IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3745	 64.78	-1	3988343..3989560	+	405	119869802	-	Mkms_3771	-	cytochrome P450
3746	 67.83	0	3989565..3990335	+	256	119869803	-	Mkms_3772	-	esterase EstC, putative
3747	 63.13	-1	3990332..3990784	-	150	119869804	-	Mkms_3773	-	hypothetical protein
3748	 63.81	-1	3990781..3991305	-	174	119869805	-	Mkms_3774	-	hypothetical protein
3749	 63.89	-1	3991302..3992669	-	455	119869806	-	Mkms_3775	-	Rieske (2Fe-2S) domain-containing protein
3750	 66.50	0	3992955..3993554	+	199	119869807	-	Mkms_3776	-	TetR family transcriptional regulator
3751	 67.01	0	3993576..3993863	-	95	119869808	-	Mkms_3777	-	hypothetical protein
3752	 66.67	0	3993882..3994073	-	63	119869809	-	Mkms_3778	-	ferredoxin 1
3753	 67.97	0	3994070..3995377	-	435	119869810	-	Mkms_3779	-	cytochrome P450
3754	 69.49	0	3995472..3996002	-	176	119869811	-	Mkms_3780	-	carboxymuconolactone decarboxylase
3755	 68.20	0	3995999..3996844	-	281	119869812	-	Mkms_3781	-	taurine catabolism dioxygenase TauD/TfdA
3756	 64.55	-1	3996864..3997193	-	109	119869813	-	Mkms_3782	-	hypothetical protein
3757	 64.24	-1	3997190..3998467	-	425	119869814	-	Mkms_3783	-	Rieske (2Fe-2S) domain-containing protein
3758	 67.74	0	3998504..3999247	-	247	119869815	-	Mkms_3784	-	short-chain dehydrogenase/reductase SDR
3759	 66.86	0	3999258..4000277	-	339	119869816	-	Mkms_3785	-	ferredoxin
3760	 68.06	0	4000342..4001421	+	359	119869817	-	Mkms_3786	-	dihydrodipicolinate reductase
3761	 68.43	0	4001425..4001877	-	150	119869818	-	Mkms_3787	-	MarR family transcriptional regulator
3762	 70.18	0	4001921..4003174	-	417	119869819	-	Mkms_3788	-	amidohydrolase
3763	 62.15	-1	4003171..4003524	-	117	119869820	-	Mkms_3789	-	hypothetical protein
3764	 63.62	-1	4003521..4004798	-	425	119869821	-	Mkms_3790	-	Rieske (2Fe-2S) domain-containing protein
3765	 70.85	0	4004947..4006428	+	493	119869822	-	Mkms_3791	-	aldehyde dehydrogenase
3766	 64.04	-1	4006439..4007200	+	253	119869823	-	Mkms_3792	-	hypothetical protein
3767	 65.32	-1	4007211..4008176	-	321	119869824	-	Mkms_3793	-	integrase catalytic subunit
3768	 64.67	-1	4008280..4009482	-	400	119869825	-	Mkms_3794	-	cytochrome P450
3769	 64.37	-1	4009507..4010115	-	202	119869826	-	Mkms_3795	-	TetR family transcriptional regulator
3770	 63.31	-1	4010223..4011353	+	376	119869827	-	Mkms_3796	-	hypothetical protein
3771	 63.18	-1	4011405..4012007	-	200	119869828	-	Mkms_3797	-	TetR family transcriptional regulator
3772	 62.11	-1	4012142..4013305	+	387	119869829	-	Mkms_3798	-	hypothetical protein
3773	 67.14	0	4013306..4014154	+	282	119869830	-	Mkms_3799	-	ATPase
3774	 67.66	0	4014151..4015863	+	570	119869831	-	Mkms_3800	-	von Willebrand factor, type A
3775	 70.56	0	4015876..4016619	-	247	119869832	-	Mkms_3801	-	alpha/beta hydrolase fold
3776	 66.45	0	4016720..4017643	+	307	119869833	-	Mkms_3802	-	NAD-dependent epimerase/dehydratase
3777	 70.97	0	4017655..4018398	+	247	119869834	-	Mkms_3803	-	hypothetical protein
3778	 70.85	0	4018411..4019367	+	318	119869835	-	Mkms_3804	-	luciferase family protein
3779	 67.81	0	4019402..4020718	-	438	119869836	-	Mkms_3805	-	hypothetical protein
3780	 68.86	0	4020763..4021308	-	181	119869837	-	Mkms_3806	-	hypothetical protein
3781	 68.82	0	4021384..4022034	+	216	119869838	-	Mkms_3807	-	TetR family transcriptional regulator
3782	 66.13	0	4022053..4023354	+	433	119869839	-	Mkms_3808	-	acyl-CoA dehydrogenase domain-containing protein
3783	 69.04	0	4023351..4024403	+	350	119869840	-	Mkms_3809	-	aminoglycoside phosphotransferase
3784	 72.60	+1	4024400..4025377	+	325	119869841	-	Mkms_3810	-	alcohol dehydrogenase
3785	 72.13	+1	4025374..4025904	-	176	119869842	-	Mkms_3811	-	hypothetical protein
3786	 67.30	0	4025901..4026533	-	210	119869843	-	Mkms_3812	-	TetR family transcriptional regulator
3787	 67.45	0	4026660..4027808	-	382	119869844	-	Mkms_3813	-	acyl-CoA dehydrogenase domain-containing protein
3788	 70.57	0	4027839..4028990	-	383	119869845	-	Mkms_3814	-	acetyl-CoA acetyltransferases
3789	 69.31	0	4029020..4030228	-	402	119869846	-	Mkms_3815	-	L-carnitine dehydratase/bile acid-inducible protein F
3790	 69.55	0	4030228..4030989	-	253	119869847	-	Mkms_3816	-	short-chain dehydrogenase/reductase SDR
3791	 64.12	-1	4030991..4032205	-	404	119869848	-	Mkms_3817	-	acyl-CoA dehydrogenase domain-containing protein
3792	 64.28	-1	4032262..4033560	-	432	119869849	-	Mkms_3818	-	amidohydrolase 2
3793	 67.42	0	4033796..4034326	+	176	119869850	-	Mkms_3819	-	carboxymuconolactone decarboxylase
3794	 63.49	-1	4034333..4035655	+	440	119869851	-	Mkms_3820	-	Rieske (2Fe-2S) domain-containing protein
3795	 63.19	-1	4035648..4035992	+	114	119869852	-	Mkms_3821	-	hypothetical protein
3796	 67.64	0	4036075..4037301	+	408	119869853	-	Mkms_3822	-	amidohydrolase
3797	 65.10	-1	4037285..4037731	+	148	119869854	-	Mkms_3823	-	hypothetical protein
3798	 67.63	0	4037728..4038870	+	380	119869855	-	Mkms_3824	-	acyl-CoA dehydrogenase domain-containing protein
3799	 70.27	0	4038867..4039670	+	267	119869856	-	Mkms_3825	-	acyl-CoA dehydrogenase domain-containing protein
3800	 67.05	0	4039698..4040480	-	260	119869857	-	Mkms_3826	-	enoyl-CoA hydratase
3801	 69.20	0	4040490..4041671	-	393	119869858	-	Mkms_3827	-	acyl-CoA dehydrogenase domain-containing protein
3802	 66.53	0	4041793..4042512	+	239	119869859	-	Mkms_3828	-	TetR family transcriptional regulator
3803	 66.43	0	4042729..4043565	+	278	119869860	-	Mkms_3829	-	short-chain dehydrogenase/reductase SDR
3804	 68.46	0	4043738..4045189	+	483	119869861	-	Mkms_3830	-	diacylglycerol O-acyltransferase
3805	 69.46	0	4045186..4046832	-	548	119869862	-	Mkms_3831	-	acyl-CoA synthetase
3806	 69.07	0	4046829..4047659	-	276	119869863	-	Mkms_3832	-	phospholipid/glycerol acyltransferase
3807	 71.16	0	4047769..4048836	+	355	119869864	-	Mkms_3833	-	NAD-dependent epimerase/dehydratase
3808	 72.00	+1	4048833..4049639	-	268	119869865	-	Mkms_3834	-	short-chain dehydrogenase/reductase SDR
3809	 70.98	0	4049656..4052091	-	811	119869866	-	Mkms_3835	-	L-carnitine dehydratase/bile acid-inducible protein F
3810	 64.63	-1	4052094..4053077	-	327	119869867	-	Mkms_3836	-	enoyl-CoA hydratase/isomerase
3811	 69.75	0	4053070..4054203	-	377	119869868	-	Mkms_3837	-	peptidase M24
3812	 68.32	0	4054193..4055461	-	422	119869869	-	Mkms_3838	-	peptidase M24
3813	 64.19	-1	4055461..4056633	-	390	119869870	-	Mkms_3839	-	amidohydrolase 2
3814	 67.47	0	4056667..4057905	-	412	119869871	-	Mkms_3840	-	cytochrome P450
3815	 66.67	0	4057907..4058101	-	64	119869872	-	Mkms_3841	-	putative ferredoxin
3816	 68.64	0	4058101..4058808	-	235	119869873	-	Mkms_3842	-	TetR family transcriptional regulator
3817	 68.55	0	4058805..4059653	-	282	119869874	-	Mkms_3843	-	short-chain dehydrogenase/reductase SDR
3818	 70.44	0	4059653..4060501	-	282	119869875	-	Mkms_3844	-	alpha/beta hydrolase fold
3819	 62.02	-2	4060565..4061854	-	429	119869876	-	Mkms_3845	-	N-6 DNA methylase
3820	 59.29	-2	4062065..4062484	-	139	119869877	-	Mkms_3846	-	hypothetical protein
3821	 67.48	0	4062481..4063338	-	285	119869878	-	Mkms_3847	-	hypothetical protein
3822	 65.15	-1	4063666..4063995	-	109	119869879	-	Mkms_3848	-	hypothetical protein
3823	 60.84	-2	4064037..4064345	-	102	119869880	-	Mkms_3849	-	hypothetical protein
3824	 56.83	-2	4064342..4065601	-	419	119869881	-	Mkms_3850	-	restriction endonuclease S subunits-like protein
3825	 64.44	-1	4065598..4065912	-	104	119869882	-	Mkms_3851	-	type I site-specific deoxyribonuclease
3826	 64.18	-1	4065909..4068320	-	803	119869883	-	Mkms_3852	-	type III restriction enzyme, res subunit
3827	 69.59	0	4068524..4069105	-	193	119869884	-	Mkms_3853	-	NADPH-dependent FMN reductase
3828	 67.68	0	4069117..4070106	-	329	119869885	-	Mkms_3854	-	hypothetical protein
3829	 69.45	0	4070108..4070932	-	274	119869886	-	Mkms_3855	-	3-alpha-hydroxysteroid dehydrogenase
3830	 66.97	0	4070941..4072251	-	436	119869887	-	Mkms_3856	-	luciferase family protein
3831	 68.74	0	4072248..4074029	-	593	119869888	-	Mkms_3857	-	3-ketosteroid-delta-1-dehydrogenase
3832	 68.98	0	4074026..4074976	-	316	119869889	-	Mkms_3858	-	3-(2,3-dihydroxyphenyl)propionate dioxygenase
3833	 68.99	0	4074891..4076612	-	573	119869890	-	Mkms_3859	-	3-(3-hydroxyphenyl)propionate hydroxylase
3834	 68.17	0	4076612..4077475	-	287	119869891	-	Mkms_3860	-	alpha/beta hydrolase fold
3835	 68.33	0	4077534..4078316	+	260	119869892	-	Mkms_3861	-	regulatory proteins, IclR
3836	 70.97	0	4078348..4079949	+	533	119869893	-	Mkms_3862	-	fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
3837	 62.96	-1	4079976..4080272	-	98	119869894	-	Mkms_3863	-	hypothetical protein
3838	 60.30	-2	4080276..4080872	-	198	119869895	-	Mkms_3864	-	cytochrome c oxidase, subunit III
3839	 63.38	-1	4080869..4081690	-	273	119869896	-	Mkms_3865	-	hypothetical protein
3840	 63.99	-1	4081687..4082397	-	236	119869897	-	Mkms_3866	-	hypothetical protein
3841	 67.88	0	4082502..4083077	+	191	119869898	-	Mkms_3867	-	TetR family transcriptional regulator
3842	 72.39	+1	4083079..4083951	-	290	119869899	-	Mkms_3868	-	LAO/AO transport system ATPase
3843	 70.05	0	4083964..4085115	-	383	119869900	-	Mkms_3869	-	acetyl-CoA acetyltransferases
3844	 68.37	0	4085194..4085958	+	254	119869901	-	Mkms_3870	-	short-chain dehydrogenase/reductase SDR
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.