IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2616	 59.91	-2	2771423..2774086	-	887	119868673	-	Mkms_2640	-	hypothetical protein
2617	 58.75	-2	2774633..2774872	+	79	119868674	-	Mkms_2641	-	hypothetical protein
2618	 63.79	-1	2774948..2776405	-	485	119868675	-	Mkms_2642	-	Fis family transcriptional regulator
2619	 61.48	-2	2776383..2776748	-	121	119868676	-	Mkms_2643	-	hypothetical protein
2620	 59.80	-2	2776741..2777862	-	373	119868677	-	Mkms_2644	-	phage integrase family protein
2621	 55.81	-2	2778343..2778600	-	85	119868678	-	Mkms_2645	-	hypothetical protein
2622	 64.67	-1	2778857..2779408	+	183	119868679	-	Mkms_2646	-	YaeQ family protein
2623	 71.90	+1	2779620..2779829	+	69	119868680	-	Mkms_2647	-	hypothetical protein
2624	 64.00	-1	2780263..2780712	+	149	119868681	-	Mkms_2648	-	hypothetical protein
2625	 64.89	-1	2781188..2782366	+	392	119868682	-	Mkms_2649	-	acyl-CoA dehydrogenase type 2
2626	 65.22	-1	2782369..2783334	+	321	119868683	-	Mkms_2650	-	fumarylacetoacetate (FAA) hydrolase
2627	 67.55	0	2783340..2785256	+	638	119868684	-	Mkms_2651	-	acyl-CoA synthetase
2628	 64.88	-1	2785213..2785659	-	148	119868685	-	Mkms_2652	-	hypothetical protein
2629	 66.67	0	2785752..2786600	+	282	119868686	-	Mkms_2653	-	LysR family transcriptional regulator
2630	 66.99	0	2786692..2787315	+	207	119868687	-	Mkms_2654	-	TetR family transcriptional regulator
2631	 68.93	0	2787335..2787511	-	58	119868688	-	Mkms_2655	-	putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase
2632	 64.14	-1	2787521..2788390	-	289	119868689	-	Mkms_2656	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
2633	 65.27	-1	2788424..2789926	-	500	119868690	-	Mkms_2657	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
2634	 64.35	-1	2789923..2790873	-	316	119868691	-	Mkms_2658	-	dihydrodipicolinate synthase
2635	 67.25	0	2790870..2792399	-	509	119868692	-	Mkms_2659	-	hypothetical protein
2636	 64.62	-1	2792582..2793118	+	178	119868693	-	Mkms_2660	-	flavin reductase domain-containing protein
2637	 64.31	-1	2793293..2794651	+	452	119868694	-	Mkms_2661	-	4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit
2638	 63.67	-1	2794692..2796527	+	611	119868695	-	Mkms_2662	-	acyl-CoA dehydrogenase domain-containing protein
2639	 68.04	0	2797132..2798004	+	290	119868696	-	Mkms_2663	-	short-chain dehydrogenase/reductase SDR
2640	 64.38	-1	2798013..2798492	+	159	119868697	-	Mkms_2664	-	MerR family transcriptional regulator
2641	 65.41	0	2798595..2799392	+	265	119868698	-	Mkms_2665	-	dienelactone hydrolase
2642	 66.00	0	2799374..2800267	-	297	119868699	-	Mkms_2666	-	helix-turn-helix domain-containing protein
2643	 66.08	0	2800311..2801165	-	284	119868700	-	Mkms_2667	-	short-chain dehydrogenase/reductase SDR
2644	 67.91	0	2801240..2801800	-	186	119868701	-	Mkms_2668	-	TetR family transcriptional regulator
2645	 66.93	0	2801891..2802637	+	248	119868702	-	Mkms_2669	-	short-chain dehydrogenase/reductase SDR
2646	 67.97	0	2802650..2803342	-	230	119868703	-	Mkms_2670	-	helix-turn-helix, type 11 domain-containing protein
2647	 63.95	-1	2803364..2803768	-	134	119868704	-	Mkms_2671	-	hypothetical protein
2648	 65.96	0	2803971..2805665	+	564	119868705	-	Mkms_2672	-	glucose-methanol-choline oxidoreductase
2649	 67.41	0	2805758..2806567	+	269	119868706	-	Mkms_2673	-	hypothetical protein
2650	 70.63	0	2806783..2807160	-	125	119868707	-	Mkms_2674	-	hypothetical protein
2651	 64.72	-1	2807290..2807751	-	153	119868708	-	Mkms_2675	-	hypothetical protein
2652	 64.37	-1	2808025..2808591	+	188	119868709	-	Mkms_2676	-	metal-dependent phosphohydrolase
2653	 68.98	0	2808966..2809181	+	71	119868710	-	Mkms_2677	-	hypothetical protein
2654	 65.88	0	2809223..2809603	-	126	119868711	-	Mkms_2678	-	hypothetical protein
2655	 66.04	0	2809625..2809942	-	105	119868712	-	Mkms_2679	-	NIPSNAP family protein
2656	 70.02	0	2809991..2810467	-	158	119868713	-	Mkms_2680	-	hypothetical protein
2657	 67.51	0	2810573..2811163	+	196	119868714	-	Mkms_2681	-	TetR family transcriptional regulator
2658	 68.35	0	2811238..2811711	+	157	119868715	-	Mkms_2682	-	MarR family transcriptional regulator
2659	 67.28	0	2811788..2812441	+	217	119868716	-	Mkms_2683	-	deaminase-reductase domain-containing protein
2660	 64.89	-1	2812467..2813309	-	280	119868717	-	Mkms_2684	-	alpha/beta hydrolase fold
2661	 67.72	0	2813579..2814148	+	189	119868718	-	Mkms_2685	-	hypothetical protein
2662	 65.15	-1	2814152..2814679	-	175	119868719	-	Mkms_2686	-	hypothetical protein
2663	 64.80	-1	2814737..2815591	-	284	119868720	-	Mkms_2687	-	FliA/WhiG family RNA polymerase sigma factor
2664	 69.61	0	2815827..2816336	-	169	119868721	-	Mkms_2688	-	MarR family transcriptional regulator
2665	 66.86	0	2816437..2816955	+	172	119868722	-	Mkms_2689	-	hypothetical protein
2666	 64.98	-1	2817002..2817415	-	137	119868723	-	Mkms_2690	-	hypothetical protein
2667	 66.67	0	2817489..2817935	-	148	119868724	-	Mkms_2691	-	hypothetical protein
2668	 67.34	0	2818027..2818470	+	147	119868725	-	Mkms_2692	-	hypothetical protein
2669	 67.04	0	2818498..2819853	+	451	119868726	-	Mkms_2693	-	hypothetical protein
2670	 63.93	-1	2819838..2821190	-	450	119868727	-	Mkms_2694	-	amino acid permease-associated region
2671	 66.20	0	2821471..2821896	+	141	119868728	-	Mkms_2695	-	hypothetical protein
2672	 67.16	0	2821915..2822322	-	135	119868729	-	Mkms_2696	-	hypothetical protein
2673	 67.99	0	2822433..2823035	-	200	119868730	-	Mkms_2697	-	TetR family transcriptional regulator
2674	 67.60	0	2823047..2823799	-	250	119868731	-	Mkms_2698	-	short-chain dehydrogenase/reductase SDR
2675	 71.40	0	2824074..2824580	+	168	119868732	-	Mkms_2699	-	peptidylprolyl isomerase, FKBP-type
2676	 65.44	0	2824584..2824991	-	135	119868733	-	Mkms_2700	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2677	 66.96	0	2825104..2826117	+	337	119868734	-	Mkms_2701	-	acetamidase/formamidase
2678	 71.26	0	2826128..2826889	+	253	119868735	-	Mkms_2702	-	short-chain dehydrogenase/reductase SDR
2679	 70.13	0	2826894..2827787	-	297	119868736	-	Mkms_2703	-	hypothetical protein
2680	 73.03	+1	2827869..2828261	+	130	119868737	-	Mkms_2704	-	hypothetical protein
2681	 68.74	0	2828276..2828854	+	192	119868738	-	Mkms_2705	-	hypothetical protein
2682	 69.55	0	2829081..2830502	+	473	119868739	-	Mkms_2706	-	monooxygenase, FAD-binding
2683	 66.76	0	2830531..2831601	+	356	119868740	-	Mkms_2707	-	aldo/keto reductase
2684	 72.18	+1	2831611..2831973	+	120	119868741	-	Mkms_2708	-	RNA-binding S4 domain-containing protein
2685	 68.35	0	2832023..2832796	+	257	119868742	-	Mkms_2709	-	enoyl-CoA hydratase/isomerase
2686	 65.41	0	2832806..2833918	-	370	119868743	-	Mkms_2710	-	radical SAM domain-containing protein
2687	 71.23	0	2833969..2835588	+	539	119868744	-	Mkms_2711	-	AMP-dependent synthetase and ligase
2688	 69.00	0	2835734..2836717	-	327	119868745	-	Mkms_2712	-	hypothetical protein
2689	 69.22	0	2836772..2838022	-	416	119868746	-	Mkms_2713	-	hypothetical protein
2690	 68.33	0	2838019..2839101	-	360	119868747	-	Mkms_2714	-	hypothetical protein
2691	 69.46	0	2839098..2839742	-	214	119868748	-	Mkms_2715	-	TetR family transcriptional regulator
2692	 68.24	0	2839886..2841916	+	676	119868749	-	Mkms_2716	-	hypothetical protein
2693	 72.20	+1	2841993..2842607	-	204	119868750	-	Mkms_2717	-	NLP/P60 protein
2694	 68.33	0	2842841..2843860	-	339	119868751	-	Mkms_2718	-	alcohol dehydrogenase
2695	 72.04	+1	2843931..2844377	+	148	119868752	-	Mkms_2719	-	MOSC domain-containing protein
2696	 68.97	0	2844383..2845165	-	260	119868753	-	Mkms_2720	-	hypothetical protein
2697	 68.56	0	2845209..2845472	+	87	119868754	-	Mkms_2721	-	hypothetical protein
2698	 69.89	0	2845484..2848027	-	847	119868755	-	Mkms_2722	-	hypothetical protein
2699	 69.65	0	2848058..2848894	-	278	119868756	-	Mkms_2723	-	hypothetical protein
2700	 72.09	+1	2849253..2850764	-	503	119868757	-	Mkms_2724	-	propionyl-CoA carboxylase
2701	 69.20	0	2850802..2851236	-	144	119868758	-	Mkms_2725	-	hypothetical protein
2702	 68.78	0	2851408..2851881	+	157	119868759	-	Mkms_2726	-	ferric uptake regulator family protein
2703	 65.91	0	2851929..2854178	+	749	119868760	-	Mkms_2727	-	catalase/peroxidase HPI
2704	 70.56	0	2855161..2855853	-	230	119868761	-	Mkms_2729	-	GDSL family lipase
2705	 67.65	0	2855972..2857195	-	407	119868762	-	Mkms_2730	-	acyltransferase 3
2706	 71.02	0	2857352..2858155	-	267	119868763	-	Mkms_2731	-	hypothetical protein
2707	 69.69	0	2858282..2859505	+	407	119868764	-	Mkms_2732	-	response regulator receiver protein
2708	 67.05	0	2859502..2861085	+	527	119868765	-	Mkms_2733	-	multi-sensor signal transduction histidine kinase
2709	 62.61	-1	2861082..2861525	+	147	119868766	-	Mkms_2734	-	response regulator receiver protein
2710	 74.44	+1	2861536..2862204	+	222	119868767	-	Mkms_2735	-	hypothetical protein
2711	 66.93	0	2862209..2862961	-	250	119868768	-	Mkms_2736	-	ArsR family transcriptional regulator
2712	 71.12	0	2863214..2863819	+	201	119868769	-	Mkms_2737	-	hypothetical protein
2713	 72.30	+1	2863849..2864985	+	378	119868770	-	Mkms_2738	-	type I phosphodiesterase/nucleotide pyrophosphatase
2714	 71.46	0	2865033..2865512	+	159	119868771	-	Mkms_2739	-	hypothetical protein
2715	 72.82	+1	2865539..2866285	+	248	119868772	-	Mkms_2740	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.