IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2956	 64.11	-1	3112637..3113302	-	221	119869013	-	Mkms_2981	-	hypothetical protein
2957	 69.35	0	3113283..3115031	-	582	119869014	-	Mkms_2982	-	thiamine pyrophosphate binding domain-containing protein
2958	 65.92	0	3115241..3115507	+	88	119869015	-	Mkms_2983	-	hypothetical protein
2959	 70.44	0	3116147..3117499	+	450	119869016	-	Mkms_2984	-	cytochrome P450
2960	 67.20	0	3117477..3118601	-	374	119869017	-	Mkms_2985	-	hydroxyneurosporene-O-methyltransferase
2961	 72.00	+1	3118699..3119655	-	318	119869018	xerD	Mkms_2986	-	site-specific tyrosine recombinase XerD
2962	 69.37	0	3119655..3120284	-	209	119869019	-	Mkms_2987	-	NUDIX hydrolase
2963	 67.41	0	3120277..3122016	-	579	119869020	-	Mkms_2988	-	CTP synthetase
2964	 68.58	0	3122142..3123083	-	313	119869021	-	Mkms_2989	-	hypothetical protein
2965	 67.76	0	3123093..3124277	-	394	119869022	-	Mkms_2990	-	hypothetical protein
2966	 65.61	0	3124371..3124748	-	125	119869023	-	Mkms_2991	-	glyoxalase/bleomycin resistance protein/dioxygenase
2967	 70.49	0	3124821..3125396	+	191	119869024	-	Mkms_2992	-	TetR family transcriptional regulator
2968	 72.81	+1	3125400..3127172	-	590	119869025	-	Mkms_2993	-	DNA repair protein RecN
2969	 71.00	0	3127178..3128101	-	307	119869026	ppnK	Mkms_2994	-	inorganic polyphosphate/ATP-NAD kinase
2970	 70.86	0	3128098..3128907	-	269	119869027	-	Mkms_2995	-	hemolysin A
2971	 70.43	0	3128914..3129099	-	61	119869028	-	Mkms_2996	-	hypothetical protein
2972	 72.84	+1	3129101..3130105	-	334	119869029	-	Mkms_2997	-	HAD family hydrolase
2973	 72.78	+1	3130119..3130952	-	277	119869030	-	Mkms_2998	-	hypothetical protein
2974	 68.08	0	3136788..3138059	-	423	119869031	-	Mkms_2999	-	tyrosyl-tRNA synthetase
2975	 72.85	+1	3138087..3138701	-	204	119869032	-	Mkms_3000	-	3-methyladenine DNA glycosylase
2976	 68.77	0	3138759..3139520	+	253	119869033	-	Mkms_3001	-	ABC transporter related
2977	 66.96	0	3139592..3140272	+	226	119869034	-	Mkms_3002	-	multidrug ABC transporter inner membrane protein
2978	 68.13	0	3140279..3140893	+	204	119869035	-	Mkms_3003	-	TetR family transcriptional regulator
2979	 66.67	0	3140890..3141096	-	68	119869036	-	Mkms_3004	-	hypothetical protein
2980	 67.79	0	3141107..3141553	-	148	119869037	-	Mkms_3005	-	hypothetical protein
2981	 69.98	0	3141617..3144634	-	1005	119869038	-	Mkms_3006	-	acyl-CoA synthetase
2982	 69.33	0	3144693..3146495	+	600	119869039	-	Mkms_3007	-	ABC transporter related
2983	 71.28	0	3146502..3147389	-	295	119869040	-	Mkms_3008	-	alpha/beta hydrolase fold
2984	 71.27	0	3147386..3148798	-	470	119869041	-	Mkms_3009	-	argininosuccinate lyase
2985	 66.92	0	3148806..3150008	-	400	119869042	-	Mkms_3010	-	argininosuccinate synthase
2986	 70.83	0	3150022..3150501	-	159	119869043	-	Mkms_3011	-	arginine repressor
2987	 70.24	0	3150509..3151432	-	307	119869044	-	Mkms_3012	-	ornithine carbamoyltransferase
2988	 71.22	0	3151429..3152637	-	402	119869045	argD	Mkms_3013	-	acetylornithine aminotransferase
2989	 67.93	0	3152634..3153506	-	290	119869046	-	Mkms_3014	-	acetylglutamate kinase
2990	 71.72	0	3153503..3154708	-	401	119869047	argJ	Mkms_3015	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2991	 71.05	0	3154705..3155754	-	349	119869048	argC	Mkms_3016	-	N-acetyl-gamma-glutamyl-phosphate reductase
2992	 73.03	+1	3155804..3158302	-	832	119869049	pheT	Mkms_3017	-	phenylalanyl-tRNA synthetase subunit beta
2993	 68.99	0	3158302..3159336	-	344	119869050	pheS	Mkms_3018	-	phenylalanyl-tRNA synthetase subunit alpha
2994	 71.56	0	3159404..3160405	-	333	119869051	-	Mkms_3019	-	putative adenylate/guanylate cyclase
2995	 66.86	0	3160471..3161526	+	351	119869052	-	Mkms_3020	-	hypothetical protein
2996	 65.62	0	3161531..3162769	+	412	119869053	-	Mkms_3021	-	acyl-CoA dehydrogenase domain-containing protein
2997	 72.56	+1	3162863..3163609	-	248	119869054	-	Mkms_3022	-	tRNA/rRNA methyltransferase (SpoU)
2998	 67.44	0	3163636..3164025	-	129	119869055	rplT	Mkms_3023	-	50S ribosomal protein L20
2999	 67.18	0	3164071..3164265	-	64	119869056	rpmI	Mkms_3024	-	50S ribosomal protein L35
3000	 65.13	-1	3164302..3165018	-	238	119869057	-	Mkms_3025	-	translation initiation factor 3
3001	 69.70	0	3165141..3165503	+	120	119869058	-	Mkms_3026	-	hypothetical protein
3002	 68.97	0	3165549..3168887	+	1112	119869059	lysS	Mkms_3027	-	lysyl-tRNA synthetase
3003	 70.07	0	3168929..3170278	+	449	119869060	-	Mkms_3028	-	putative esterase
3004	 71.58	0	3170406..3170588	+	60	119869061	-	Mkms_3029	-	hypothetical protein
3005	 73.69	+1	3170694..3171761	+	355	119869062	-	Mkms_3030	-	hypothetical protein
3006	 66.94	0	3171814..3173295	+	493	119869063	-	Mkms_3031	-	FAD dependent oxidoreductase
3007	 66.87	0	3173285..3176206	-	973	119869064	uvrA	Mkms_3032	-	excinuclease ABC subunit A
3008	 67.85	0	3176268..3176945	+	225	119869065	-	Mkms_3033	-	beta-lactamase domain-containing protein
3009	 72.06	+1	3176935..3177435	+	166	119869066	-	Mkms_3034	-	hypothetical protein
3010	 66.82	0	3177439..3178740	-	433	119869067	-	Mkms_3035	-	linalool 8-monooxygenase
3011	 68.68	0	3178821..3179267	-	148	119869068	-	Mkms_3036	-	UspA domain-containing protein
3012	 67.97	0	3179570..3180262	+	230	119869069	-	Mkms_3037	-	phage SPO1 DNA polymerase-related protein
3013	 69.43	0	3180238..3181104	-	288	119869070	-	Mkms_3038	-	acyl-CoA thioesterase
3014	 67.48	0	3181209..3182564	+	451	119869071	-	Mkms_3039	-	integral membrane sensor signal transduction histidine kinase
3015	 78.57	+2	3182963..3183886	+	307	119869072	-	Mkms_3040	-	gamma-aminobutyric acid A receptor, epsilon
3016	 78.85	+2	3184091..3185026	+	311	119869073	-	Mkms_3041	-	putative trans-sialidase
3017	 73.54	+1	3185023..3185400	+	125	119869074	-	Mkms_3042	-	hypothetical protein
3018	 62.92	-1	3185685..3186512	-	275	119869075	-	Mkms_3043	-	hypothetical protein
3019	 65.37	0	3186640..3187101	-	153	119869076	-	Mkms_3044	-	glyoxalase/bleomycin resistance protein/dioxygenase
3020	 66.11	0	3187202..3187561	+	119	119869077	-	Mkms_3045	-	ArsR family transcriptional regulator
3021	 71.32	0	3187732..3189129	-	465	119869078	-	Mkms_3046	-	major facilitator superfamily transporter
3022	 65.65	0	3189174..3191333	-	719	119869079	-	Mkms_3047	-	excinuclease ABC subunit B
3023	 65.94	0	3191481..3191894	+	137	119869080	-	Mkms_3048	-	hypothetical protein
3024	 69.41	0	3191908..3192453	+	181	119869081	-	Mkms_3049	-	hypothetical protein
3025	 69.43	0	3192458..3193615	-	385	119869082	coaE	Mkms_3050	-	fused dephospho-CoA kinase/unknown domain-containing protein
3026	 64.10	-1	3193692..3195131	-	479	119869083	rpsA	Mkms_3051	-	30S ribosomal protein S1
3027	 71.28	0	3195256..3195840	-	194	119869084	-	Mkms_3052	-	TetR family transcriptional regulator
3028	 71.65	0	3195837..3196679	-	280	119869085	-	Mkms_3053	-	NmrA family protein
3029	 67.11	0	3196676..3197131	-	151	119869086	-	Mkms_3054	-	hypothetical protein
3030	 69.21	0	3197220..3198398	+	392	119869087	-	Mkms_3055	-	hypothetical protein
3031	 71.54	0	3198437..3199072	+	211	119869088	-	Mkms_3056	-	lysine exporter protein LysE/YggA
3032	 67.64	0	3199074..3201836	-	920	119869089	-	Mkms_3057	-	DNA polymerase I
3033	 73.40	+1	3201817..3202707	-	296	119869090	-	Mkms_3058	-	LysR family transcriptional regulator
3034	 69.05	0	3202779..3203450	+	223	119869091	-	Mkms_3059	-	hypothetical protein
3035	 66.89	0	3203497..3203937	+	146	119869092	-	Mkms_3060	-	hypothetical protein
3036	 69.33	0	3203934..3205133	+	399	119869093	-	Mkms_3061	-	lipid-transfer protein
3037	 65.99	0	3205154..3205897	-	247	119869094	-	Mkms_3062	-	ABC transporter related
3038	 67.03	0	3205881..3206708	-	275	119869095	-	Mkms_3063	-	ABC transporter related
3039	 67.06	0	3206705..3207985	-	426	119869096	-	Mkms_3064	-	inner-membrane translocator
3040	 64.45	-1	3207982..3209019	-	345	119869097	-	Mkms_3065	-	inner-membrane translocator
3041	 67.49	0	3209104..3210315	-	403	119869098	-	Mkms_3066	-	extracellular ligand-binding receptor
3042	 67.93	0	3210450..3211082	-	210	119869099	-	Mkms_3067	-	response regulator receiver/ANTAR domain-containing protein
3043	 63.56	-1	3211232..3212455	-	407	119869100	-	Mkms_3068	-	phage integrase family protein
3044	 66.12	0	3213311..3213679	+	122	119869101	-	Mkms_3069	-	hypothetical protein
3045	 64.21	-1	3213676..3213960	+	94	119869102	-	Mkms_3070	-	hypothetical protein
3046	 64.40	-1	3213957..3215057	+	366	119869103	-	Mkms_3071	-	hypothetical protein
3047	 65.27	-1	3215229..3215585	+	118	119869104	-	Mkms_3072	-	hypothetical protein
3048	 64.26	-1	3215582..3215830	+	82	119869105	-	Mkms_3073	-	hypothetical protein
3049	 63.67	-1	3216203..3217672	+	489	119869106	-	Mkms_3074	-	phage terminase
3050	 66.36	0	3217669..3218988	+	439	119869107	-	Mkms_3075	-	hypothetical protein
3051	 66.67	0	3218985..3219572	+	195	119869108	-	Mkms_3076	-	hypothetical protein
3052	 66.67	0	3219569..3220024	+	151	119869109	-	Mkms_3077	-	hypothetical protein
3053	 66.55	0	3220271..3221119	+	282	119869110	-	Mkms_3078	-	phage major capsid protein, HK97
3054	 66.98	0	3221119..3221439	+	106	119869111	-	Mkms_3079	-	hypothetical protein
3055	 61.63	-2	3221753..3222169	-	138	119869112	-	Mkms_3080	-	secreted metal-binding protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.