IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3051	 66.67	0	3218985..3219572	+	195	119869108	-	Mkms_3076	-	hypothetical protein
3052	 66.67	0	3219569..3220024	+	151	119869109	-	Mkms_3077	-	hypothetical protein
3053	 66.55	0	3220271..3221119	+	282	119869110	-	Mkms_3078	-	phage major capsid protein, HK97
3054	 66.98	0	3221119..3221439	+	106	119869111	-	Mkms_3079	-	hypothetical protein
3055	 61.63	-2	3221753..3222169	-	138	119869112	-	Mkms_3080	-	secreted metal-binding protein
3056	 62.56	-1	3222295..3222513	-	72	119869113	-	Mkms_3081	-	hypothetical protein
3057	 67.09	0	3222611..3223081	+	156	119869114	-	Mkms_3082	-	hypothetical protein
3058	 67.94	0	3223150..3224091	-	313	119869115	-	Mkms_3083	-	agmatinase
3059	 66.89	0	3224150..3225469	+	439	119869116	-	Mkms_3084	-	adenylate cyclase
3060	 71.88	+1	3225435..3227027	-	530	119869117	-	Mkms_3085	-	FAD dependent oxidoreductase
3061	 66.89	0	3227014..3227460	-	148	119869118	-	Mkms_3086	-	hypothetical protein
3062	 65.64	0	3227489..3227977	-	162	119869119	-	Mkms_3087	-	Ferritin, Dps family protein
3063	 74.08	+1	3228033..3229826	-	597	119869120	-	Mkms_3088	-	hypothetical protein
3064	 71.23	0	3229884..3230540	-	218	119869121	-	Mkms_3089	-	two component LuxR family transcriptional regulator
3065	 71.99	+1	3230533..3231678	-	381	119869122	-	Mkms_3090	-	putative signal transduction histidine kinase
3066	 64.44	-1	3231679..3232443	-	254	119869123	-	Mkms_3091	-	ABC transporter related
3067	 64.29	-1	3232440..3233363	-	307	119869124	-	Mkms_3092	-	polar amino acid ABC transporter, inner membrane subunit
3068	 65.28	-1	3233382..3234317	-	311	119869125	-	Mkms_3093	-	extracellular solute-binding protein
3069	 66.49	0	3234469..3235050	+	193	119869126	-	Mkms_3094	-	protein of unknown function DUF308, membrane
3070	 66.19	0	3235147..3236610	+	487	119869127	-	Mkms_3095	-	cytochrome bd ubiquinol oxidase, subunit I
3071	 66.67	0	3236626..3237669	+	347	119869128	-	Mkms_3096	-	cytochrome d ubiquinol oxidase, subunit II
3072	 71.94	+1	3237666..3239258	+	530	119869129	-	Mkms_3097	-	ABC transporter, transmembrane region, type 1
3073	 73.92	+1	3239245..3240774	+	509	119869130	-	Mkms_3098	-	ABC transporter, transmembrane region, type 1
3074	 69.82	0	3240786..3241388	+	200	119869131	-	Mkms_3099	-	hypothetical protein
3075	 68.63	0	3241385..3242248	-	287	119869132	-	Mkms_3100	-	acyl-CoA thioesterase
3076	 68.57	0	3242265..3243683	-	472	119869133	-	Mkms_3101	-	pyruvate kinase
3077	 70.25	0	3243711..3245219	-	502	119869134	-	Mkms_3102	-	glutamate synthase (NADH) small subunit
3078	 68.07	0	3245212..3249768	-	1518	119869135	-	Mkms_3103	-	glutamate synthase (NADH) large subunit
3079	 69.57	0	3249851..3250264	-	137	119869136	-	Mkms_3104	-	hypothetical protein
3080	 66.41	0	3250254..3250637	-	127	119869137	-	Mkms_3105	-	TM2 domain-containing protein
3081	 69.44	0	3250674..3252116	-	480	119869138	-	Mkms_3106	-	hypothetical protein
3082	 70.75	0	3252181..3255045	-	954	119869139	-	Mkms_3107	-	prolipoprotein diacylglyceryl transferase
3083	 69.96	0	3255042..3255830	-	262	119869140	trpA	Mkms_3108	-	tryptophan synthase subunit alpha
3084	 68.65	0	3255827..3257089	-	420	119869141	-	Mkms_3109	-	tryptophan synthase subunit beta
3085	 70.45	0	3257091..3257909	-	272	119869142	trpC	Mkms_3110	-	indole-3-glycerol-phosphate synthase
3086	 72.53	+1	3257994..3258590	-	198	119869143	-	Mkms_3111	-	hypothetical protein
3087	 69.81	0	3258587..3260146	-	519	119869144	-	Mkms_3112	-	anthranilate synthase component I
3088	 66.67	0	3260209..3260673	+	154	119869145	-	Mkms_3113	-	redoxin domain-containing protein
3089	 69.49	0	3260670..3261662	-	330	119869146	-	Mkms_3114	-	alpha/beta hydrolase domain-containing protein
3090	 68.68	0	3261673..3262020	-	115	119869147	hisI	Mkms_3115	-	phosphoribosyl-AMP cyclohydrolase
3091	 69.85	0	3262020..3262805	-	261	119869148	-	Mkms_3116	-	imidazole glycerol phosphate synthase subunit HisF
3092	 68.50	0	3262805..3263620	-	271	119869149	-	Mkms_3117	-	inositol monophosphatase
3093	 70.28	0	3263628..3264374	-	248	119869150	-	Mkms_3118	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
3094	 71.36	0	3264406..3265023	-	205	119869151	hisH	Mkms_3119	-	imidazole glycerol phosphate synthase subunit HisH
3095	 65.55	0	3265020..3265646	-	208	119869152	hisB	Mkms_3120	-	imidazoleglycerol-phosphate dehydratase
3096	 68.34	0	3265643..3266776	-	377	119869153	-	Mkms_3121	-	histidinol-phosphate aminotransferase
3097	 71.86	+1	3266773..3268197	-	474	119869154	hisD	Mkms_3122	-	histidinol dehydrogenase
3098	 66.15	0	3268242..3268625	+	127	119869155	-	Mkms_3123	-	hypothetical protein
3099	 71.43	0	3268583..3268876	-	97	119869156	-	Mkms_3124	-	helix-turn-helix domain-containing protein
3100	 70.56	0	3268956..3269726	+	256	119869157	-	Mkms_3125	-	methionine aminopeptidase, type I
3101	 71.05	0	3269739..3270605	-	288	119869158	-	Mkms_3126	-	nicotinate-nucleotide pyrophosphorylase
3102	 74.01	+1	3270596..3272242	-	548	119869159	-	Mkms_3127	-	L-aspartate oxidase
3103	 70.22	0	3272239..3273252	-	337	119869160	-	Mkms_3128	-	quinolinate synthetase
3104	 70.10	0	3273299..3273997	+	232	119869161	-	Mkms_3129	-	NUDIX hydrolase
3105	 69.40	0	3274040..3275392	+	450	119869162	-	Mkms_3130	-	triacylglycerol lipase
3106	 72.81	+1	3275328..3275978	-	216	119869163	-	Mkms_3131	-	putative transmembrane protein
3107	 68.66	0	3275975..3276175	-	66	119869164	-	Mkms_3132	-	hypothetical protein
3108	 68.07	0	3276175..3277170	-	331	119869165	-	Mkms_3133	-	biotin synthase
3109	 69.95	0	3277243..3277821	+	192	119869166	-	Mkms_3134	-	TetR family transcriptional regulator
3110	 72.61	+1	3277814..3278335	-	173	119869167	-	Mkms_3135	-	hypothetical protein
3111	 74.06	+1	3278336..3279025	-	229	119869168	bioD	Mkms_3136	-	dithiobiotin synthetase
3112	 75.28	+2	3279022..3280170	-	382	119869169	-	Mkms_3137	-	8-amino-7-oxononanoate synthase
3113	 70.25	0	3280209..3281519	-	436	119869170	-	Mkms_3138	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
3114	 68.76	0	3281599..3283749	+	716	119869171	-	Mkms_3139	-	acyltransferase 3
3115	 65.83	0	3283752..3285914	+	720	119869172	-	Mkms_3140	-	glycogen debranching enzyme GlgX
3116	 70.24	0	3285914..3288238	+	774	119869173	-	Mkms_3141	-	malto-oligosyltrehalose synthase
3117	 69.19	0	3288231..3289973	+	580	119869174	-	Mkms_3142	-	malto-oligosyltrehalose trehalohydrolase
3118	 68.93	0	3289961..3291241	-	426	119869175	-	Mkms_3143	-	threonine dehydratase
3119	 63.47	-1	3291284..3291721	-	145	119869176	-	Mkms_3144	-	hypothetical protein
3120	 72.29	+1	3291811..3292041	+	76	119869177	-	Mkms_3145	-	hypothetical protein
3121	 72.51	+1	3292038..3292448	-	136	119869178	-	Mkms_3146	-	hypothetical protein
3122	 66.02	0	3292459..3296034	-	1191	119869179	dnaE	Mkms_3147	-	DNA polymerase III subunit alpha
3123	 69.07	0	3296047..3296754	-	235	119869180	-	Mkms_3148	-	TetR family transcriptional regulator
3124	 71.83	+1	3296821..3297963	-	380	119869181	-	Mkms_3149	-	RNA polymerase ECF-subfamily sigma factor
3125	 69.55	0	3298013..3298393	-	126	119869182	-	Mkms_3150	-	DGPFAETKE family protein
3126	 68.16	0	3298423..3299361	-	312	119869183	-	Mkms_3151	-	transporter DMT superfamily protein
3127	 71.80	+1	3299358..3300272	-	304	119869184	-	Mkms_3152	-	ribosomal large subunit pseudouridine synthase D
3128	 71.57	0	3300287..3300979	-	230	119869185	lspA	Mkms_3153	-	lipoprotein signal peptidase
3129	 75.81	+2	3301019..3301948	+	309	119869186	-	Mkms_3154	-	asparaginase/glutaminase
3130	 72.04	+1	3301953..3303311	-	452	119869187	-	Mkms_3155	-	DNA polymerase IV
3131	 68.95	0	3303351..3303569	+	72	119869188	-	Mkms_3156	-	RNA-binding S4 domain-containing protein
3132	 72.70	+1	3303556..3304500	-	314	119869189	-	Mkms_3157	-	HxlR family transcriptional regulator
3133	 67.47	0	3304497..3305987	-	496	119869190	-	Mkms_3158	-	carotenoid oxygenase
3134	 71.21	0	3306040..3307272	+	410	119869191	-	Mkms_3159	-	acetyl-CoA acetyltransferase
3135	 67.21	0	3307276..3310410	-	1044	119869192	ileS	Mkms_3160	-	isoleucyl-tRNA synthetase
3136	 70.97	0	3310663..3311313	-	216	119869193	-	Mkms_3161	-	hypothetical protein
3137	 63.33	-1	3311450..3311809	+	119	119869194	-	Mkms_3162	-	hypothetical protein
3138	 65.03	-1	3311855..3312589	+	244	119869195	-	Mkms_3163	-	hypothetical protein
3139	 67.88	0	3312694..3314499	+	601	119869196	-	Mkms_3164	-	acyl-CoA synthetase
3140	 66.99	0	3314636..3315568	+	310	119869197	-	Mkms_3165	-	daunorubicin resistance ABC transporter ATPase subunit
3141	 65.85	0	3315565..3316302	+	245	119869198	-	Mkms_3166	-	ABC-2 type transporter
3142	 66.42	0	3316299..3317093	+	264	119869199	-	Mkms_3167	-	ABC-2 type transporter
3143	 62.37	-1	3317284..3317772	+	162	119869200	-	Mkms_3168	-	hypothetical protein
3144	 62.81	-1	3317769..3318962	+	397	119869201	-	Mkms_3169	-	hypothetical protein
3145	 66.24	0	3318999..3319931	-	310	119869202	-	Mkms_3170	-	glycosyl transferase family protein
3146	 65.21	-1	3319964..3320857	-	297	119869203	-	Mkms_3171	-	glycosyl transferase family protein
3147	 62.82	-1	3320869..3321831	-	320	119869204	-	Mkms_3172	-	polysaccharide pyruvyl transferase
3148	 65.31	-1	3321927..3323249	-	440	119869205	-	Mkms_3173	-	UDP-glucose 6-dehydrogenase
3149	 65.76	0	3323342..3326530	-	1062	119869206	-	Mkms_3174	-	transport protein
3150	 68.64	0	3326701..3327966	+	421	119869207	-	Mkms_3175	-	glycosyl transferase family protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.