IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3677	 67.44	0	3907974..3909134	-	386	119869734	-	Mkms_3702	-	acyl-CoA dehydrogenase domain-containing protein
3678	 71.34	0	3909131..3911119	-	662	119869735	-	Mkms_3703	-	carbamoyl-phosphate synthase L chain, ATP-binding
3679	 67.70	0	3911124..3912674	-	516	119869736	-	Mkms_3704	-	propionyl-CoA carboxylase
3680	 69.23	0	3912771..3913394	+	207	119869737	-	Mkms_3705	-	TetR family transcriptional regulator
3681	 55.77	-2	3913391..3913546	-	51	119869738	-	Mkms_3706	-	hypothetical protein
3682	 60.48	-2	3913583..3913792	-	69	119869739	-	Mkms_3707	-	hypothetical protein
3683	 68.56	0	3913888..3915846	-	652	119869740	-	Mkms_3708	-	peptidase S9 prolyl oligopeptidase
3684	 69.42	0	3915911..3916672	+	253	119869741	-	Mkms_3709	-	hypothetical protein
3685	 70.62	0	3916640..3918004	-	454	119869742	-	Mkms_3710	-	major facilitator superfamily transporter
3686	 69.89	0	3918074..3918880	+	268	119869743	-	Mkms_3711	-	short-chain dehydrogenase/reductase SDR
3687	 69.47	0	3918986..3920554	-	522	119869744	-	Mkms_3712	-	protein of unknown function DUF853, NPT hydrolase putative
3688	 66.36	0	3920635..3921282	+	215	119869745	-	Mkms_3713	-	oligoribonuclease
3689	 66.01	0	3921451..3922671	-	406	119869746	-	Mkms_3714	-	ErfK/YbiS/YcfS/YnhG family protein
3690	 76.59	+2	3923014..3926922	-	1302	119869747	-	Mkms_3715	-	PE-PGRS family protein
3691	 69.37	0	3927689..3927910	-	73	119869748	-	Mkms_3716	-	hypothetical protein
3692	 66.03	0	3928022..3928495	+	157	119869749	-	Mkms_3717	-	redoxin domain-containing protein
3693	 71.15	0	3928492..3929853	-	453	119869750	-	Mkms_3718	-	hypothetical protein
3694	 66.42	0	3929934..3930752	-	272	119869751	-	Mkms_3719	-	formate/nitrate transporter
3695	 68.70	0	3930823..3931215	-	130	119869752	acpS	Mkms_3720	-	4'-phosphopantetheinyl transferase
3696	 70.55	0	3931259..3940492	-	3077	119869753	-	Mkms_3721	-	fatty acid synthase
3697	 68.10	0	3941014..3941709	-	231	119869754	-	Mkms_3722	-	hypothetical protein
3698	 69.36	0	3941800..3942579	-	259	119869755	-	Mkms_3723	-	MerR family transcriptional regulator
3699	 69.71	0	3942856..3944136	+	426	119869756	-	Mkms_3724	-	major facilitator superfamily transporter
3700	 67.14	0	3944133..3944552	-	139	119869757	-	Mkms_3725	-	ChaB family protein
3701	 63.02	-1	3944666..3945295	-	209	119869758	-	Mkms_3726	-	twin-arginine translocation pathway signal
3702	 67.93	0	3945292..3946161	-	289	119869759	-	Mkms_3727	-	hypothetical protein
3703	 67.63	0	3946322..3947773	-	483	119869760	-	Mkms_3728	-	acyl-CoA synthetase
3704	 63.90	-1	3947770..3948960	-	396	119869761	-	Mkms_3729	-	amidohydrolase 2
3705	 69.02	0	3948996..3950567	-	523	119869762	-	Mkms_3730	-	AMP-dependent synthetase and ligase
3706	 70.99	0	3950685..3951401	+	238	119869763	-	Mkms_3731	-	short chain enoyl-CoA hydratase
3707	 67.87	0	3951514..3951927	+	137	119869764	-	Mkms_3732	-	hypothetical protein
3708	 66.58	0	3951953..3953095	+	380	119869765	-	Mkms_3733	-	thiolase
3709	 64.94	-1	3953148..3953609	+	153	119869766	-	Mkms_3734	-	hypothetical protein
3710	 65.62	0	3953567..3954235	-	222	119869767	-	Mkms_3735	-	TetR family transcriptional regulator
3711	 65.42	0	3954421..3955701	+	426	119869768	-	Mkms_3736	-	cytochrome P450
3712	 67.47	0	3955920..3956294	-	124	119869769	-	Mkms_3737	-	hypothetical protein
3713	 62.38	-1	3956406..3956942	+	178	119869770	-	Mkms_3738	-	hypothetical protein
3714	 67.37	0	3957222..3958916	-	564	119869771	-	Mkms_3739	-	virulence factor Mce family protein
3715	 67.18	0	3958916..3960280	-	454	119869772	-	Mkms_3740	-	virulence factor Mce family protein
3716	 66.46	0	3960298..3961782	-	494	119869773	-	Mkms_3741	-	virulence factor Mce family protein
3717	 63.95	-1	3961766..3962869	-	367	119869774	-	Mkms_3742	-	virulence factor Mce family protein
3718	 61.31	-2	3962870..3963895	-	341	119869775	-	Mkms_3743	-	virulence factor Mce family protein
3719	 63.49	-1	3963892..3965088	-	398	119869776	-	Mkms_3744	-	virulence factor Mce family protein
3720	 64.69	-1	3965099..3965956	-	285	119869777	-	Mkms_3745	-	hypothetical protein
3721	 67.16	0	3965970..3966782	-	270	119869778	-	Mkms_3746	-	hypothetical protein
3722	 68.82	0	3967145..3968353	-	402	119869779	-	Mkms_3748	-	L-carnitine dehydratase/bile acid-inducible protein F
3723	 67.99	0	3968385..3969890	-	501	119869780	-	Mkms_3749	-	aldehyde dehydrogenase
3724	 68.52	0	3970149..3970850	+	233	119869781	-	Mkms_3750	-	short-chain dehydrogenase/reductase SDR
3725	 67.36	0	3970900..3971760	+	286	119869782	-	Mkms_3751	-	short-chain dehydrogenase/reductase SDR
3726	 62.12	-1	3971800..3971997	+	65	119869783	-	Mkms_3752	-	hypothetical protein
3727	 65.79	0	3972046..3973419	+	457	119869784	-	Mkms_3753	-	cytochrome P450
3728	 63.95	-1	3973484..3973924	+	146	119869785	-	Mkms_3754	-	hypothetical protein
3729	 66.67	0	3974077..3974415	+	112	119869786	-	Mkms_3755	-	hypothetical protein
3730	 67.43	0	3974438..3975613	-	391	119869787	-	Mkms_3756	-	acyl-CoA dehydrogenase domain-containing protein
3731	 69.67	0	3975597..3976595	-	332	119869788	-	Mkms_3757	-	acyl-CoA dehydrogenase domain-containing protein
3732	 66.13	0	3976864..3977976	+	370	119869789	-	Mkms_3758	-	amidohydrolase 2
3733	 64.04	-1	3977996..3979138	+	380	119869790	-	Mkms_3759	-	amidohydrolase 2
3734	 67.44	0	3979142..3979531	+	129	119869791	-	Mkms_3760	-	Rieske (2Fe-2S) domain-containing protein
3735	 66.02	0	3979528..3980448	+	306	119869792	-	Mkms_3761	-	hypothetical protein
3736	 71.94	+1	3980454..3980927	-	157	119869793	-	Mkms_3762	-	hypothetical protein
3737	 72.04	+1	3980965..3982266	+	433	119869794	-	Mkms_3763	-	respiratory-chain NADH dehydrogenase domain-containing protein
3738	 66.98	0	3982263..3982577	+	104	119869795	-	Mkms_3764	-	hypothetical protein
3739	 69.93	0	3982580..3984232	+	550	119869796	-	Mkms_3765	-	hypothetical protein
3740	 70.66	0	3984229..3985179	+	316	119869797	-	Mkms_3766	-	hypothetical protein
3741	 70.21	0	3985180..3985998	+	272	119869798	-	Mkms_3767	-	6-phosphogluconate dehydrogenase, NAD-binding
3742	 73.87	+1	3985995..3986813	+	272	119869799	-	Mkms_3768	-	6-phosphogluconate dehydrogenase, NAD-binding
3743	 66.08	0	3986915..3988117	+	400	119869800	-	Mkms_3769	-	cytochrome P450
3744	 59.70	-2	3988114..3988314	+	66	119869801	-	Mkms_3770	-	hypothetical protein
3745	 64.78	-1	3988343..3989560	+	405	119869802	-	Mkms_3771	-	cytochrome P450
3746	 67.83	0	3989565..3990335	+	256	119869803	-	Mkms_3772	-	esterase EstC, putative
3747	 63.13	-1	3990332..3990784	-	150	119869804	-	Mkms_3773	-	hypothetical protein
3748	 63.81	-1	3990781..3991305	-	174	119869805	-	Mkms_3774	-	hypothetical protein
3749	 63.89	-1	3991302..3992669	-	455	119869806	-	Mkms_3775	-	Rieske (2Fe-2S) domain-containing protein
3750	 66.50	0	3992955..3993554	+	199	119869807	-	Mkms_3776	-	TetR family transcriptional regulator
3751	 67.01	0	3993576..3993863	-	95	119869808	-	Mkms_3777	-	hypothetical protein
3752	 66.67	0	3993882..3994073	-	63	119869809	-	Mkms_3778	-	ferredoxin 1
3753	 67.97	0	3994070..3995377	-	435	119869810	-	Mkms_3779	-	cytochrome P450
3754	 69.49	0	3995472..3996002	-	176	119869811	-	Mkms_3780	-	carboxymuconolactone decarboxylase
3755	 68.20	0	3995999..3996844	-	281	119869812	-	Mkms_3781	-	taurine catabolism dioxygenase TauD/TfdA
3756	 64.55	-1	3996864..3997193	-	109	119869813	-	Mkms_3782	-	hypothetical protein
3757	 64.24	-1	3997190..3998467	-	425	119869814	-	Mkms_3783	-	Rieske (2Fe-2S) domain-containing protein
3758	 67.74	0	3998504..3999247	-	247	119869815	-	Mkms_3784	-	short-chain dehydrogenase/reductase SDR
3759	 66.86	0	3999258..4000277	-	339	119869816	-	Mkms_3785	-	ferredoxin
3760	 68.06	0	4000342..4001421	+	359	119869817	-	Mkms_3786	-	dihydrodipicolinate reductase
3761	 68.43	0	4001425..4001877	-	150	119869818	-	Mkms_3787	-	MarR family transcriptional regulator
3762	 70.18	0	4001921..4003174	-	417	119869819	-	Mkms_3788	-	amidohydrolase
3763	 62.15	-1	4003171..4003524	-	117	119869820	-	Mkms_3789	-	hypothetical protein
3764	 63.62	-1	4003521..4004798	-	425	119869821	-	Mkms_3790	-	Rieske (2Fe-2S) domain-containing protein
3765	 70.85	0	4004947..4006428	+	493	119869822	-	Mkms_3791	-	aldehyde dehydrogenase
3766	 64.04	-1	4006439..4007200	+	253	119869823	-	Mkms_3792	-	hypothetical protein
3767	 65.32	-1	4007211..4008176	-	321	119869824	-	Mkms_3793	-	integrase catalytic subunit
3768	 64.67	-1	4008280..4009482	-	400	119869825	-	Mkms_3794	-	cytochrome P450
3769	 64.37	-1	4009507..4010115	-	202	119869826	-	Mkms_3795	-	TetR family transcriptional regulator
3770	 63.31	-1	4010223..4011353	+	376	119869827	-	Mkms_3796	-	hypothetical protein
3771	 63.18	-1	4011405..4012007	-	200	119869828	-	Mkms_3797	-	TetR family transcriptional regulator
3772	 62.11	-1	4012142..4013305	+	387	119869829	-	Mkms_3798	-	hypothetical protein
3773	 67.14	0	4013306..4014154	+	282	119869830	-	Mkms_3799	-	ATPase
3774	 67.66	0	4014151..4015863	+	570	119869831	-	Mkms_3800	-	von Willebrand factor, type A
3775	 70.56	0	4015876..4016619	-	247	119869832	-	Mkms_3801	-	alpha/beta hydrolase fold
3776	 66.45	0	4016720..4017643	+	307	119869833	-	Mkms_3802	-	NAD-dependent epimerase/dehydratase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.