IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
315	 70.40	0	351099..352517	-	472	119866372	-	Mkms_0317	-	betaine-aldehyde dehydrogenase
316	 68.02	0	352532..353638	-	368	119866373	-	Mkms_0318	-	alcohol dehydrogenase
317	 68.09	0	353651..355264	-	537	119866374	-	Mkms_0319	-	acyl-CoA synthetase
318	 68.21	0	355332..357215	+	627	119866375	-	Mkms_0320	-	hypothetical protein
319	 69.14	0	357212..358099	+	295	119866376	-	Mkms_0321	-	short-chain dehydrogenase/reductase SDR
320	 66.83	0	358105..358725	-	206	119866377	-	Mkms_0322	-	stress responsive alpha-beta barrel domain-containing protein
321	 68.71	0	358718..359059	-	113	119866378	-	Mkms_0323	-	hypothetical protein
322	 70.31	0	359052..359984	-	310	119866379	-	Mkms_0324	-	alpha/beta hydrolase domain-containing protein
323	 72.59	+1	359981..360841	-	286	119866380	-	Mkms_0325	-	IclR family transcriptional regulator
324	 70.70	0	361015..362478	-	487	119866381	-	Mkms_0326	-	hypothetical protein
325	 68.10	0	362475..363383	-	302	119866382	-	Mkms_0327	-	glyoxalase/bleomycin resistance protein/dioxygenase
326	 67.68	0	363399..364580	-	393	119866383	-	Mkms_0328	-	acyl-CoA dehydrogenase type 2
327	 70.22	0	364668..365708	-	346	119866384	-	Mkms_0329	-	ferredoxin
328	 65.25	-1	365799..367421	+	540	119866385	-	Mkms_0330	-	FAD dependent oxidoreductase
329	 69.91	0	367421..368221	+	266	119866386	-	Mkms_0331	-	short-chain dehydrogenase/reductase SDR
330	 68.81	0	368218..369057	+	279	119866387	-	Mkms_0332	-	short-chain dehydrogenase/reductase SDR
331	 67.37	0	369063..369920	-	285	119866388	-	Mkms_0333	-	alpha/beta hydrolase fold
332	 69.64	0	369955..370560	-	201	119866389	-	Mkms_0334	-	TetR family transcriptional regulator
333	 67.98	0	370611..371984	+	457	119866390	-	Mkms_0335	-	major facilitator transporter
334	 70.60	0	371981..372820	-	279	119866391	-	Mkms_0336	-	NAD-dependent epimerase/dehydratase
335	 73.81	+1	372918..373295	+	125	119866392	-	Mkms_0337	-	hypothetical protein
336	 70.57	0	373288..374184	+	298	119866393	-	Mkms_0338	-	UspA domain-containing protein
337	 65.36	0	374245..375165	-	306	119866394	-	Mkms_0339	-	luciferase family protein
338	 66.90	0	375194..376033	-	279	119866395	-	Mkms_0340	-	short-chain dehydrogenase/reductase SDR
339	 67.18	0	376113..376700	-	195	119866396	-	Mkms_0341	-	TetR family transcriptional regulator
340	 67.45	0	376813..378090	+	425	119866397	-	Mkms_0342	-	cytochrome P450
341	 65.93	0	378087..378896	-	269	119866398	-	Mkms_0343	-	carboxymuconolactone decarboxylase
342	 68.15	0	378880..379689	-	269	119866399	-	Mkms_0344	-	short-chain dehydrogenase/reductase SDR
343	 65.22	-1	379686..380516	-	276	119866400	-	Mkms_0345	-	short chain dehydrogenase
344	 65.19	-1	380604..381212	+	202	119866401	-	Mkms_0346	-	TetR family transcriptional regulator
345	 65.80	0	381177..381866	-	229	119866402	-	Mkms_0347	-	protein of unknown function DUF899, thioredoxin family protein
346	 68.22	0	381915..383393	+	492	119866403	-	Mkms_0348	-	hypothetical protein
347	 70.57	0	383430..384095	-	221	119866404	-	Mkms_0349	-	GntR family transcriptional regulator
348	 69.39	0	384142..385353	+	403	119866405	-	Mkms_0350	-	major facilitator transporter
349	 73.48	+1	385355..385750	-	131	119866406	-	Mkms_0351	-	putative alanine and proline rich membrane protein
350	 72.03	+1	385788..386477	+	229	119866407	-	Mkms_0352	-	peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
351	 68.05	0	386537..387187	+	216	119866408	-	Mkms_0353	-	FadD16
352	 68.38	0	387184..388464	-	426	119866409	-	Mkms_0354	-	hypothetical protein
353	 57.30	-2	388464..388730	-	88	119866410	-	Mkms_0355	-	hypothetical protein
354	 67.55	0	388823..391093	-	756	119866411	-	Mkms_0356	-	trehalose synthase
355	 70.22	0	391273..392652	-	459	119866412	-	Mkms_0357	-	hypothetical protein
356	 68.27	0	392739..394232	-	497	119866413	-	Mkms_0358	-	methylmalonate-semialdehyde dehydrogenase
357	 74.09	+1	394313..395941	+	542	119866414	-	Mkms_0359	-	Fis family transcriptional regulator
358	 70.57	0	396121..400293	+	1390	119866415	-	Mkms_0360	-	PAS/PAC sensor hybrid histidine kinase
359	 70.57	0	400293..400625	+	110	119866416	-	Mkms_0361	-	anti-sigma-factor antagonist
360	 68.04	0	400636..401799	+	387	119866417	-	Mkms_0362	-	ribonuclease BN
361	 67.73	0	401590..403005	-	471	119866418	-	Mkms_0363	-	xanthine/uracil/vitamin C permease
362	 71.80	+1	403080..403994	+	304	119866419	-	Mkms_0364	-	chromosome replication initiation inhibitor protein
363	 71.37	0	403999..405210	-	403	119866420	-	Mkms_0365	-	sulfide-quinone reductase
364	 69.98	0	405328..406413	+	361	119866421	-	Mkms_0366	-	diguanylate cyclase
365	 69.71	0	406427..407116	+	229	119866422	-	Mkms_0367	-	TenA family transcription regulator
366	 70.05	0	407119..407769	+	216	119866423	-	Mkms_0368	-	hypothetical protein
367	 64.25	-1	407870..408325	-	151	119866424	-	Mkms_0369	-	anti-sigma-factor antagonist
368	 70.42	0	408478..409782	-	434	119866425	-	Mkms_0370	-	hypothetical protein
369	 66.15	0	409840..411573	+	577	119866426	-	Mkms_0371	-	acyl-CoA synthetase
370	 65.37	0	411577..411885	-	102	119866427	-	Mkms_0372	-	hypothetical protein
371	 74.61	+1	411946..412851	+	301	119866428	-	Mkms_0373	-	ADP-ribosylation/crystallin J1
372	 68.76	0	412811..414097	-	428	119866429	-	Mkms_0374	-	major facilitator transporter
373	 67.01	0	414184..414477	-	97	119866430	-	Mkms_0375	-	hypothetical protein
374	 68.95	0	414579..416771	-	730	119866431	-	Mkms_0376	-	acyl-CoA dehydrogenase domain-containing protein
375	 69.42	0	416831..417448	-	205	119866432	-	Mkms_0377	-	TetR family transcriptional regulator
376	 68.86	0	417523..418434	+	303	119866433	-	Mkms_0378	-	hypothetical protein
377	 70.76	0	418451..419353	+	300	119866434	-	Mkms_0379	-	putative methyltransferase
378	 69.86	0	419549..421333	+	594	119866435	-	Mkms_0380	-	ATPase central domain-containing protein
379	 71.57	0	421330..422880	+	516	119866436	-	Mkms_0381	-	hypothetical protein
380	 69.06	0	422877..426842	+	1321	119866437	-	Mkms_0382	-	cell divisionFtsK/SpoIIIE
381	 74.76	+1	426842..427150	+	102	119866438	-	Mkms_0383	-	PE domain-containing protein
382	 73.26	+1	427151..428728	+	525	119866439	-	Mkms_0384	-	PPE protein
383	 69.73	0	428778..429071	+	97	119866440	-	Mkms_0385	-	hypothetical protein
384	 67.36	0	429101..429388	+	95	119866441	-	Mkms_0386	-	hypothetical protein
385	 71.53	0	429425..430369	+	314	119866442	-	Mkms_0387	-	putative DNA-binding protein
386	 73.55	+1	430332..431726	+	464	119866443	-	Mkms_0388	-	hypothetical protein
387	 73.59	+1	431723..433108	+	461	119866444	-	Mkms_0389	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
388	 72.33	+1	433105..434058	+	317	119866445	-	Mkms_0390	-	putative transmembrane protein
389	 70.40	0	434044..435033	-	329	119866446	-	Mkms_0391	-	malate dehydrogenase (NAD)
390	 69.32	0	435136..436983	+	615	119866447	-	Mkms_0392	-	pyruvate kinase
391	 66.67	0	436990..437397	-	135	119866448	-	Mkms_0393	-	hypothetical protein
392	 69.09	0	437453..438649	-	398	119866449	-	Mkms_0394	-	hypothetical protein
393	 71.24	0	438776..439540	+	254	119866450	-	Mkms_0395	-	trans-aconitate 2-methyltransferase
394	 69.03	0	439537..441396	-	619	119866451	-	Mkms_0396	-	sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase
395	 68.62	0	441396..442316	-	306	119866452	-	Mkms_0397	-	sulfate adenylyltransferase subunit 2
396	 68.91	0	442313..443116	-	267	119866453	-	Mkms_0398	-	hypothetical protein
397	 66.38	0	443183..444580	-	465	119866454	-	Mkms_0399	-	sulfatase
398	 67.38	0	444670..445092	+	140	119866455	-	Mkms_0400	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
399	 69.36	0	445117..445599	-	160	119866456	-	Mkms_0401	-	hypothetical protein
400	 69.09	0	445647..446306	+	219	119866457	-	Mkms_0402	-	phosphoesterase, PA-phosphatase related
401	 70.89	0	446260..447750	-	496	119866458	-	Mkms_0403	-	phosphoesterase, PA-phosphatase related
402	 71.55	0	447813..448406	+	197	119866459	-	Mkms_0404	-	hypothetical protein
403	 70.48	0	448445..449230	+	261	119866460	-	Mkms_0405	-	activator of Hsp90 ATPase 1 family protein
404	 68.81	0	449266..449919	+	217	119866461	-	Mkms_0406	-	hypothetical protein
405	 63.83	-1	449924..450382	-	152	119866462	-	Mkms_0407	-	hypothetical protein
406	 68.21	0	450489..451202	+	237	119866463	-	Mkms_0408	-	hypothetical protein
407	 69.37	0	451197..452711	-	504	119866464	-	Mkms_0409	-	FAD dependent oxidoreductase
408	 72.66	+1	452794..454578	+	594	119866465	-	Mkms_0410	-	hypothetical protein
409	 65.04	-1	454809..455915	+	368	119866466	-	Mkms_0411	-	fatty acid desaturase
410	 69.63	0	455951..456826	+	291	119866467	-	Mkms_0412	-	alpha/beta hydrolase fold
411	 70.05	0	456916..457773	+	285	119866468	-	Mkms_0413	-	endoglucanase family protein
412	 69.89	0	457770..459011	+	413	119866469	-	Mkms_0414	-	putative GAF sensor protein
413	 66.67	0	459008..460984	+	658	119866470	-	Mkms_0415	-	cellulose synthase (UDP-forming)
414	 65.20	-1	460984..461325	+	113	119866471	-	Mkms_0416	-	anti-sigma-factor antagonist
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.