IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3607	 71.27	0	3823305..3824564	-	419	119869664	-	Mkms_3632	-	saccharopine dehydrogenase
3608	 71.61	0	3824575..3826575	-	666	119869665	-	Mkms_3633	-	peptidase S9 prolyl oligopeptidase
3609	 73.59	+1	3826618..3827787	+	389	119869666	-	Mkms_3634	-	monooxygenase, FAD-binding
3610	 72.57	+1	3827784..3828257	+	157	119869667	-	Mkms_3635	-	hypothetical protein
3611	 69.96	0	3828226..3828741	-	171	119869668	-	Mkms_3636	-	transglycosylase domain-containing protein
3612	 67.23	0	3828949..3829305	-	118	119869669	-	Mkms_3637	-	transglycosylase domain-containing protein
3613	 71.07	0	3830256..3830846	-	196	119869670	-	Mkms_3638	-	molybdopterin-guanine dinucleotide biosynthesis protein A
3614	 67.30	0	3830857..3831963	-	368	119869671	-	Mkms_3639	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
3615	 68.43	0	3831960..3833891	-	643	119869672	-	Mkms_3640	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
3616	 65.84	0	3834451..3835539	-	362	119869673	-	Mkms_3641	-	dihydrodipicolinate reductase
3617	 67.45	0	3835546..3836571	-	341	119869674	-	Mkms_3642	-	Rieske (2Fe-2S) domain-containing protein
3618	 72.27	+1	3836617..3837276	+	219	119869675	-	Mkms_3643	-	TetR family transcriptional regulator
3619	 72.07	+1	3837355..3838446	+	363	119869676	-	Mkms_3644	-	putative lipoprotein
3620	 69.33	0	3838456..3839280	+	274	119869677	-	Mkms_3645	-	formate dehydrogenase accessory protein
3621	 71.19	0	3839375..3840679	+	434	119869678	-	Mkms_3646	-	glycosyl transferase family protein
3622	 70.93	0	3840824..3841198	+	124	119869679	-	Mkms_3647	-	Rieske (2Fe-2S) domain-containing protein
3623	 65.65	0	3841297..3842382	+	361	119869680	-	Mkms_3648	-	fatty acid desaturase
3624	 64.72	-1	3842434..3843714	-	426	119869681	clpX	Mkms_3649	-	ATP-dependent protease ATP-binding subunit
3625	 64.97	-1	3844020..3844667	-	215	119869682	-	Mkms_3650	-	ATP-dependent Clp protease proteolytic subunit
3626	 66.67	0	3844667..3845254	-	195	119869683	clpP	Mkms_3651	-	ATP-dependent Clp protease proteolytic subunit
3627	 68.55	0	3845391..3846827	-	478	119869684	tig	Mkms_3652	-	trigger factor
3628	 67.32	0	3847252..3848634	-	460	119869685	-	Mkms_3653	-	hypothetical protein
3629	 68.69	0	3849038..3851413	+	791	119869686	-	Mkms_3654	-	hypothetical protein
3630	 68.32	0	3851403..3852794	-	463	119869687	-	Mkms_3655	-	hypothetical protein
3631	 63.51	-1	3852799..3853431	-	210	119869688	-	Mkms_3656	-	di-trans-poly-cis-decaprenylcistransferase
3632	 67.19	0	3853499..3855013	-	504	119869689	-	Mkms_3657	-	undecaprenyl-phosphate galactose phosphotransferase
3633	 63.36	-1	3855176..3855871	-	231	119869690	-	Mkms_3658	-	putative GAF sensor protein
3634	 69.79	0	3855998..3857149	+	383	119869691	-	Mkms_3659	-	glycosyl transferase, group 1
3635	 69.88	0	3857146..3858732	+	528	119869692	-	Mkms_3660	-	hypothetical protein
3636	 67.82	0	3858686..3859981	-	431	119869693	-	Mkms_3661	-	hypothetical protein
3637	 69.41	0	3859984..3861150	-	388	119869694	-	Mkms_3662	-	hypothetical protein
3638	 69.53	0	3861143..3862261	-	372	119869695	-	Mkms_3663	-	glycosyl transferase, group 1
3639	 68.34	0	3862258..3863511	-	417	119869696	-	Mkms_3664	-	hypothetical protein
3640	 70.14	0	3863730..3865688	+	652	119869697	-	Mkms_3665	-	hypothetical protein
3641	 67.49	0	3865692..3865934	-	80	119869698	-	Mkms_3666	-	hypothetical protein
3642	 66.25	0	3866017..3868173	-	718	119869699	-	Mkms_3667	-	molybdopterin oxidoreductase
3643	 70.10	0	3868353..3869546	+	397	119869700	-	Mkms_3668	-	beta-lactamase
3644	 71.85	+1	3869594..3870364	+	256	119869701	-	Mkms_3669	-	hypothetical protein
3645	 69.88	0	3870374..3872056	-	560	119869702	-	Mkms_3670	-	sodium/hydrogen exchanger
3646	 71.25	0	3872100..3872906	-	268	119869703	-	Mkms_3671	-	formamidopyrimidine-DNA glycolase
3647	 69.53	0	3872910..3873398	-	162	119869704	-	Mkms_3672	-	ribose-5-phosphate isomerase B
3648	 71.70	0	3873408..3874361	-	317	119869705	-	Mkms_3673	-	2OG-Fe(II) oxygenase
3649	 68.39	0	3874358..3874822	-	154	119869706	-	Mkms_3674	-	CMP/dCMP deaminase, zinc-binding
3650	 66.61	0	3874870..3876678	-	602	119869707	-	Mkms_3675	-	AMP-dependent synthetase and ligase
3651	 66.99	0	3876796..3877416	-	206	119869708	-	Mkms_3676	-	DSBA oxidoreductase
3652	 69.03	0	3877640..3878020	+	126	119869709	-	Mkms_3677	-	hypothetical protein
3653	 68.66	0	3878031..3880634	+	867	119869710	-	Mkms_3678	-	aminopeptidase N
3654	 70.54	0	3880697..3881083	+	128	119869711	-	Mkms_3679	-	HNH nuclease
3655	 70.37	0	3881072..3881557	-	161	119869712	-	Mkms_3680	-	hypothetical protein
3656	 66.30	0	3881544..3881813	-	89	119869713	-	Mkms_3681	-	hypothetical protein
3657	 70.25	0	3881853..3882521	-	222	119869714	-	Mkms_3682	-	HNH endonuclease
3658	 66.67	0	3882663..3883058	+	131	119869715	-	Mkms_3683	-	globin
3659	 70.43	0	3883074..3884693	+	539	119869716	-	Mkms_3684	-	alpha amylase, catalytic region
3660	 71.82	+1	3884690..3885349	-	219	119869717	-	Mkms_3685	-	hypothetical protein
3661	 63.29	-1	3885346..3885759	-	137	119869718	-	Mkms_3686	-	hypothetical protein
3662	 68.83	0	3885756..3890615	-	1619	119869719	-	Mkms_3687	-	glutamate dehydrogenase (NAD)
3663	 65.77	0	3890710..3892383	-	557	119869720	-	Mkms_3688	-	putative ABC transporter ATP-binding protein
3664	 71.60	0	3892460..3892966	-	168	119869721	-	Mkms_3689	-	hypothetical protein
3665	 72.47	+1	3893112..3895109	-	665	119869722	-	Mkms_3690	-	copper resistance D domain-containing protein
3666	 67.59	0	3895136..3897508	-	790	119869723	-	Mkms_3691	-	glycerol-3-phosphate acyltransferase
3667	 67.32	0	3897505..3899190	-	561	119869724	-	Mkms_3692	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3668	 70.58	0	3899187..3900668	-	493	119869725	-	Mkms_3693	-	diacylglycerol O-acyltransferase
3669	 72.34	+1	3900913..3901794	-	293	119869726	-	Mkms_3694	-	UspA domain-containing protein
3670	 64.64	-1	3901963..3902406	+	147	119869727	-	Mkms_3695	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
3671	 73.17	+1	3902547..3903299	+	250	119869728	-	Mkms_3696	-	enoyl-CoA hydratase
3672	 70.82	0	3903301..3904455	-	384	119869729	-	Mkms_3697	-	branched-chain alpha-keto acid dehydrogenase subunit E2
3673	 68.95	0	3904452..3905501	-	349	119869730	-	Mkms_3698	-	transketolase, central region
3674	 71.99	+1	3905503..3906573	-	356	119869731	-	Mkms_3699	-	pyruvate dehydrogenase (acetyl-transferring)
3675	 70.33	0	3906677..3907495	-	272	119869732	-	Mkms_3700	-	HpcH/HpaI aldolase
3676	 66.05	0	3907492..3907977	-	161	119869733	-	Mkms_3701	-	dehydratase
3677	 67.44	0	3907974..3909134	-	386	119869734	-	Mkms_3702	-	acyl-CoA dehydrogenase domain-containing protein
3678	 71.34	0	3909131..3911119	-	662	119869735	-	Mkms_3703	-	carbamoyl-phosphate synthase L chain, ATP-binding
3679	 67.70	0	3911124..3912674	-	516	119869736	-	Mkms_3704	-	propionyl-CoA carboxylase
3680	 69.23	0	3912771..3913394	+	207	119869737	-	Mkms_3705	-	TetR family transcriptional regulator
3681	 55.77	-2	3913391..3913546	-	51	119869738	-	Mkms_3706	-	hypothetical protein
3682	 60.48	-2	3913583..3913792	-	69	119869739	-	Mkms_3707	-	hypothetical protein
3683	 68.56	0	3913888..3915846	-	652	119869740	-	Mkms_3708	-	peptidase S9 prolyl oligopeptidase
3684	 69.42	0	3915911..3916672	+	253	119869741	-	Mkms_3709	-	hypothetical protein
3685	 70.62	0	3916640..3918004	-	454	119869742	-	Mkms_3710	-	major facilitator superfamily transporter
3686	 69.89	0	3918074..3918880	+	268	119869743	-	Mkms_3711	-	short-chain dehydrogenase/reductase SDR
3687	 69.47	0	3918986..3920554	-	522	119869744	-	Mkms_3712	-	protein of unknown function DUF853, NPT hydrolase putative
3688	 66.36	0	3920635..3921282	+	215	119869745	-	Mkms_3713	-	oligoribonuclease
3689	 66.01	0	3921451..3922671	-	406	119869746	-	Mkms_3714	-	ErfK/YbiS/YcfS/YnhG family protein
3690	 76.59	+2	3923014..3926922	-	1302	119869747	-	Mkms_3715	-	PE-PGRS family protein
3691	 69.37	0	3927689..3927910	-	73	119869748	-	Mkms_3716	-	hypothetical protein
3692	 66.03	0	3928022..3928495	+	157	119869749	-	Mkms_3717	-	redoxin domain-containing protein
3693	 71.15	0	3928492..3929853	-	453	119869750	-	Mkms_3718	-	hypothetical protein
3694	 66.42	0	3929934..3930752	-	272	119869751	-	Mkms_3719	-	formate/nitrate transporter
3695	 68.70	0	3930823..3931215	-	130	119869752	acpS	Mkms_3720	-	4'-phosphopantetheinyl transferase
3696	 70.55	0	3931259..3940492	-	3077	119869753	-	Mkms_3721	-	fatty acid synthase
3697	 68.10	0	3941014..3941709	-	231	119869754	-	Mkms_3722	-	hypothetical protein
3698	 69.36	0	3941800..3942579	-	259	119869755	-	Mkms_3723	-	MerR family transcriptional regulator
3699	 69.71	0	3942856..3944136	+	426	119869756	-	Mkms_3724	-	major facilitator superfamily transporter
3700	 67.14	0	3944133..3944552	-	139	119869757	-	Mkms_3725	-	ChaB family protein
3701	 63.02	-1	3944666..3945295	-	209	119869758	-	Mkms_3726	-	twin-arginine translocation pathway signal
3702	 67.93	0	3945292..3946161	-	289	119869759	-	Mkms_3727	-	hypothetical protein
3703	 67.63	0	3946322..3947773	-	483	119869760	-	Mkms_3728	-	acyl-CoA synthetase
3704	 63.90	-1	3947770..3948960	-	396	119869761	-	Mkms_3729	-	amidohydrolase 2
3705	 69.02	0	3948996..3950567	-	523	119869762	-	Mkms_3730	-	AMP-dependent synthetase and ligase
3706	 70.99	0	3950685..3951401	+	238	119869763	-	Mkms_3731	-	short chain enoyl-CoA hydratase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.