IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2833	 69.92	0	2977991..2979406	+	471	119868890	-	Mkms_2858	-	hypothetical protein
2834	 69.13	0	2979406..2980461	+	351	119868891	-	Mkms_2859	-	hypothetical protein
2835	 69.35	0	2980521..2981378	+	285	119868892	-	Mkms_2860	-	hypothetical protein
2836	 66.39	0	2981438..2983633	+	731	119868893	-	Mkms_2861	-	malate synthase G
2837	 70.65	0	2983739..2985796	+	685	119868894	-	Mkms_2862	-	hypothetical protein
2838	 70.36	0	2985881..2987233	+	450	119868895	-	Mkms_2863	-	hypothetical protein
2839	 65.92	0	2987218..2988024	-	268	119868896	-	Mkms_2864	-	short-chain dehydrogenase/reductase SDR
2840	 68.26	0	2988224..2990104	+	626	119868897	-	Mkms_2865	-	X-Pro dipeptidyl-peptidase domain-containing protein
2841	 65.33	-1	2990091..2990612	-	173	119868898	-	Mkms_2866	-	hypothetical protein
2842	 63.43	-1	2990701..2991132	+	143	119868899	-	Mkms_2867	-	hypothetical protein
2843	 64.07	-1	2991077..2991499	-	140	119868900	-	Mkms_2868	-	hypothetical protein
2844	 61.20	-2	2991580..2993208	-	542	119868901	-	Mkms_2869	-	hypothetical protein
2845	 65.38	0	2993775..2995253	+	492	119868902	-	Mkms_2870	-	hypothetical protein
2846	 66.67	0	2995275..2996159	-	294	119868903	-	Mkms_2871	-	O-methyltransferase domain-containing protein
2847	 65.69	0	2996175..2997407	-	410	119868904	-	Mkms_2872	-	acyltransferase PapA5
2848	 65.74	0	2997478..2998341	-	287	119868905	-	Mkms_2873	-	daunorubicin resistance ABC transporter, inner membrane subunit C
2849	 65.80	0	2998341..2999150	-	269	119868906	-	Mkms_2874	-	multidrug ABC transporter inner membrane protein
2850	 67.48	0	2999147..3000247	-	366	119868907	-	Mkms_2875	-	daunorubicin resistance ABC transporter ATPase subunit
2851	 68.97	0	3000304..3004722	-	1472	119868908	-	Mkms_2876	-	beta-ketoacyl synthase
2852	 69.14	0	3004719..3009281	-	1520	119868909	-	Mkms_2877	-	beta-ketoacyl synthase
2853	 69.52	0	3009287..3012859	-	1190	119868910	-	Mkms_2878	-	beta-ketoacyl synthase
2854	 69.32	0	3012865..3017607	-	1580	119868911	-	Mkms_2879	-	beta-ketoacyl synthase
2855	 67.51	0	3017604..3019499	-	631	119868912	-	Mkms_2880	-	acyl-CoA synthetase
2856	 66.88	0	3020349..3020828	+	159	119868913	-	Mkms_2881	-	hypothetical protein
2857	 65.60	0	3020979..3021725	+	248	119868914	-	Mkms_2882	-	thioesterase
2858	 69.70	0	3021730..3022125	+	131	119868915	-	Mkms_2883	-	hypothetical protein
2859	 69.97	0	3022132..3024978	-	948	119868916	-	Mkms_2884	-	glycine dehydrogenase
2860	 69.57	0	3025378..3025998	-	206	119868917	-	Mkms_2885	-	MerR family transcriptional regulator
2861	 66.46	0	3026227..3026721	-	164	119868918	-	Mkms_2886	-	hypothetical protein
2862	 70.09	0	3026826..3027584	-	252	119868919	-	Mkms_2887	-	MerR family transcriptional regulator
2863	 66.46	0	3027615..3028091	-	158	119868920	-	Mkms_2888	-	FHA domain-containing protein
2864	 66.41	0	3028263..3028658	-	131	119868921	-	Mkms_2889	-	glycine cleavage system protein H
2865	 70.73	0	3028704..3029516	-	270	119868922	-	Mkms_2890	-	hypothetical protein
2866	 66.67	0	3029519..3029851	-	110	119868923	-	Mkms_2891	-	hypothetical protein
2867	 71.91	+1	3029848..3030762	-	304	119868924	-	Mkms_2892	-	hypothetical protein
2868	 68.99	0	3030755..3031357	-	200	119868925	-	Mkms_2893	-	CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase
2869	 68.56	0	3031368..3033692	-	774	119868926	-	Mkms_2894	-	preprotein translocase subunit SecA
2870	 73.17	+1	3033697..3034542	-	281	119868927	-	Mkms_2895	-	GCN5-related N-acetyltransferase
2871	 69.83	0	3034617..3036230	+	537	119868928	-	Mkms_2896	-	pentachlorophenol monooxygenase
2872	 68.26	0	3036240..3038252	+	670	119868929	-	Mkms_2897	-	ABC transporter
2873	 65.04	-1	3038298..3040208	+	636	119868930	-	Mkms_2898	-	ABC transporter
2874	 69.70	0	3040266..3042011	+	581	119868931	-	Mkms_2899	-	hypothetical protein
2875	 67.27	0	3042018..3043499	-	493	119868932	-	Mkms_2900	-	hypothetical protein
2876	 67.05	0	3043496..3044023	-	175	119868933	-	Mkms_2901	-	hypothetical protein
2877	 69.42	0	3044056..3044709	-	217	119868934	-	Mkms_2902	-	TetR family transcriptional regulator
2878	 69.84	0	3044842..3045282	+	146	119868935	-	Mkms_2903	-	hypothetical protein
2879	 68.74	0	3045286..3045960	-	224	119868936	-	Mkms_2904	-	hypothetical protein
2880	 70.08	0	3046077..3047483	-	468	119868937	-	Mkms_2905	-	FAD dependent oxidoreductase
2881	 71.34	0	3047493..3048647	-	384	119868938	-	Mkms_2906	-	sodium/hydrogen exchanger
2882	 70.79	0	3048651..3049184	-	177	119868939	-	Mkms_2907	-	TrkA domain-containing protein
2883	 65.39	0	3049206..3050144	-	312	119868940	-	Mkms_2908	-	sterol desaturase-related protein
2884	 70.42	0	3050182..3051753	-	523	119868941	-	Mkms_2909	-	carboxylesterase, type B
2885	 70.72	0	3051822..3052166	+	114	119868942	-	Mkms_2910	-	small multidrug resistance protein
2886	 68.83	0	3052166..3052489	+	107	119868943	-	Mkms_2911	-	small multidrug resistance protein
2887	 72.08	+1	3052458..3053657	-	399	119868944	-	Mkms_2912	-	major facilitator superfamily transporter
2888	 71.57	0	3053747..3055906	+	719	119868945	-	Mkms_2913	-	4-alpha-glucanotransferase
2889	 70.41	0	3055903..3056409	+	168	119868946	-	Mkms_2914	-	hypothetical protein
2890	 68.39	0	3056412..3057107	-	231	119868947	-	Mkms_2915	-	short-chain dehydrogenase/reductase SDR
2891	 68.05	0	3057214..3057648	-	144	119868948	-	Mkms_2916	-	cyclase/dehydrase
2892	 68.68	0	3057680..3058525	-	281	119868949	-	Mkms_2917	-	phospholipid/glycerol acyltransferase
2893	 66.44	0	3058620..3059519	+	299	119868950	-	Mkms_2918	-	hypothetical protein
2894	 72.45	+1	3059519..3060625	+	368	119868951	-	Mkms_2919	-	ferredoxin
2895	 66.96	0	3060629..3060973	-	114	119868952	-	Mkms_2920	-	hypothetical protein
2896	 70.55	0	3060991..3062046	+	351	119868953	-	Mkms_2921	-	luciferase family protein
2897	 68.97	0	3062043..3062606	+	187	119868954	-	Mkms_2922	-	hypothetical protein
2898	 68.99	0	3062479..3062952	-	157	119868955	-	Mkms_2923	-	NUDIX hydrolase
2899	 60.94	-2	3062970..3063161	-	63	119868956	-	Mkms_2924	-	hypothetical protein
2900	 70.07	0	3063194..3064516	-	440	119868957	-	Mkms_2925	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2901	 67.92	0	3064520..3065077	-	185	119868958	-	Mkms_2926	-	PfpI family intracellular peptidase
2902	 70.37	0	3065161..3066213	+	350	119868959	-	Mkms_2927	-	alpha/beta hydrolase domain-containing protein
2903	 70.04	0	3066224..3066994	+	256	119868960	-	Mkms_2928	-	GDSL family lipase
2904	 65.19	-1	3066999..3067880	+	293	119868961	-	Mkms_2929	-	cyclopropane-fatty-acyl-phospholipid synthase
2905	 63.87	-1	3067887..3068459	-	190	119868962	-	Mkms_2930	-	hypothetical protein
2906	 68.75	0	3068513..3068704	-	63	119868963	-	Mkms_2931	-	hypothetical protein
2907	 73.94	+1	3068714..3069538	-	274	119868964	-	Mkms_2932	-	nuclear transport factor 2
2908	 68.25	0	3069648..3070025	+	125	119868965	-	Mkms_2933	-	hypothetical protein
2909	 70.45	0	3070102..3070524	+	140	119868966	-	Mkms_2934	-	hypothetical protein
2910	 68.63	0	3070556..3072232	+	558	119868967	-	Mkms_2935	-	acyl-CoA synthetase
2911	 68.66	0	3072303..3073103	+	266	119868968	-	Mkms_2936	-	alpha/beta hydrolase fold
2912	 68.95	0	3073100..3074281	+	393	119868969	-	Mkms_2937	-	putative PAS/PAC sensor protein
2913	 70.93	0	3074284..3075759	+	491	119868970	-	Mkms_2938	-	AMP-dependent synthetase and ligase
2914	 66.67	0	3075821..3076183	-	120	119868971	-	Mkms_2939	-	hypothetical protein
2915	 69.01	0	3076259..3076897	+	212	119868972	-	Mkms_2940	-	SOUL heme-binding protein
2916	 64.69	-1	3076907..3077716	-	269	119868973	-	Mkms_2941	-	RNA polymerase sigma factor SigF
2917	 68.23	0	3078262..3078708	+	148	119868974	-	Mkms_2942	-	anti-sigma-factor antagonist
2918	 63.81	-1	3078717..3079031	-	104	119868975	-	Mkms_2943	-	hypothetical protein
2919	 65.16	-1	3079038..3079832	-	264	119868976	-	Mkms_2944	-	glutamine cyclotransferase
2920	 68.95	0	3079858..3080469	-	203	119868977	-	Mkms_2945	-	hypothetical protein
2921	 74.09	+1	3080499..3081050	-	183	119868978	-	Mkms_2946	-	methyltransferase type 12
2922	 71.99	+1	3081047..3082324	-	425	119868979	-	Mkms_2947	-	hypothetical protein
2923	 68.25	0	3082372..3083127	+	251	119868980	-	Mkms_2948	-	hypothetical protein
2924	 68.94	0	3083127..3083918	+	263	119868981	-	Mkms_2949	-	two component transcriptional regulator
2925	 70.18	0	3083915..3085054	+	379	119868982	-	Mkms_2950	-	integral membrane sensor signal transduction histidine kinase
2926	 69.80	0	3085303..3086547	-	414	119868983	-	Mkms_2951	-	protein kinase
2927	 66.01	0	3086613..3087071	-	152	119868984	-	Mkms_2952	-	transglycosylase domain-containing protein
2928	 66.98	0	3087501..3087821	-	106	119868985	-	Mkms_2953	-	hypothetical protein
2929	 67.02	0	3087821..3088666	-	281	119868986	-	Mkms_2954	-	phage major capsid protein, HK97
2930	 66.67	0	3088913..3089368	-	151	119868987	-	Mkms_2955	-	hypothetical protein
2931	 68.36	0	3089365..3089955	-	196	119868988	-	Mkms_2956	-	hypothetical protein
2932	 65.76	0	3089952..3091271	-	439	119868989	-	Mkms_2957	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.