IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
228	 74.81	+1	248169..249764	-	531	119866285	-	Mkms_0230	-	hypothetical protein
229	 66.67	0	249812..251014	-	400	119866286	-	Mkms_0231	-	hypothetical protein
230	 71.50	0	251142..252320	+	392	119866287	-	Mkms_0232	-	acyltransferase 3
231	 70.46	0	252289..253764	-	491	119866288	-	Mkms_0233	-	AMP-dependent synthetase and ligase
232	 68.71	0	253766..254743	-	325	119866289	-	Mkms_0234	-	aryldialkylphosphatase
233	 69.85	0	254842..256443	+	533	119866290	-	Mkms_0235	-	protein of unknown function DUF894, DitE
234	 73.04	+1	256418..260572	-	1384	119866291	-	Mkms_0236	-	putative transmembrane protein
235	 67.24	0	260664..260837	-	57	119866292	-	Mkms_0237	-	small secreted protein
236	 71.29	0	260863..261381	-	172	119866293	-	Mkms_0238	-	UspA domain-containing protein
237	 73.55	+1	261442..262647	+	401	119866294	-	Mkms_0239	-	Beta-N-acetylhexosaminidase
238	 72.23	+1	262655..264109	-	484	119866295	-	Mkms_0240	-	Orn/Lys/Arg decarboxylase, major region
239	 69.98	0	264099..265274	-	391	119866296	-	Mkms_0241	-	amidohydrolase 2
240	 68.26	0	265345..266853	-	502	119866297	-	Mkms_0242	-	amino acid permease-associated region
241	 72.83	+1	266877..268190	-	437	119866298	-	Mkms_0243	-	glutamine synthetase, catalytic region
242	 71.45	0	268306..269100	+	264	119866299	-	Mkms_0244	-	glutamine amidotransferase, class-II
243	 72.92	+1	269113..269976	+	287	119866300	-	Mkms_0245	-	RpiR family transcriptional regulator
244	 66.51	0	270020..270676	+	218	119866301	-	Mkms_0246	-	TetR family transcriptional regulator
245	 70.71	0	270680..271768	-	362	119866302	-	Mkms_0247	-	hydroxyneurosporene-O-methyltransferase
246	 70.68	0	271774..272172	-	132	119866303	-	Mkms_0248	-	hypothetical protein
247	 67.38	0	272288..273133	-	281	119866304	-	Mkms_0249	-	dehydratase
248	 68.87	0	273135..274496	-	453	119866305	fabG	Mkms_0250	-	3-ketoacyl-(acyl-carrier-protein) reductase
249	 69.12	0	274607..275908	+	433	119866306	-	Mkms_0251	-	acetyl-CoA acetyltransferase
250	 66.99	0	276325..278160	-	611	119866307	-	Mkms_0252	-	acyl-CoA dehydrogenase domain-containing protein
251	 69.77	0	278569..279309	+	246	119866308	-	Mkms_0253	-	response regulator receiver/ANTAR domain-containing protein
252	 69.65	0	279328..290409	-	3693	119866309	-	Mkms_0254	-	beta-ketoacyl synthase
253	 62.38	-1	290603..292024	+	473	119866310	-	Mkms_0255	-	PapA3_1
254	 67.50	0	292051..295047	+	998	119866311	-	Mkms_0256	-	transport protein
255	 68.58	0	295047..296819	+	590	119866312	-	Mkms_0257	-	acyl-CoA synthetase
256	 69.40	0	296869..298002	+	377	119866313	-	Mkms_0258	-	hypothetical protein
257	 73.09	+1	298051..298719	-	222	119866314	-	Mkms_0259	-	hypothetical protein
258	 67.90	0	298821..299306	+	161	119866315	-	Mkms_0260	-	flavin reductase domain-containing protein
259	 68.52	0	299318..299479	-	53	119866316	-	Mkms_0261	-	hypothetical protein
260	 64.81	-1	299541..300293	-	250	119866317	-	Mkms_0262	-	fumarate reductase iron-sulfur subunit
261	 67.08	0	300290..302236	-	648	119866318	sdhA	Mkms_0263	-	succinate dehydrogenase flavoprotein subunit
262	 64.10	-1	302278..303096	-	272	119866319	-	Mkms_0264	-	putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase)
263	 63.59	-1	303194..303550	-	118	119866320	-	Mkms_0265	-	hypothetical protein
264	 71.67	0	303601..304359	+	252	119866321	-	Mkms_0266	-	hypothetical protein
265	 70.47	0	304456..304902	-	148	119866322	-	Mkms_0267	-	heat shock protein Hsp20
266	 68.67	0	305060..307702	+	880	119866323	-	Mkms_0268	-	nitrite reductase (NAD(P)H), large subunit
267	 70.70	0	307699..308070	+	123	119866324	-	Mkms_0269	-	nitrite reductase (NAD(P)H), small subunit
268	 70.35	0	308074..308643	-	189	119866325	-	Mkms_0270	-	hypothetical protein
269	 70.26	0	308716..309411	+	231	119866326	-	Mkms_0271	-	response regulator receiver/ANTAR domain-containing protein
270	 74.71	+1	309415..310110	-	231	119866327	-	Mkms_0272	-	cobalamin (vitamin B12) biosynthesis CbiX protein
271	 72.24	+1	310107..311255	-	382	119866328	-	Mkms_0273	-	bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein
272	 67.74	0	311388..312782	-	464	119866329	-	Mkms_0274	-	major facilitator transporter
273	 69.87	0	312878..313501	-	207	119866330	-	Mkms_0275	-	GCN5-related N-acetyltransferase
274	 69.00	0	313516..314457	-	313	119866331	-	Mkms_0276	-	alpha/beta hydrolase fold
275	 70.08	0	314465..315343	-	292	119866332	-	Mkms_0277	-	urea amidolyase related protein
276	 71.62	0	315382..316047	-	221	119866333	-	Mkms_0278	-	allophanate hydrolase subunit 1
277	 68.58	0	316122..316802	-	226	119866334	-	Mkms_0279	-	hypothetical protein
278	 70.70	0	316815..317780	-	321	119866335	-	Mkms_0280	-	periplasmic binding protein
279	 66.04	0	317826..318623	-	265	119866336	-	Mkms_0281	-	short chain dehydrogenase
280	 71.33	0	318935..319534	-	199	119866337	-	Mkms_0282	-	lysine exporter protein LysE/YggA
281	 67.70	0	319799..320569	+	256	119866338	-	Mkms_0283	-	hypothetical protein
282	 66.20	0	320573..321430	+	285	119866339	-	Mkms_0284	-	hypothetical protein
283	 67.42	0	321444..322631	+	395	119866340	-	Mkms_0285	-	virulence factor Mce family protein
284	 66.37	0	322628..323653	+	341	119866341	-	Mkms_0286	-	virulence factor Mce family protein
285	 65.93	0	323653..324735	+	360	119866342	-	Mkms_0287	-	virulence factor Mce family protein
286	 68.96	0	324732..326168	+	478	119866343	-	Mkms_0288	-	virulence factor Mce family protein
287	 68.42	0	326165..327364	+	399	119866344	-	Mkms_0289	-	virulence factor Mce family protein
288	 68.49	0	327364..328902	+	512	119866345	-	Mkms_0290	-	virulence factor Mce family protein
289	 67.68	0	328907..329401	-	164	119866346	-	Mkms_0291	-	hypothetical protein
290	 69.55	0	329541..329921	+	126	119866347	-	Mkms_0292	-	hypothetical protein
291	 67.41	0	329918..330322	+	134	119866348	-	Mkms_0293	-	hypothetical protein
292	 66.03	0	330326..330955	+	209	119866349	-	Mkms_0294	-	hypothetical protein
293	 68.10	0	330970..331458	+	162	119866350	-	Mkms_0295	-	hypothetical protein
294	 70.62	0	331455..332036	-	193	119866351	-	Mkms_0296	-	thioesterase superfamily protein
295	 70.36	0	332033..333577	-	514	119866352	-	Mkms_0297	-	3-ketosteroid-delta-1-dehydrogenase
296	 65.06	-1	333598..334344	+	248	119866353	-	Mkms_0298	-	PadR family transcriptional regulator
297	 67.32	0	334414..335640	+	408	119866354	-	Mkms_0299	-	NADH:flavin oxidoreductase/NADH oxidase
298	 68.56	0	335649..336071	+	140	119866355	-	Mkms_0300	-	hypothetical protein
299	 72.65	+1	336082..336933	+	283	119866356	-	Mkms_0301	-	luciferase family protein
300	 68.42	0	336944..337741	-	265	119866357	-	Mkms_0302	-	short-chain dehydrogenase/reductase SDR
301	 69.95	0	337761..339467	-	568	119866358	-	Mkms_0303	-	3-ketosteroid-delta-1-dehydrogenase
302	 67.67	0	339568..340362	+	264	119866359	-	Mkms_0304	-	short-chain dehydrogenase/reductase SDR
303	 72.02	+1	340359..340862	+	167	119866360	-	Mkms_0305	-	hypothetical protein
304	 64.73	-1	340914..342050	+	378	119866361	-	Mkms_0306	-	Rieske (2Fe-2S) domain-containing protein
305	 71.82	+1	342047..342337	+	96	119866362	-	Mkms_0307	-	hypothetical protein
306	 69.99	0	342347..343159	+	270	119866363	-	Mkms_0308	-	short-chain dehydrogenase/reductase SDR
307	 70.72	0	343228..344361	+	377	119866364	-	Mkms_0309	-	hypothetical protein
308	 64.25	-1	344376..345452	-	358	119866365	-	Mkms_0310	-	hypothetical protein
309	 70.98	0	345544..346494	-	316	119866366	-	Mkms_0311	-	alpha/beta hydrolase domain-containing protein
310	 68.72	0	346491..348095	-	534	119866367	-	Mkms_0312	-	hypothetical protein
311	 68.19	0	348107..348895	-	262	119866368	-	Mkms_0313	-	short-chain dehydrogenase/reductase SDR
312	 70.27	0	348907..349767	-	286	119866369	-	Mkms_0314	-	short-chain dehydrogenase/reductase SDR
313	 66.87	0	349772..350254	-	160	119866370	-	Mkms_0315	-	hypothetical protein
314	 68.70	0	350317..351102	-	261	119866371	-	Mkms_0316	-	enoyl-CoA hydratase
315	 70.40	0	351099..352517	-	472	119866372	-	Mkms_0317	-	betaine-aldehyde dehydrogenase
316	 68.02	0	352532..353638	-	368	119866373	-	Mkms_0318	-	alcohol dehydrogenase
317	 68.09	0	353651..355264	-	537	119866374	-	Mkms_0319	-	acyl-CoA synthetase
318	 68.21	0	355332..357215	+	627	119866375	-	Mkms_0320	-	hypothetical protein
319	 69.14	0	357212..358099	+	295	119866376	-	Mkms_0321	-	short-chain dehydrogenase/reductase SDR
320	 66.83	0	358105..358725	-	206	119866377	-	Mkms_0322	-	stress responsive alpha-beta barrel domain-containing protein
321	 68.71	0	358718..359059	-	113	119866378	-	Mkms_0323	-	hypothetical protein
322	 70.31	0	359052..359984	-	310	119866379	-	Mkms_0324	-	alpha/beta hydrolase domain-containing protein
323	 72.59	+1	359981..360841	-	286	119866380	-	Mkms_0325	-	IclR family transcriptional regulator
324	 70.70	0	361015..362478	-	487	119866381	-	Mkms_0326	-	hypothetical protein
325	 68.10	0	362475..363383	-	302	119866382	-	Mkms_0327	-	glyoxalase/bleomycin resistance protein/dioxygenase
326	 67.68	0	363399..364580	-	393	119866383	-	Mkms_0328	-	acyl-CoA dehydrogenase type 2
327	 70.22	0	364668..365708	-	346	119866384	-	Mkms_0329	-	ferredoxin
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.