IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2754	 64.41	-1	2898914..2899798	-	294	119868811	-	Mkms_2779	-	cyclopropane-fatty-acyl-phospholipid synthase
2755	 66.67	0	2900037..2900252	+	71	119868812	-	Mkms_2780	-	hypothetical protein
2756	 72.66	+1	2900264..2900830	+	188	119868813	-	Mkms_2781	-	chorismate mutase
2757	 70.20	0	2900849..2901697	+	282	119868814	-	Mkms_2782	-	short chain dehydrogenase
2758	 67.32	0	2901859..2902320	+	153	119868815	-	Mkms_2783	-	cyclase/dehydrase
2759	 67.34	0	2902317..2904242	-	641	119868816	-	Mkms_2784	-	hypothetical protein
2760	 67.79	0	2904293..2904739	+	148	119868817	-	Mkms_2785	-	hypothetical protein
2761	 67.13	0	2904750..2906033	+	427	119868818	-	Mkms_2786	-	cytochrome P450
2762	 72.77	+1	2905996..2907339	-	447	119868819	-	Mkms_2787	-	FAD dependent oxidoreductase
2763	 71.01	0	2907398..2908042	+	214	119868820	-	Mkms_2788	-	TetR family transcriptional regulator
2764	 69.30	0	2908105..2909205	+	366	119868821	-	Mkms_2789	-	hypothetical protein
2765	 66.53	0	2909190..2909912	-	240	119868822	-	Mkms_2790	-	HAD family hydrolase
2766	 70.94	0	2909909..2910517	-	202	119868823	-	Mkms_2791	-	hypothetical protein
2767	 70.52	0	2910593..2911759	-	388	119868824	-	Mkms_2792	-	glycosyl transferase, group 1
2768	 68.07	0	2911880..2913301	+	473	119868825	-	Mkms_2793	-	hypothetical protein
2769	 69.52	0	2913289..2914200	-	303	119868826	-	Mkms_2794	-	dienelactone hydrolase
2770	 69.37	0	2914267..2915190	+	307	119868827	-	Mkms_2795	-	short chain dehydrogenase
2771	 68.17	0	2915273..2917069	+	598	119868828	-	Mkms_2796	-	hypothetical protein
2772	 66.67	0	2917059..2917502	+	147	119868829	-	Mkms_2797	-	limonene-1,2-epoxide hydrolase
2773	 69.62	0	2917539..2918891	-	450	119868830	-	Mkms_2798	-	glutamine synthetase, catalytic region
2774	 67.68	0	2918936..2919430	-	164	119868831	-	Mkms_2799	-	carboxymuconolactone decarboxylase
2775	 68.77	0	2919457..2921505	-	682	119868832	-	Mkms_2800	-	EmrB/QacA family drug resistance transporter
2776	 57.50	-2	2921664..2922143	-	159	119868833	-	Mkms_2801	-	bacterioferritin
2777	 64.30	-1	2922382..2923014	+	210	119868834	-	Mkms_2802	-	FadD16
2778	 68.52	0	2923026..2923241	+	71	119868835	-	Mkms_2803	-	BFD/(2Fe-2S)-binding domain-containing protein
2779	 69.43	0	2923246..2924004	-	252	119868836	-	Mkms_2804	-	enoyl-CoA hydratase/isomerase
2780	 69.08	0	2924020..2924724	-	234	119868837	-	Mkms_2805	-	hypothetical protein
2781	 72.21	+1	2924818..2926767	+	649	119868838	-	Mkms_2806	-	membrane protein-like protein
2782	 68.38	0	2926736..2927437	-	233	119868839	-	Mkms_2807	-	thioesterase superfamily protein
2783	 70.30	0	2927483..2928886	+	467	119868840	-	Mkms_2808	-	amidase
2784	 68.11	0	2928883..2929575	+	230	119868841	-	Mkms_2809	-	isochorismatase hydrolase
2785	 67.29	0	2929585..2931177	+	530	119868842	-	Mkms_2810	-	xanthine/uracil/vitamin C permease
2786	 70.77	0	2931266..2931826	+	186	119868843	-	Mkms_2811	-	TetR family transcriptional regulator
2787	 71.86	+1	2931848..2932867	+	339	119868844	-	Mkms_2812	-	integral membrane protein
2788	 70.57	0	2932845..2934536	+	563	119868845	-	Mkms_2813	-	TPR repeat-containing protein
2789	 72.92	+1	2934567..2935046	+	159	119868846	-	Mkms_2814	-	CMP/dCMP deaminase, zinc-binding
2790	 69.12	0	2935043..2936344	+	433	119868847	-	Mkms_2815	-	alpha amylase, catalytic region
2791	 68.53	0	2936349..2936777	-	142	119868848	-	Mkms_2816	-	hypothetical protein
2792	 65.67	0	2936977..2937981	+	334	119868849	-	Mkms_2817	-	putative esterase
2793	 71.28	0	2938089..2938565	+	158	119868850	-	Mkms_2818	-	hypothetical protein
2794	 70.28	0	2938631..2940982	+	783	119868851	-	Mkms_2819	-	ATP-dependent protease La
2795	 70.57	0	2941054..2941386	+	110	119868852	-	Mkms_2820	-	hypothetical protein
2796	 70.30	0	2941424..2942056	+	210	119868853	-	Mkms_2821	-	hypothetical protein
2797	 69.25	0	2942053..2942787	+	244	119868854	-	Mkms_2822	-	hypothetical protein
2798	 71.52	0	2942835..2943452	+	205	119868855	-	Mkms_2823	-	hypothetical protein
2799	 65.81	0	2943532..2944587	-	351	119868856	-	Mkms_2824	-	periplasmic binding protein/LacI transcriptional regulator
2800	 65.62	0	2944635..2945684	-	349	119868857	-	Mkms_2825	-	periplasmic binding protein/LacI transcriptional regulator
2801	 65.40	0	2945727..2946755	-	342	119868858	-	Mkms_2826	-	inner-membrane translocator
2802	 67.51	0	2946752..2948293	-	513	119868859	-	Mkms_2827	-	ABC transporter related
2803	 70.64	0	2948297..2949328	-	343	119868860	-	Mkms_2828	-	alcohol dehydrogenase
2804	 67.45	0	2949322..2950089	-	255	119868861	-	Mkms_2829	-	short-chain dehydrogenase/reductase SDR
2805	 68.52	0	2950089..2951114	-	341	119868862	-	Mkms_2830	-	alcohol dehydrogenase
2806	 72.50	+1	2951116..2951766	-	216	119868863	-	Mkms_2831	-	ribulose-phosphate 3-epimerase
2807	 72.13	+1	2951763..2953244	-	493	119868864	-	Mkms_2832	-	xylulokinase
2808	 72.87	+1	2953241..2953885	-	214	119868865	-	Mkms_2833	-	sugar isomerase (SIS)
2809	 69.71	0	2954043..2954963	+	306	119868866	-	Mkms_2834	-	DeoR family transcriptional regulator
2810	 70.04	0	2954992..2955762	+	256	119868867	-	Mkms_2835	-	short chain dehydrogenase
2811	 69.57	0	2955755..2957233	-	492	119868868	-	Mkms_2836	-	acetyl-CoA acetyltransferase
2812	 67.29	0	2957415..2959835	+	806	119868869	-	Mkms_2837	-	putative phosphoketolase
2813	 68.98	0	2959864..2960598	+	244	119868870	-	Mkms_2838	-	abortive infection protein
2814	 65.96	0	2960705..2960989	+	94	119868871	-	Mkms_2839	-	hypothetical protein
2815	 74.55	+1	2961081..2962082	-	333	119868872	-	Mkms_2840	-	fibronectin-attachment family protein
2816	 74.74	+1	2962282..2963358	-	358	119868873	-	Mkms_2841	-	ABC transporter related
2817	 72.59	+1	2963355..2964164	-	269	119868874	-	Mkms_2842	-	NifC-like ABC-type porter
2818	 70.16	0	2964298..2964984	+	228	119868875	-	Mkms_2843	-	short chain dehydrogenase
2819	 65.16	-1	2965003..2965932	+	309	119868876	-	Mkms_2844	-	luciferase family protein
2820	 67.89	0	2966043..2967428	+	461	119868877	-	Mkms_2845	-	NADH dehydrogenase
2821	 72.67	+1	2967421..2968053	-	210	119868878	-	Mkms_2846	-	putative urease accessory protein
2822	 69.12	0	2968053..2968745	-	230	119868879	-	Mkms_2847	-	urease accessory protein UreG
2823	 74.37	+1	2968771..2969406	-	211	119868880	-	Mkms_2848	-	urease accessory protein UreF
2824	 69.63	0	2969423..2971144	-	573	119868881	ureC	Mkms_2849	-	urease subunit alpha
2825	 70.75	0	2971141..2971458	-	105	119868882	-	Mkms_2850	-	urease, beta subunit
2826	 70.63	0	2971467..2971769	-	100	119868883	ureA	Mkms_2851	-	urease subunit gamma
2827	 67.65	0	2971818..2972222	-	134	119868884	-	Mkms_2852	-	hypothetical protein
2828	 71.83	+1	2972397..2973170	-	257	119868885	-	Mkms_2853	-	hypothetical protein
2829	 71.22	0	2973374..2973790	+	138	119868886	-	Mkms_2854	-	CopY family transcriptional regulator
2830	 72.87	+1	2973805..2974755	+	316	119868887	-	Mkms_2855	-	peptidase M48, Ste24p
2831	 67.49	0	2974804..2976264	+	486	119868888	-	Mkms_2856	-	6-phosphogluconate dehydrogenase
2832	 70.91	0	2976348..2977784	+	478	119868889	-	Mkms_2857	-	inositol-5-monophosphate dehydrogenase
2833	 69.92	0	2977991..2979406	+	471	119868890	-	Mkms_2858	-	hypothetical protein
2834	 69.13	0	2979406..2980461	+	351	119868891	-	Mkms_2859	-	hypothetical protein
2835	 69.35	0	2980521..2981378	+	285	119868892	-	Mkms_2860	-	hypothetical protein
2836	 66.39	0	2981438..2983633	+	731	119868893	-	Mkms_2861	-	malate synthase G
2837	 70.65	0	2983739..2985796	+	685	119868894	-	Mkms_2862	-	hypothetical protein
2838	 70.36	0	2985881..2987233	+	450	119868895	-	Mkms_2863	-	hypothetical protein
2839	 65.92	0	2987218..2988024	-	268	119868896	-	Mkms_2864	-	short-chain dehydrogenase/reductase SDR
2840	 68.26	0	2988224..2990104	+	626	119868897	-	Mkms_2865	-	X-Pro dipeptidyl-peptidase domain-containing protein
2841	 65.33	-1	2990091..2990612	-	173	119868898	-	Mkms_2866	-	hypothetical protein
2842	 63.43	-1	2990701..2991132	+	143	119868899	-	Mkms_2867	-	hypothetical protein
2843	 64.07	-1	2991077..2991499	-	140	119868900	-	Mkms_2868	-	hypothetical protein
2844	 61.20	-2	2991580..2993208	-	542	119868901	-	Mkms_2869	-	hypothetical protein
2845	 65.38	0	2993775..2995253	+	492	119868902	-	Mkms_2870	-	hypothetical protein
2846	 66.67	0	2995275..2996159	-	294	119868903	-	Mkms_2871	-	O-methyltransferase domain-containing protein
2847	 65.69	0	2996175..2997407	-	410	119868904	-	Mkms_2872	-	acyltransferase PapA5
2848	 65.74	0	2997478..2998341	-	287	119868905	-	Mkms_2873	-	daunorubicin resistance ABC transporter, inner membrane subunit C
2849	 65.80	0	2998341..2999150	-	269	119868906	-	Mkms_2874	-	multidrug ABC transporter inner membrane protein
2850	 67.48	0	2999147..3000247	-	366	119868907	-	Mkms_2875	-	daunorubicin resistance ABC transporter ATPase subunit
2851	 68.97	0	3000304..3004722	-	1472	119868908	-	Mkms_2876	-	beta-ketoacyl synthase
2852	 69.14	0	3004719..3009281	-	1520	119868909	-	Mkms_2877	-	beta-ketoacyl synthase
2853	 69.52	0	3009287..3012859	-	1190	119868910	-	Mkms_2878	-	beta-ketoacyl synthase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.