IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2591	 64.81	-1	2748034..2748465	+	143	119868648	-	Mkms_2613	-	hypothetical protein
2592	 70.77	0	2748462..2749925	-	487	119868649	-	Mkms_2614	-	major facilitator superfamily transporter
2593	 68.33	0	2750038..2750517	+	159	119868650	-	Mkms_2615	-	TspO and MBR like proteins
2594	 65.53	0	2750575..2751102	+	175	119868651	-	Mkms_2616	-	hypothetical protein
2595	 70.18	0	2751106..2752188	-	360	119868652	-	Mkms_2617	-	3-isopropylmalate dehydrogenase
2596	 69.71	0	2752251..2753303	-	350	119868653	-	Mkms_2618	-	tartrate dehydrogenase
2597	 67.04	0	2753300..2754904	-	534	119868654	-	Mkms_2619	-	anion transporter
2598	 69.05	0	2755003..2755422	-	139	119868655	-	Mkms_2620	-	hypothetical protein
2599	 72.28	+1	2755547..2755813	-	88	119868656	-	Mkms_2621	-	hypothetical protein
2600	 66.19	0	2755908..2756324	-	138	119868657	-	Mkms_2622	-	hypothetical protein
2601	 67.08	0	2756350..2756832	-	160	119868658	-	Mkms_2623	-	MarR family transcriptional regulator
2602	 69.46	0	2756870..2757763	+	297	119868659	-	Mkms_2624	-	hypothetical protein
2603	 68.87	0	2757773..2758180	-	135	119868660	-	Mkms_2625	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2604	 72.17	+1	2758177..2759775	-	532	119868661	-	Mkms_2626	-	fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
2605	 71.54	0	2759759..2760496	-	245	119868662	-	Mkms_2627	-	ABC transporter related
2606	 67.13	0	2760493..2761362	-	289	119868663	-	Mkms_2628	-	binding-protein-dependent transport systems inner membrane component
2607	 67.29	0	2761359..2762318	-	319	119868664	-	Mkms_2629	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
2608	 66.19	0	2762500..2763126	+	208	119868665	-	Mkms_2630	-	uncharacterized peroxidase-related enzyme
2609	 68.78	0	2763131..2764027	-	298	119868666	-	Mkms_2631	-	6-phosphogluconate dehydrogenase, NAD-binding
2610	 68.42	0	2764558..2765526	+	322	119868667	-	Mkms_2633	-	putative integral membrane protein
2611	 61.90	-2	2765822..2766052	-	76	119868668	-	Mkms_2634	-	hypothetical protein
2612	 68.59	0	2766275..2767576	+	433	119868669	-	Mkms_2635	-	tryptophan synthase subunit beta
2613	 69.07	0	2767638..2768177	+	179	119868670	-	Mkms_2636	-	hypothetical protein
2614	 64.06	-1	2768671..2769015	+	114	119868671	-	Mkms_2637	-	Fis family transcriptional regulator
2615	 65.12	-1	2769093..2769932	+	279	119868672	-	Mkms_2638	-	integrase catalytic subunit
2616	 59.91	-2	2771423..2774086	-	887	119868673	-	Mkms_2640	-	hypothetical protein
2617	 58.75	-2	2774633..2774872	+	79	119868674	-	Mkms_2641	-	hypothetical protein
2618	 63.79	-1	2774948..2776405	-	485	119868675	-	Mkms_2642	-	Fis family transcriptional regulator
2619	 61.48	-2	2776383..2776748	-	121	119868676	-	Mkms_2643	-	hypothetical protein
2620	 59.80	-2	2776741..2777862	-	373	119868677	-	Mkms_2644	-	phage integrase family protein
2621	 55.81	-2	2778343..2778600	-	85	119868678	-	Mkms_2645	-	hypothetical protein
2622	 64.67	-1	2778857..2779408	+	183	119868679	-	Mkms_2646	-	YaeQ family protein
2623	 71.90	+1	2779620..2779829	+	69	119868680	-	Mkms_2647	-	hypothetical protein
2624	 64.00	-1	2780263..2780712	+	149	119868681	-	Mkms_2648	-	hypothetical protein
2625	 64.89	-1	2781188..2782366	+	392	119868682	-	Mkms_2649	-	acyl-CoA dehydrogenase type 2
2626	 65.22	-1	2782369..2783334	+	321	119868683	-	Mkms_2650	-	fumarylacetoacetate (FAA) hydrolase
2627	 67.55	0	2783340..2785256	+	638	119868684	-	Mkms_2651	-	acyl-CoA synthetase
2628	 64.88	-1	2785213..2785659	-	148	119868685	-	Mkms_2652	-	hypothetical protein
2629	 66.67	0	2785752..2786600	+	282	119868686	-	Mkms_2653	-	LysR family transcriptional regulator
2630	 66.99	0	2786692..2787315	+	207	119868687	-	Mkms_2654	-	TetR family transcriptional regulator
2631	 68.93	0	2787335..2787511	-	58	119868688	-	Mkms_2655	-	putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase
2632	 64.14	-1	2787521..2788390	-	289	119868689	-	Mkms_2656	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
2633	 65.27	-1	2788424..2789926	-	500	119868690	-	Mkms_2657	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
2634	 64.35	-1	2789923..2790873	-	316	119868691	-	Mkms_2658	-	dihydrodipicolinate synthase
2635	 67.25	0	2790870..2792399	-	509	119868692	-	Mkms_2659	-	hypothetical protein
2636	 64.62	-1	2792582..2793118	+	178	119868693	-	Mkms_2660	-	flavin reductase domain-containing protein
2637	 64.31	-1	2793293..2794651	+	452	119868694	-	Mkms_2661	-	4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit
2638	 63.67	-1	2794692..2796527	+	611	119868695	-	Mkms_2662	-	acyl-CoA dehydrogenase domain-containing protein
2639	 68.04	0	2797132..2798004	+	290	119868696	-	Mkms_2663	-	short-chain dehydrogenase/reductase SDR
2640	 64.38	-1	2798013..2798492	+	159	119868697	-	Mkms_2664	-	MerR family transcriptional regulator
2641	 65.41	0	2798595..2799392	+	265	119868698	-	Mkms_2665	-	dienelactone hydrolase
2642	 66.00	0	2799374..2800267	-	297	119868699	-	Mkms_2666	-	helix-turn-helix domain-containing protein
2643	 66.08	0	2800311..2801165	-	284	119868700	-	Mkms_2667	-	short-chain dehydrogenase/reductase SDR
2644	 67.91	0	2801240..2801800	-	186	119868701	-	Mkms_2668	-	TetR family transcriptional regulator
2645	 66.93	0	2801891..2802637	+	248	119868702	-	Mkms_2669	-	short-chain dehydrogenase/reductase SDR
2646	 67.97	0	2802650..2803342	-	230	119868703	-	Mkms_2670	-	helix-turn-helix, type 11 domain-containing protein
2647	 63.95	-1	2803364..2803768	-	134	119868704	-	Mkms_2671	-	hypothetical protein
2648	 65.96	0	2803971..2805665	+	564	119868705	-	Mkms_2672	-	glucose-methanol-choline oxidoreductase
2649	 67.41	0	2805758..2806567	+	269	119868706	-	Mkms_2673	-	hypothetical protein
2650	 70.63	0	2806783..2807160	-	125	119868707	-	Mkms_2674	-	hypothetical protein
2651	 64.72	-1	2807290..2807751	-	153	119868708	-	Mkms_2675	-	hypothetical protein
2652	 64.37	-1	2808025..2808591	+	188	119868709	-	Mkms_2676	-	metal-dependent phosphohydrolase
2653	 68.98	0	2808966..2809181	+	71	119868710	-	Mkms_2677	-	hypothetical protein
2654	 65.88	0	2809223..2809603	-	126	119868711	-	Mkms_2678	-	hypothetical protein
2655	 66.04	0	2809625..2809942	-	105	119868712	-	Mkms_2679	-	NIPSNAP family protein
2656	 70.02	0	2809991..2810467	-	158	119868713	-	Mkms_2680	-	hypothetical protein
2657	 67.51	0	2810573..2811163	+	196	119868714	-	Mkms_2681	-	TetR family transcriptional regulator
2658	 68.35	0	2811238..2811711	+	157	119868715	-	Mkms_2682	-	MarR family transcriptional regulator
2659	 67.28	0	2811788..2812441	+	217	119868716	-	Mkms_2683	-	deaminase-reductase domain-containing protein
2660	 64.89	-1	2812467..2813309	-	280	119868717	-	Mkms_2684	-	alpha/beta hydrolase fold
2661	 67.72	0	2813579..2814148	+	189	119868718	-	Mkms_2685	-	hypothetical protein
2662	 65.15	-1	2814152..2814679	-	175	119868719	-	Mkms_2686	-	hypothetical protein
2663	 64.80	-1	2814737..2815591	-	284	119868720	-	Mkms_2687	-	FliA/WhiG family RNA polymerase sigma factor
2664	 69.61	0	2815827..2816336	-	169	119868721	-	Mkms_2688	-	MarR family transcriptional regulator
2665	 66.86	0	2816437..2816955	+	172	119868722	-	Mkms_2689	-	hypothetical protein
2666	 64.98	-1	2817002..2817415	-	137	119868723	-	Mkms_2690	-	hypothetical protein
2667	 66.67	0	2817489..2817935	-	148	119868724	-	Mkms_2691	-	hypothetical protein
2668	 67.34	0	2818027..2818470	+	147	119868725	-	Mkms_2692	-	hypothetical protein
2669	 67.04	0	2818498..2819853	+	451	119868726	-	Mkms_2693	-	hypothetical protein
2670	 63.93	-1	2819838..2821190	-	450	119868727	-	Mkms_2694	-	amino acid permease-associated region
2671	 66.20	0	2821471..2821896	+	141	119868728	-	Mkms_2695	-	hypothetical protein
2672	 67.16	0	2821915..2822322	-	135	119868729	-	Mkms_2696	-	hypothetical protein
2673	 67.99	0	2822433..2823035	-	200	119868730	-	Mkms_2697	-	TetR family transcriptional regulator
2674	 67.60	0	2823047..2823799	-	250	119868731	-	Mkms_2698	-	short-chain dehydrogenase/reductase SDR
2675	 71.40	0	2824074..2824580	+	168	119868732	-	Mkms_2699	-	peptidylprolyl isomerase, FKBP-type
2676	 65.44	0	2824584..2824991	-	135	119868733	-	Mkms_2700	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2677	 66.96	0	2825104..2826117	+	337	119868734	-	Mkms_2701	-	acetamidase/formamidase
2678	 71.26	0	2826128..2826889	+	253	119868735	-	Mkms_2702	-	short-chain dehydrogenase/reductase SDR
2679	 70.13	0	2826894..2827787	-	297	119868736	-	Mkms_2703	-	hypothetical protein
2680	 73.03	+1	2827869..2828261	+	130	119868737	-	Mkms_2704	-	hypothetical protein
2681	 68.74	0	2828276..2828854	+	192	119868738	-	Mkms_2705	-	hypothetical protein
2682	 69.55	0	2829081..2830502	+	473	119868739	-	Mkms_2706	-	monooxygenase, FAD-binding
2683	 66.76	0	2830531..2831601	+	356	119868740	-	Mkms_2707	-	aldo/keto reductase
2684	 72.18	+1	2831611..2831973	+	120	119868741	-	Mkms_2708	-	RNA-binding S4 domain-containing protein
2685	 68.35	0	2832023..2832796	+	257	119868742	-	Mkms_2709	-	enoyl-CoA hydratase/isomerase
2686	 65.41	0	2832806..2833918	-	370	119868743	-	Mkms_2710	-	radical SAM domain-containing protein
2687	 71.23	0	2833969..2835588	+	539	119868744	-	Mkms_2711	-	AMP-dependent synthetase and ligase
2688	 69.00	0	2835734..2836717	-	327	119868745	-	Mkms_2712	-	hypothetical protein
2689	 69.22	0	2836772..2838022	-	416	119868746	-	Mkms_2713	-	hypothetical protein
2690	 68.33	0	2838019..2839101	-	360	119868747	-	Mkms_2714	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.