
3944	 70.39	0	4184282..4185706	-	474	119870001	-	Mkms_3971	-	diaminopimelate decarboxylase
3945	 68.91	0	4185703..4187355	-	550	119870002	argS	Mkms_3972	-	arginyl-tRNA synthetase
3946	 67.56	0	4187576..4188922	-	448	119870003	-	Mkms_3973	-	hypothetical protein
3947	 70.75	0	4189064..4191049	+	661	119870004	-	Mkms_3974	-	stage II sporulation E family protein
3948	 69.57	0	4191321..4191803	+	160	119870005	-	Mkms_3975	-	hypothetical protein
3949	 66.24	0	4191883..4192116	-	77	119870006	-	Mkms_3976	-	hypothetical protein
3950	 72.69	+1	4192214..4193308	-	364	119870007	-	Mkms_3977	-	alcohol dehydrogenase
3951	 72.21	+1	4193301..4194275	-	324	119870008	-	Mkms_3978	-	oxidoreductase domain-containing protein
3952	 71.68	0	4194370..4195605	+	411	119870009	-	Mkms_3979	-	glycosyl transferase, group 1
3953	 67.56	0	4195508..4196179	-	223	119870010	-	Mkms_3980	-	protein of unknown function DUF899, thioredoxin family protein
3954	 70.63	0	4196183..4197064	-	293	119870011	-	Mkms_3981	-	luciferase family protein
3955	 69.80	0	4197167..4198474	+	435	119870012	-	Mkms_3982	-	integral membrane sensor signal transduction histidine kinase
3956	 67.29	0	4198462..4199106	+	214	119870013	-	Mkms_3983	-	two component LuxR family transcriptional regulator
3957	 72.89	+1	4199126..4200025	+	299	119870014	-	Mkms_3984	-	hypothetical protein
3958	 65.45	0	4200092..4200421	+	109	119870015	-	Mkms_3985	-	hypothetical protein
3959	 66.92	0	4200450..4200851	+	133	119870016	-	Mkms_3986	-	glyoxalase/bleomycin resistance protein/dioxygenase
3960	 66.67	0	4200836..4202218	-	460	119870017	-	Mkms_3987	-	general substrate transporter
3961	 72.06	+1	4202248..4203843	-	531	119870018	-	Mkms_3988	-	hypothetical protein
3962	 70.76	0	4203880..4204368	-	162	119870019	-	Mkms_3989	-	BadM/Rrf2 family transcriptional regulator
3963	 68.83	0	4204378..4204977	-	199	119870020	-	Mkms_3990	-	isochorismatase hydrolase
3964	 71.19	0	4204992..4205720	-	242	119870021	-	Mkms_3991	-	inositol monophosphatase
3965	 67.80	0	4205717..4207576	-	619	119870022	-	Mkms_3992	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
3966	 67.96	0	4207576..4208505	-	309	119870023	-	Mkms_3993	-	sulfate adenylyltransferase subunit 2
3967	 69.29	0	4208652..4210178	+	508	119870024	-	Mkms_3994	-	hypothetical protein
3968	 64.43	-1	4210213..4210704	-	163	119870025	-	Mkms_3995	-	carbonic anhydrase
3969	 71.38	0	4210749..4212617	-	622	119870026	-	Mkms_3996	-	glycosyl transferase family protein
3970	 70.30	0	4212650..4213915	-	421	119870027	-	Mkms_3997	-	glycosyl transferase family protein
3971	 71.76	0	4213970..4215835	-	621	119870028	-	Mkms_3998	-	glycosyl transferase family protein
3972	 74.26	+1	4215850..4217403	-	517	119870029	-	Mkms_3999	-	integral membrane sensor signal transduction histidine kinase
3973	 67.32	0	4217423..4218187	-	254	119870030	-	Mkms_4000	-	two component transcriptional regulator
3974	 79.39	+2	4218292..4218519	+	75	119870031	-	Mkms_4001	-	hypothetical protein
3975	 67.89	0	4218583..4219560	+	325	119870032	-	Mkms_4002	-	binding-protein-dependent transport systems inner membrane component
3976	 66.77	0	4219560..4220483	+	307	119870033	-	Mkms_4003	-	binding-protein-dependent transport systems inner membrane component
3977	 71.51	0	4220480..4222315	+	611	119870034	-	Mkms_4004	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
3978	 67.45	0	4222327..4223994	+	555	119870035	-	Mkms_4005	-	extracellular solute-binding protein
3979	 70.07	0	4224069..4225271	+	400	119870036	-	Mkms_4006	-	acyl-CoA dehydrogenase type 2
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.