IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3148	 65.31	-1	3321927..3323249	-	440	119869205	-	Mkms_3173	-	UDP-glucose 6-dehydrogenase
3149	 65.76	0	3323342..3326530	-	1062	119869206	-	Mkms_3174	-	transport protein
3150	 68.64	0	3326701..3327966	+	421	119869207	-	Mkms_3175	-	glycosyl transferase family protein
3151	 70.20	0	3327948..3329333	-	461	119869208	-	Mkms_3176	-	hypothetical protein
3152	 68.79	0	3329345..3330757	-	470	119869209	-	Mkms_3177	-	hypothetical protein
3153	 66.73	0	3330757..3332223	-	488	119869210	-	Mkms_3178	-	condensation domain-containing protein
3154	 70.93	0	3332285..3338542	-	2085	119869211	-	Mkms_3179	-	acyl transferase domain-containing protein
3155	 57.73	-2	3339026..3339316	+	96	119869212	-	Mkms_3180	-	hypothetical protein
3156	 70.22	0	3339333..3340628	-	431	119869213	-	Mkms_3181	-	beta-lactamase
3157	 70.25	0	3340676..3341653	-	325	119869214	-	Mkms_3182	-	arginine/ornithine transport system ATPase
3158	 68.94	0	3341655..3343937	-	760	119869215	-	Mkms_3183	-	methylmalonyl-CoA mutase
3159	 72.19	+1	3343943..3345790	-	615	119869216	-	Mkms_3184	-	methylmalonyl-CoA mutase, beta subunit
3160	 70.96	0	3345881..3346648	+	255	119869217	-	Mkms_3185	-	hypothetical protein
3161	 69.42	0	3346635..3346997	-	120	119869218	-	Mkms_3186	-	hypothetical protein
3162	 69.55	0	3346994..3348172	-	392	119869219	-	Mkms_3187	-	SPFH domain-containing protein/band 7 family protein
3163	 68.05	0	3348191..3348625	-	144	119869220	-	Mkms_3188	-	hypothetical protein
3164	 72.26	+1	3348685..3349542	+	285	119869221	-	Mkms_3189	-	hypothetical protein
3165	 67.60	0	3349549..3350301	-	250	119869222	-	Mkms_3190	-	20S proteasome, A and B subunits
3166	 67.98	0	3350298..3351212	-	304	119869223	-	Mkms_3191	-	proteasome subunit beta
3167	 68.21	0	3351209..3351403	-	64	119869224	-	Mkms_3192	-	hypothetical protein
3168	 69.50	0	3351514..3353067	-	517	119869225	-	Mkms_3193	-	hypothetical protein
3169	 66.23	0	3353128..3354975	-	615	119869226	-	Mkms_3194	-	vesicle-fusing ATPase
3170	 72.10	+1	3355188..3355610	+	140	119869227	-	Mkms_3195	-	low molecular weight antigen CFP2 (low molecular weight protein antigen 2) (CFP-2)
3171	 74.05	+1	3355637..3356164	+	175	119869228	-	Mkms_3196	-	LppK
3172	 71.72	0	3356168..3356464	+	98	119869229	-	Mkms_3197	-	hypothetical protein
3173	 69.94	0	3356461..3357315	-	284	119869230	-	Mkms_3198	-	tRNA (adenine-N(1)-)-methyltransferase
3174	 72.18	+1	3357401..3358234	+	277	119869231	-	Mkms_3199	-	RecB family exonuclease
3175	 70.76	0	3358231..3359037	+	268	119869232	-	Mkms_3200	-	hypothetical protein
3176	 69.77	0	3359034..3359549	+	171	119869233	-	Mkms_3201	-	hypothetical protein
3177	 70.78	0	3359482..3360234	-	250	119869234	-	Mkms_3202	-	TetR family transcriptional regulator
3178	 68.00	0	3360305..3360679	+	124	119869235	-	Mkms_3203	-	glyoxalase/bleomycin resistance protein/dioxygenase
3179	 66.96	0	3360692..3362071	-	459	119869236	-	Mkms_3204	-	mercuric reductase
3180	 69.77	0	3362073..3362555	-	160	119869237	-	Mkms_3205	-	putative integral membrane protein
3181	 68.03	0	3362785..3363225	+	146	119869238	-	Mkms_3206	-	hypothetical protein
3182	 69.84	0	3363233..3364084	-	283	119869239	hisG	Mkms_3207	-	ATP phosphoribosyltransferase
3183	 67.73	0	3364090..3364371	-	93	119869240	hisE	Mkms_3208	-	phosphoribosyl-ATP pyrophosphatase
3184	 67.41	0	3364404..3365882	-	492	119869241	-	Mkms_3209	-	sugar transporter
3185	 69.00	0	3366004..3366690	-	228	119869242	-	Mkms_3210	-	HAD family hydrolase
3186	 66.96	0	3366777..3370571	-	1264	119869243	metH	Mkms_3211	-	B12-dependent methionine synthase
3187	 69.92	0	3370961..3371851	+	296	119869244	-	Mkms_3212	-	hypothetical protein
3188	 67.15	0	3371841..3373280	-	479	119869245	-	Mkms_3213	-	hypothetical protein
3189	 67.91	0	3373277..3374161	-	294	119869246	-	Mkms_3214	-	short chain dehydrogenase
3190	 70.35	0	3374163..3375410	-	415	119869247	-	Mkms_3215	-	cysteinyl-tRNA synthetase
3191	 73.65	+1	3375503..3376261	-	252	119869248	-	Mkms_3216	-	inositol monophosphatase
3192	 70.24	0	3376261..3377043	-	260	119869249	-	Mkms_3217	-	phosphatidylinositol 3- and 4-kinase, catalytic
3193	 70.24	0	3377081..3377668	-	195	119869250	-	Mkms_3218	-	hypothetical protein
3194	 71.41	0	3377697..3378413	-	238	119869251	-	Mkms_3219	-	phosphoglycerate mutase
3195	 68.71	0	3378410..3379240	-	276	119869252	-	Mkms_3220	-	undecaprenyl pyrophosphate phosphatase
3196	 70.83	0	3379286..3379597	-	103	119869253	-	Mkms_3221	-	hypothetical protein
3197	 72.38	+1	3379731..3380762	+	343	119869254	-	Mkms_3222	-	putative lipoprotein
3198	 73.02	+1	3380762..3381013	+	83	119869255	-	Mkms_3223	-	hypothetical protein
3199	 71.90	+1	3381010..3382080	+	356	119869256	-	Mkms_3224	-	dihydroorotate dehydrogenase 2
3200	 67.41	0	3382163..3382699	-	178	119869257	-	Mkms_3225	-	PBP family phospholipid-binding protein
3201	 68.99	0	3382727..3384061	-	444	119869258	-	Mkms_3226	-	hypothetical protein
3202	 64.18	-1	3384205..3385851	-	548	119869259	-	Mkms_3227	-	recombinase
3203	 62.40	-1	3386041..3387540	-	499	119869260	-	Mkms_3228	-	putative plasmid replication initiator protein
3204	 65.35	0	3387545..3388990	-	481	119869261	-	Mkms_3229	-	cell divisionFtsK/SpoIIIE
3205	 62.90	-1	3389083..3389427	-	114	119869262	-	Mkms_3230	-	regulatory protein
3206	 65.17	-1	3389681..3390481	+	266	119869263	-	Mkms_3231	-	helix-turn-helix domain-containing protein
3207	 63.68	-1	3390488..3390955	+	155	119869264	-	Mkms_3232	-	NUDIX hydrolase
3208	 66.67	0	3390964..3391500	-	178	119869265	-	Mkms_3233	-	metal dependent phosphohydrolase
3209	 58.44	-2	3391850..3392092	-	80	119869266	-	Mkms_3234	-	hypothetical protein
3210	 63.68	-1	3392089..3393864	-	591	119869267	-	Mkms_3235	-	UBA/THIF-type NAD/FAD binding protein
3211	 59.47	-2	3393861..3394874	-	337	119869268	-	Mkms_3236	-	hypothetical protein
3212	 64.78	-1	3394861..3395976	-	371	119869269	-	Mkms_3237	-	patatin
3213	 65.05	-1	3396154..3396897	-	247	119869270	-	Mkms_3238	-	hypothetical protein
3214	 64.78	-1	3396894..3397475	-	193	119869271	-	Mkms_3239	-	hypothetical protein
3215	 65.33	-1	3398420..3399241	-	273	119869272	-	Mkms_3240	-	integrase catalytic subunit
3216	 61.49	-2	3399274..3399582	-	102	119869273	-	Mkms_3241	-	transposase IS3/IS911 family protein
3217	 60.32	-2	3399654..3400094	+	146	119869274	-	Mkms_3242	-	putative transposase
3218	 61.00	-2	3400135..3401334	-	399	119869275	-	Mkms_3243	-	acyl-CoA dehydrogenase domain-containing protein
3219	 61.52	-2	3401495..3402601	-	368	119869276	-	Mkms_3244	-	alcohol dehydrogenase
3220	 55.72	-2	3402750..3403160	-	136	119869277	-	Mkms_3245	-	hypothetical protein
3221	 61.85	-2	3403252..3404310	-	352	119869278	-	Mkms_3246	-	hypothetical protein
3222	 59.69	-2	3404360..3405505	-	381	119869279	-	Mkms_3247	-	acyl-CoA dehydrogenase domain-containing protein
3223	 60.48	-2	3405544..3407175	-	543	119869280	-	Mkms_3248	-	acyl-CoA synthetase
3224	 62.54	-1	3407190..3407843	-	217	119869281	-	Mkms_3249	-	hypothetical protein
3225	 60.97	-2	3407840..3409297	-	485	119869282	-	Mkms_3250	-	cytochrome P450
3226	 59.92	-2	3409413..3410597	-	394	119869283	-	Mkms_3251	-	cyclohexanone monooxygenase
3227	 67.27	0	3410644..3410976	+	110	119869284	-	Mkms_3252	-	transposase IS3/IS911 family protein
3228	 65.44	0	3410973..3411872	+	299	119869285	-	Mkms_3253	-	integrase catalytic subunit
3229	 60.56	-2	3411891..3412283	-	130	119869286	-	Mkms_3254	-	flavoprotein involved in K+ transport-like protein
3230	 62.70	-1	3412360..3413316	-	318	119869287	-	Mkms_3255	-	alpha/beta hydrolase domain-containing protein
3231	 55.93	-2	3413322..3414839	-	505	119869288	-	Mkms_3256	-	putative monooxygenase
3232	 57.56	-2	3414884..3416377	-	497	119869289	-	Mkms_3257	-	putative monooxygenase
3233	 57.36	-2	3416374..3417297	-	307	119869290	-	Mkms_3258	-	hypothetical protein
3234	 61.17	-2	3417311..3418165	-	284	119869291	-	Mkms_3259	-	short-chain dehydrogenase/reductase SDR
3235	 62.60	-1	3418189..3418926	+	245	119869292	-	Mkms_3260	-	TetR family transcriptional regulator
3236	 57.93	-2	3419108..3419977	-	289	119869293	-	Mkms_3261	-	metal-dependent hydrolase
3237	 59.41	-2	3420047..3420721	+	224	119869294	-	Mkms_3262	-	TetR family transcriptional regulator
3238	 65.92	0	3421065..3422666	+	533	119869295	-	Mkms_3263	-	carboxyl transferase
3239	 69.71	0	3422672..3424705	+	677	119869296	-	Mkms_3264	-	carbamoyl-phosphate synthase L chain, ATP-binding
3240	 65.11	-1	3424760..3425914	+	384	119869297	-	Mkms_3265	-	acyl-CoA dehydrogenase domain-containing protein
3241	 68.21	0	3425941..3427494	+	517	119869298	-	Mkms_3266	-	O-succinylbenzoate-CoA ligase
3242	 70.71	0	3427714..3428307	+	197	119869299	-	Mkms_3267	-	TetR family transcriptional regulator
3243	 69.80	0	3428304..3430028	-	574	119869300	-	Mkms_3268	-	hypothetical protein
3244	 71.46	0	3430025..3430837	-	270	119869301	-	Mkms_3269	-	wyosine base formation
3245	 68.23	0	3430839..3431606	-	255	119869302	-	Mkms_3270	-	enoyl-CoA hydratase/isomerase
3246	 64.97	-1	3431650..3432120	-	156	119869303	-	Mkms_3271	-	dehydratase
3247	 65.91	0	3432117..3432644	-	175	119869304	-	Mkms_3272	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.