IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3810	 64.63	-1	4052094..4053077	-	327	119869867	-	Mkms_3836	-	enoyl-CoA hydratase/isomerase
3811	 69.75	0	4053070..4054203	-	377	119869868	-	Mkms_3837	-	peptidase M24
3812	 68.32	0	4054193..4055461	-	422	119869869	-	Mkms_3838	-	peptidase M24
3813	 64.19	-1	4055461..4056633	-	390	119869870	-	Mkms_3839	-	amidohydrolase 2
3814	 67.47	0	4056667..4057905	-	412	119869871	-	Mkms_3840	-	cytochrome P450
3815	 66.67	0	4057907..4058101	-	64	119869872	-	Mkms_3841	-	putative ferredoxin
3816	 68.64	0	4058101..4058808	-	235	119869873	-	Mkms_3842	-	TetR family transcriptional regulator
3817	 68.55	0	4058805..4059653	-	282	119869874	-	Mkms_3843	-	short-chain dehydrogenase/reductase SDR
3818	 70.44	0	4059653..4060501	-	282	119869875	-	Mkms_3844	-	alpha/beta hydrolase fold
3819	 62.02	-2	4060565..4061854	-	429	119869876	-	Mkms_3845	-	N-6 DNA methylase
3820	 59.29	-2	4062065..4062484	-	139	119869877	-	Mkms_3846	-	hypothetical protein
3821	 67.48	0	4062481..4063338	-	285	119869878	-	Mkms_3847	-	hypothetical protein
3822	 65.15	-1	4063666..4063995	-	109	119869879	-	Mkms_3848	-	hypothetical protein
3823	 60.84	-2	4064037..4064345	-	102	119869880	-	Mkms_3849	-	hypothetical protein
3824	 56.83	-2	4064342..4065601	-	419	119869881	-	Mkms_3850	-	restriction endonuclease S subunits-like protein
3825	 64.44	-1	4065598..4065912	-	104	119869882	-	Mkms_3851	-	type I site-specific deoxyribonuclease
3826	 64.18	-1	4065909..4068320	-	803	119869883	-	Mkms_3852	-	type III restriction enzyme, res subunit
3827	 69.59	0	4068524..4069105	-	193	119869884	-	Mkms_3853	-	NADPH-dependent FMN reductase
3828	 67.68	0	4069117..4070106	-	329	119869885	-	Mkms_3854	-	hypothetical protein
3829	 69.45	0	4070108..4070932	-	274	119869886	-	Mkms_3855	-	3-alpha-hydroxysteroid dehydrogenase
3830	 66.97	0	4070941..4072251	-	436	119869887	-	Mkms_3856	-	luciferase family protein
3831	 68.74	0	4072248..4074029	-	593	119869888	-	Mkms_3857	-	3-ketosteroid-delta-1-dehydrogenase
3832	 68.98	0	4074026..4074976	-	316	119869889	-	Mkms_3858	-	3-(2,3-dihydroxyphenyl)propionate dioxygenase
3833	 68.99	0	4074891..4076612	-	573	119869890	-	Mkms_3859	-	3-(3-hydroxyphenyl)propionate hydroxylase
3834	 68.17	0	4076612..4077475	-	287	119869891	-	Mkms_3860	-	alpha/beta hydrolase fold
3835	 68.33	0	4077534..4078316	+	260	119869892	-	Mkms_3861	-	regulatory proteins, IclR
3836	 70.97	0	4078348..4079949	+	533	119869893	-	Mkms_3862	-	fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
3837	 62.96	-1	4079976..4080272	-	98	119869894	-	Mkms_3863	-	hypothetical protein
3838	 60.30	-2	4080276..4080872	-	198	119869895	-	Mkms_3864	-	cytochrome c oxidase, subunit III
3839	 63.38	-1	4080869..4081690	-	273	119869896	-	Mkms_3865	-	hypothetical protein
3840	 63.99	-1	4081687..4082397	-	236	119869897	-	Mkms_3866	-	hypothetical protein
3841	 67.88	0	4082502..4083077	+	191	119869898	-	Mkms_3867	-	TetR family transcriptional regulator
3842	 72.39	+1	4083079..4083951	-	290	119869899	-	Mkms_3868	-	LAO/AO transport system ATPase
3843	 70.05	0	4083964..4085115	-	383	119869900	-	Mkms_3869	-	acetyl-CoA acetyltransferases
3844	 68.37	0	4085194..4085958	+	254	119869901	-	Mkms_3870	-	short-chain dehydrogenase/reductase SDR
3845	 69.64	0	4085955..4086695	+	246	119869902	-	Mkms_3871	-	short-chain dehydrogenase/reductase SDR
3846	 65.53	0	4086692..4086955	-	87	119869903	-	Mkms_3872	-	hypothetical protein
3847	 65.01	-1	4087068..4087730	-	220	119869904	-	Mkms_3873	-	hypothetical protein
3848	 63.47	-1	4087754..4088128	-	124	119869905	-	Mkms_3874	-	hypothetical protein
3849	 70.00	0	4088922..4089281	-	119	119869906	-	Mkms_3875	-	HNH endonuclease
3850	 71.43	0	4089281..4089595	-	104	119869907	-	Mkms_3876	-	hypothetical protein
3851	 70.30	0	4089612..4089941	-	109	119869908	-	Mkms_3877	-	hypothetical protein
3852	 66.67	0	4090212..4091069	-	285	119869909	-	Mkms_3878	-	phage major capsid protein, HK97
3853	 72.00	+1	4091298..4091522	-	74	119869910	-	Mkms_3879	-	hypothetical protein
3854	 70.83	0	4091522..4092169	-	215	119869911	-	Mkms_3880	-	hypothetical protein
3855	 68.49	0	4092172..4092390	-	72	119869912	-	Mkms_3881	-	hypothetical protein
3856	 67.46	0	4092368..4092619	-	83	119869913	-	Mkms_3882	-	hypothetical protein
3857	 67.38	0	4092704..4092982	-	92	119869914	-	Mkms_3883	-	hypothetical protein
3858	 65.15	-1	4093008..4093403	-	131	119869915	-	Mkms_3884	-	hypothetical protein
3859	 60.77	-2	4093396..4093938	-	180	119869916	-	Mkms_3885	-	excinuclease ABC subunit C
3860	 70.40	0	4093977..4094297	-	106	119869917	-	Mkms_3886	-	hypothetical protein
3861	 68.38	0	4094287..4094520	-	77	119869918	-	Mkms_3887	-	hypothetical protein
3862	 63.64	-1	4094517..4095341	-	274	119869919	-	Mkms_3888	-	hypothetical protein
3863	 64.04	-1	4095556..4095822	-	88	119869920	-	Mkms_3889	-	hypothetical protein
3864	 70.21	0	4096083..4097492	-	469	119869921	-	Mkms_3890	-	recombinase
3865	 66.67	0	4098693..4099460	-	255	119869922	-	Mkms_3892	-	enoyl-CoA hydratase/isomerase
3866	 67.91	0	4099491..4100537	-	348	119869923	-	Mkms_3893	-	acyl-CoA dehydrogenase domain-containing protein
3867	 69.61	0	4100569..4101384	-	271	119869924	-	Mkms_3894	-	acyl-CoA dehydrogenase domain-containing protein
3868	 69.13	0	4101362..4102783	-	473	119869925	-	Mkms_3895	-	AMP-dependent synthetase and ligase
3869	 69.81	0	4102891..4103208	+	105	119869926	-	Mkms_3896	-	ferredoxin
3870	 69.00	0	4103196..4104266	-	356	119869927	-	Mkms_3897	-	L-carnitine dehydratase/bile acid-inducible protein F
3871	 68.23	0	4104367..4105323	-	318	119869928	-	Mkms_3898	-	luciferase family protein
3872	 70.18	0	4105406..4105804	-	132	119869929	-	Mkms_3899	-	cobalamin B12-binding domain-containing protein
3873	 66.67	0	4105821..4107467	-	548	119869930	-	Mkms_3900	-	methylmalonyl-CoA mutase
3874	 67.60	0	4107611..4108468	+	285	119869931	-	Mkms_3901	-	short chain dehydrogenase
3875	 70.10	0	4108465..4109979	+	504	119869932	-	Mkms_3902	-	AMP-dependent synthetase and ligase
3876	 68.59	0	4109976..4110287	+	103	119869933	-	Mkms_3903	-	hypothetical protein
3877	 70.77	0	4110299..4111759	+	486	119869934	-	Mkms_3904	-	putative adenylate/guanylate cyclase
3878	 66.67	0	4111829..4113139	+	436	119869935	-	Mkms_3905	-	general substrate transporter
3879	 68.59	0	4113194..4114492	+	432	119869936	-	Mkms_3906	-	major facilitator superfamily transporter
3880	 68.90	0	4114500..4115573	-	357	119869937	-	Mkms_3907	-	hypothetical protein
3881	 65.60	0	4115570..4116784	-	404	119869938	-	Mkms_3908	-	cytochrome P450
3882	 70.40	0	4116872..4117861	-	329	119869939	-	Mkms_3909	-	LacI family transcription regulator
3883	 68.40	0	4117866..4119191	-	441	119869940	-	Mkms_3910	-	general substrate transporter
3884	 73.33	+1	4119237..4119716	-	159	119869941	-	Mkms_3911	-	hypothetical protein
3885	 70.14	0	4119703..4120134	-	143	119869942	-	Mkms_3912	-	hypothetical protein
3886	 60.70	-2	4120328..4121098	+	256	119869943	-	Mkms_3913	-	hypothetical protein
3887	 69.29	0	4121079..4121459	+	126	119869944	-	Mkms_3914	-	putative lipoprotein
3888	 64.72	-1	4121456..4121815	+	119	119869945	-	Mkms_3915	-	hypothetical protein
3889	 71.38	0	4121793..4123724	-	643	119869946	-	Mkms_3916	-	major facilitator superfamily transporter
3890	 74.11	+1	4123779..4124369	-	196	119869947	-	Mkms_3917	-	putative deoxyribonucleotide triphosphate pyrophosphatase
3891	 69.73	0	4124378..4125160	-	260	119869948	rph	Mkms_3918	-	ribonuclease PH
3892	 69.64	0	4125186..4125959	-	257	119869949	-	Mkms_3919	-	beta-lactamase domain-containing protein
3893	 71.06	0	4126036..4126878	-	280	119869950	-	Mkms_3920	-	glutamate racemase
3894	 69.13	0	4126875..4127564	-	229	119869951	-	Mkms_3921	-	rhomboid family protein
3895	 67.49	0	4127555..4128526	-	323	119869952	-	Mkms_3922	-	cysteine synthase
3896	 67.02	0	4128529..4128810	-	93	119869953	-	Mkms_3923	-	thiamineS protein
3897	 67.87	0	4128846..4129259	-	137	119869954	-	Mkms_3924	-	Mov34/MPN/PAD-1 family protein
3898	 74.98	+1	4129288..4130310	-	340	119869955	-	Mkms_3925	-	peptidase S58, DmpA
3899	 67.52	0	4130307..4130894	-	195	119869956	-	Mkms_3926	-	hypothetical protein
3900	 65.54	0	4130907..4131173	-	88	119869957	clpS	Mkms_3927	-	ATP-dependent Clp protease adaptor protein ClpS
3901	 72.03	+1	4131255..4132577	+	440	119869958	-	Mkms_3928	-	nicotinate phosphoribosyltransferase
3902	 73.42	+1	4132580..4134577	+	665	119869959	-	Mkms_3929	-	helicase c2
3903	 70.54	0	4134620..4136065	+	481	119869960	-	Mkms_3930	-	LpqM
3904	 68.93	0	4136069..4136776	-	235	119869961	-	Mkms_3931	-	hypothetical protein
3905	 72.48	+1	4136857..4137699	-	280	119869962	-	Mkms_3932	-	hydrolase
3906	 68.83	0	4137696..4140278	-	860	119869963	-	Mkms_3933	-	alpha-glucan phosphorylases
3907	 67.67	0	4140473..4142560	+	695	119869964	-	Mkms_3934	-	alpha amylase, catalytic region
3908	 68.42	0	4142569..4144848	+	759	119869965	-	Mkms_3935	-	glycogen branching enzyme
3909	 71.56	0	4144855..4145754	-	299	119869966	-	Mkms_3936	-	thioredoxin domain-containing protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.