IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
274	 69.00	0	313516..314457	-	313	119866331	-	Mkms_0276	-	alpha/beta hydrolase fold
275	 70.08	0	314465..315343	-	292	119866332	-	Mkms_0277	-	urea amidolyase related protein
276	 71.62	0	315382..316047	-	221	119866333	-	Mkms_0278	-	allophanate hydrolase subunit 1
277	 68.58	0	316122..316802	-	226	119866334	-	Mkms_0279	-	hypothetical protein
278	 70.70	0	316815..317780	-	321	119866335	-	Mkms_0280	-	periplasmic binding protein
279	 66.04	0	317826..318623	-	265	119866336	-	Mkms_0281	-	short chain dehydrogenase
280	 71.33	0	318935..319534	-	199	119866337	-	Mkms_0282	-	lysine exporter protein LysE/YggA
281	 67.70	0	319799..320569	+	256	119866338	-	Mkms_0283	-	hypothetical protein
282	 66.20	0	320573..321430	+	285	119866339	-	Mkms_0284	-	hypothetical protein
283	 67.42	0	321444..322631	+	395	119866340	-	Mkms_0285	-	virulence factor Mce family protein
284	 66.37	0	322628..323653	+	341	119866341	-	Mkms_0286	-	virulence factor Mce family protein
285	 65.93	0	323653..324735	+	360	119866342	-	Mkms_0287	-	virulence factor Mce family protein
286	 68.96	0	324732..326168	+	478	119866343	-	Mkms_0288	-	virulence factor Mce family protein
287	 68.42	0	326165..327364	+	399	119866344	-	Mkms_0289	-	virulence factor Mce family protein
288	 68.49	0	327364..328902	+	512	119866345	-	Mkms_0290	-	virulence factor Mce family protein
289	 67.68	0	328907..329401	-	164	119866346	-	Mkms_0291	-	hypothetical protein
290	 69.55	0	329541..329921	+	126	119866347	-	Mkms_0292	-	hypothetical protein
291	 67.41	0	329918..330322	+	134	119866348	-	Mkms_0293	-	hypothetical protein
292	 66.03	0	330326..330955	+	209	119866349	-	Mkms_0294	-	hypothetical protein
293	 68.10	0	330970..331458	+	162	119866350	-	Mkms_0295	-	hypothetical protein
294	 70.62	0	331455..332036	-	193	119866351	-	Mkms_0296	-	thioesterase superfamily protein
295	 70.36	0	332033..333577	-	514	119866352	-	Mkms_0297	-	3-ketosteroid-delta-1-dehydrogenase
296	 65.06	-1	333598..334344	+	248	119866353	-	Mkms_0298	-	PadR family transcriptional regulator
297	 67.32	0	334414..335640	+	408	119866354	-	Mkms_0299	-	NADH:flavin oxidoreductase/NADH oxidase
298	 68.56	0	335649..336071	+	140	119866355	-	Mkms_0300	-	hypothetical protein
299	 72.65	+1	336082..336933	+	283	119866356	-	Mkms_0301	-	luciferase family protein
300	 68.42	0	336944..337741	-	265	119866357	-	Mkms_0302	-	short-chain dehydrogenase/reductase SDR
301	 69.95	0	337761..339467	-	568	119866358	-	Mkms_0303	-	3-ketosteroid-delta-1-dehydrogenase
302	 67.67	0	339568..340362	+	264	119866359	-	Mkms_0304	-	short-chain dehydrogenase/reductase SDR
303	 72.02	+1	340359..340862	+	167	119866360	-	Mkms_0305	-	hypothetical protein
304	 64.73	-1	340914..342050	+	378	119866361	-	Mkms_0306	-	Rieske (2Fe-2S) domain-containing protein
305	 71.82	+1	342047..342337	+	96	119866362	-	Mkms_0307	-	hypothetical protein
306	 69.99	0	342347..343159	+	270	119866363	-	Mkms_0308	-	short-chain dehydrogenase/reductase SDR
307	 70.72	0	343228..344361	+	377	119866364	-	Mkms_0309	-	hypothetical protein
308	 64.25	-1	344376..345452	-	358	119866365	-	Mkms_0310	-	hypothetical protein
309	 70.98	0	345544..346494	-	316	119866366	-	Mkms_0311	-	alpha/beta hydrolase domain-containing protein
310	 68.72	0	346491..348095	-	534	119866367	-	Mkms_0312	-	hypothetical protein
311	 68.19	0	348107..348895	-	262	119866368	-	Mkms_0313	-	short-chain dehydrogenase/reductase SDR
312	 70.27	0	348907..349767	-	286	119866369	-	Mkms_0314	-	short-chain dehydrogenase/reductase SDR
313	 66.87	0	349772..350254	-	160	119866370	-	Mkms_0315	-	hypothetical protein
314	 68.70	0	350317..351102	-	261	119866371	-	Mkms_0316	-	enoyl-CoA hydratase
315	 70.40	0	351099..352517	-	472	119866372	-	Mkms_0317	-	betaine-aldehyde dehydrogenase
316	 68.02	0	352532..353638	-	368	119866373	-	Mkms_0318	-	alcohol dehydrogenase
317	 68.09	0	353651..355264	-	537	119866374	-	Mkms_0319	-	acyl-CoA synthetase
318	 68.21	0	355332..357215	+	627	119866375	-	Mkms_0320	-	hypothetical protein
319	 69.14	0	357212..358099	+	295	119866376	-	Mkms_0321	-	short-chain dehydrogenase/reductase SDR
320	 66.83	0	358105..358725	-	206	119866377	-	Mkms_0322	-	stress responsive alpha-beta barrel domain-containing protein
321	 68.71	0	358718..359059	-	113	119866378	-	Mkms_0323	-	hypothetical protein
322	 70.31	0	359052..359984	-	310	119866379	-	Mkms_0324	-	alpha/beta hydrolase domain-containing protein
323	 72.59	+1	359981..360841	-	286	119866380	-	Mkms_0325	-	IclR family transcriptional regulator
324	 70.70	0	361015..362478	-	487	119866381	-	Mkms_0326	-	hypothetical protein
325	 68.10	0	362475..363383	-	302	119866382	-	Mkms_0327	-	glyoxalase/bleomycin resistance protein/dioxygenase
326	 67.68	0	363399..364580	-	393	119866383	-	Mkms_0328	-	acyl-CoA dehydrogenase type 2
327	 70.22	0	364668..365708	-	346	119866384	-	Mkms_0329	-	ferredoxin
328	 65.25	-1	365799..367421	+	540	119866385	-	Mkms_0330	-	FAD dependent oxidoreductase
329	 69.91	0	367421..368221	+	266	119866386	-	Mkms_0331	-	short-chain dehydrogenase/reductase SDR
330	 68.81	0	368218..369057	+	279	119866387	-	Mkms_0332	-	short-chain dehydrogenase/reductase SDR
331	 67.37	0	369063..369920	-	285	119866388	-	Mkms_0333	-	alpha/beta hydrolase fold
332	 69.64	0	369955..370560	-	201	119866389	-	Mkms_0334	-	TetR family transcriptional regulator
333	 67.98	0	370611..371984	+	457	119866390	-	Mkms_0335	-	major facilitator transporter
334	 70.60	0	371981..372820	-	279	119866391	-	Mkms_0336	-	NAD-dependent epimerase/dehydratase
335	 73.81	+1	372918..373295	+	125	119866392	-	Mkms_0337	-	hypothetical protein
336	 70.57	0	373288..374184	+	298	119866393	-	Mkms_0338	-	UspA domain-containing protein
337	 65.36	0	374245..375165	-	306	119866394	-	Mkms_0339	-	luciferase family protein
338	 66.90	0	375194..376033	-	279	119866395	-	Mkms_0340	-	short-chain dehydrogenase/reductase SDR
339	 67.18	0	376113..376700	-	195	119866396	-	Mkms_0341	-	TetR family transcriptional regulator
340	 67.45	0	376813..378090	+	425	119866397	-	Mkms_0342	-	cytochrome P450
341	 65.93	0	378087..378896	-	269	119866398	-	Mkms_0343	-	carboxymuconolactone decarboxylase
342	 68.15	0	378880..379689	-	269	119866399	-	Mkms_0344	-	short-chain dehydrogenase/reductase SDR
343	 65.22	-1	379686..380516	-	276	119866400	-	Mkms_0345	-	short chain dehydrogenase
344	 65.19	-1	380604..381212	+	202	119866401	-	Mkms_0346	-	TetR family transcriptional regulator
345	 65.80	0	381177..381866	-	229	119866402	-	Mkms_0347	-	protein of unknown function DUF899, thioredoxin family protein
346	 68.22	0	381915..383393	+	492	119866403	-	Mkms_0348	-	hypothetical protein
347	 70.57	0	383430..384095	-	221	119866404	-	Mkms_0349	-	GntR family transcriptional regulator
348	 69.39	0	384142..385353	+	403	119866405	-	Mkms_0350	-	major facilitator transporter
349	 73.48	+1	385355..385750	-	131	119866406	-	Mkms_0351	-	putative alanine and proline rich membrane protein
350	 72.03	+1	385788..386477	+	229	119866407	-	Mkms_0352	-	peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
351	 68.05	0	386537..387187	+	216	119866408	-	Mkms_0353	-	FadD16
352	 68.38	0	387184..388464	-	426	119866409	-	Mkms_0354	-	hypothetical protein
353	 57.30	-2	388464..388730	-	88	119866410	-	Mkms_0355	-	hypothetical protein
354	 67.55	0	388823..391093	-	756	119866411	-	Mkms_0356	-	trehalose synthase
355	 70.22	0	391273..392652	-	459	119866412	-	Mkms_0357	-	hypothetical protein
356	 68.27	0	392739..394232	-	497	119866413	-	Mkms_0358	-	methylmalonate-semialdehyde dehydrogenase
357	 74.09	+1	394313..395941	+	542	119866414	-	Mkms_0359	-	Fis family transcriptional regulator
358	 70.57	0	396121..400293	+	1390	119866415	-	Mkms_0360	-	PAS/PAC sensor hybrid histidine kinase
359	 70.57	0	400293..400625	+	110	119866416	-	Mkms_0361	-	anti-sigma-factor antagonist
360	 68.04	0	400636..401799	+	387	119866417	-	Mkms_0362	-	ribonuclease BN
361	 67.73	0	401590..403005	-	471	119866418	-	Mkms_0363	-	xanthine/uracil/vitamin C permease
362	 71.80	+1	403080..403994	+	304	119866419	-	Mkms_0364	-	chromosome replication initiation inhibitor protein
363	 71.37	0	403999..405210	-	403	119866420	-	Mkms_0365	-	sulfide-quinone reductase
364	 69.98	0	405328..406413	+	361	119866421	-	Mkms_0366	-	diguanylate cyclase
365	 69.71	0	406427..407116	+	229	119866422	-	Mkms_0367	-	TenA family transcription regulator
366	 70.05	0	407119..407769	+	216	119866423	-	Mkms_0368	-	hypothetical protein
367	 64.25	-1	407870..408325	-	151	119866424	-	Mkms_0369	-	anti-sigma-factor antagonist
368	 70.42	0	408478..409782	-	434	119866425	-	Mkms_0370	-	hypothetical protein
369	 66.15	0	409840..411573	+	577	119866426	-	Mkms_0371	-	acyl-CoA synthetase
370	 65.37	0	411577..411885	-	102	119866427	-	Mkms_0372	-	hypothetical protein
371	 74.61	+1	411946..412851	+	301	119866428	-	Mkms_0373	-	ADP-ribosylation/crystallin J1
372	 68.76	0	412811..414097	-	428	119866429	-	Mkms_0374	-	major facilitator transporter
373	 67.01	0	414184..414477	-	97	119866430	-	Mkms_0375	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.