IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2551	 70.48	0	2702618..2703430	+	270	119868608	-	Mkms_2573	-	hypothetical protein
2552	 70.31	0	2703452..2704933	+	493	119868609	-	Mkms_2574	-	carbohydrate kinase, FGGY
2553	 69.77	0	2705036..2706001	+	321	119868610	-	Mkms_2575	-	luciferase family protein
2554	 66.39	0	2706017..2707090	+	357	119868611	-	Mkms_2576	-	dihydrodipicolinate reductase
2555	 63.23	-1	2707113..2708306	+	397	119868612	-	Mkms_2577	-	cytochrome P450
2556	 65.74	0	2708346..2709641	-	431	119868613	-	Mkms_2578	-	virulence factor Mce family protein
2557	 61.90	-2	2709815..2711095	-	426	119868614	-	Mkms_2579	-	amidohydrolase 2
2558	 65.54	0	2711110..2712084	-	324	119868615	-	Mkms_2580	-	short-chain dehydrogenase/reductase SDR
2559	 63.48	-1	2712189..2712752	-	187	119868616	-	Mkms_2581	-	acyl-CoA dehydrogenases-like protein
2560	 68.71	0	2712807..2714522	+	571	119868617	-	Mkms_2582	-	von Willebrand factor, type A
2561	 66.43	0	2714664..2715515	+	283	119868618	-	Mkms_2583	-	ATPase
2562	 63.81	-1	2715599..2716717	+	372	119868619	-	Mkms_2584	-	hypothetical protein
2563	 62.09	-2	2716722..2717858	+	378	119868620	-	Mkms_2585	-	hypothetical protein
2564	 66.86	0	2717839..2718885	+	348	119868621	-	Mkms_2586	-	short-chain dehydrogenase/reductase SDR
2565	 64.60	-1	2718878..2720380	+	500	119868622	-	Mkms_2587	-	aldehyde dehydrogenase
2566	 64.12	-1	2720451..2721668	+	405	119868623	-	Mkms_2588	-	cytochrome P450
2567	 63.84	-1	2721792..2723063	+	423	119868624	-	Mkms_2589	-	cytochrome P450
2568	 64.85	-1	2723084..2724460	+	458	119868625	-	Mkms_2590	-	diacylglycerol O-acyltransferase
2569	 64.97	-1	2724528..2725529	+	333	119868626	-	Mkms_2591	-	integrase catalytic subunit
2570	 66.17	0	2725550..2726359	-	269	119868627	-	Mkms_2592	-	phospholipid/glycerol acyltransferase
2571	 64.32	-1	2726505..2727953	-	482	119868628	-	Mkms_2593	-	TetR family transcriptional regulator
2572	 66.67	0	2728143..2729021	+	292	119868629	-	Mkms_2594	-	short-chain dehydrogenase/reductase SDR
2573	 68.49	0	2729018..2729674	-	218	119868630	-	Mkms_2595	-	TetR family transcriptional regulator
2574	 66.41	0	2729861..2730649	+	262	119868631	-	Mkms_2596	-	hypothetical protein
2575	 66.25	0	2730660..2731865	+	401	119868632	-	Mkms_2597	-	cytochrome P450
2576	 71.23	0	2731869..2732897	-	342	119868633	-	Mkms_2598	-	DeoR family transcriptional regulator
2577	 64.92	-1	2733015..2734103	+	362	119868634	-	Mkms_2599	-	alcohol dehydrogenase
2578	 64.71	-1	2734124..2735551	+	475	119868635	-	Mkms_2600	-	extracellular solute-binding protein
2579	 63.11	-1	2735564..2736520	+	318	119868636	-	Mkms_2601	-	binding-protein-dependent transport systems inner membrane component
2580	 63.59	-1	2736523..2737401	+	292	119868637	-	Mkms_2602	-	binding-protein-dependent transport systems inner membrane component
2581	 68.73	0	2737401..2738516	+	371	119868638	-	Mkms_2603	-	ABC transporter related
2582	 68.17	0	2738513..2739640	+	375	119868639	-	Mkms_2604	-	ABC transporter related
2583	 71.88	+1	2739637..2741382	+	581	119868640	-	Mkms_2605	-	Glycerone kinase
2584	 66.67	0	2741379..2741858	+	159	119868641	-	Mkms_2606	-	ribose 5-phosphate isomerase
2585	 68.97	0	2741874..2742350	-	158	119868642	-	Mkms_2607	-	hypothetical protein
2586	 71.94	+1	2742627..2743460	+	277	119868643	-	Mkms_2608	-	hypothetical protein
2587	 65.73	0	2743543..2744400	-	285	119868644	-	Mkms_2609	-	binding-protein-dependent transport systems inner membrane component
2588	 62.90	-1	2744397..2745272	-	291	119868645	-	Mkms_2610	-	binding-protein-dependent transport systems inner membrane component
2589	 67.17	0	2745282..2746472	-	396	119868646	-	Mkms_2611	-	extracellular solute-binding protein
2590	 66.67	0	2746545..2747711	-	388	119868647	-	Mkms_2612	-	spermidine/putrescine ABC transporter ATPase subunit
2591	 64.81	-1	2748034..2748465	+	143	119868648	-	Mkms_2613	-	hypothetical protein
2592	 70.77	0	2748462..2749925	-	487	119868649	-	Mkms_2614	-	major facilitator superfamily transporter
2593	 68.33	0	2750038..2750517	+	159	119868650	-	Mkms_2615	-	TspO and MBR like proteins
2594	 65.53	0	2750575..2751102	+	175	119868651	-	Mkms_2616	-	hypothetical protein
2595	 70.18	0	2751106..2752188	-	360	119868652	-	Mkms_2617	-	3-isopropylmalate dehydrogenase
2596	 69.71	0	2752251..2753303	-	350	119868653	-	Mkms_2618	-	tartrate dehydrogenase
2597	 67.04	0	2753300..2754904	-	534	119868654	-	Mkms_2619	-	anion transporter
2598	 69.05	0	2755003..2755422	-	139	119868655	-	Mkms_2620	-	hypothetical protein
2599	 72.28	+1	2755547..2755813	-	88	119868656	-	Mkms_2621	-	hypothetical protein
2600	 66.19	0	2755908..2756324	-	138	119868657	-	Mkms_2622	-	hypothetical protein
2601	 67.08	0	2756350..2756832	-	160	119868658	-	Mkms_2623	-	MarR family transcriptional regulator
2602	 69.46	0	2756870..2757763	+	297	119868659	-	Mkms_2624	-	hypothetical protein
2603	 68.87	0	2757773..2758180	-	135	119868660	-	Mkms_2625	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2604	 72.17	+1	2758177..2759775	-	532	119868661	-	Mkms_2626	-	fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
2605	 71.54	0	2759759..2760496	-	245	119868662	-	Mkms_2627	-	ABC transporter related
2606	 67.13	0	2760493..2761362	-	289	119868663	-	Mkms_2628	-	binding-protein-dependent transport systems inner membrane component
2607	 67.29	0	2761359..2762318	-	319	119868664	-	Mkms_2629	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
2608	 66.19	0	2762500..2763126	+	208	119868665	-	Mkms_2630	-	uncharacterized peroxidase-related enzyme
2609	 68.78	0	2763131..2764027	-	298	119868666	-	Mkms_2631	-	6-phosphogluconate dehydrogenase, NAD-binding
2610	 68.42	0	2764558..2765526	+	322	119868667	-	Mkms_2633	-	putative integral membrane protein
2611	 61.90	-2	2765822..2766052	-	76	119868668	-	Mkms_2634	-	hypothetical protein
2612	 68.59	0	2766275..2767576	+	433	119868669	-	Mkms_2635	-	tryptophan synthase subunit beta
2613	 69.07	0	2767638..2768177	+	179	119868670	-	Mkms_2636	-	hypothetical protein
2614	 64.06	-1	2768671..2769015	+	114	119868671	-	Mkms_2637	-	Fis family transcriptional regulator
2615	 65.12	-1	2769093..2769932	+	279	119868672	-	Mkms_2638	-	integrase catalytic subunit
2616	 59.91	-2	2771423..2774086	-	887	119868673	-	Mkms_2640	-	hypothetical protein
2617	 58.75	-2	2774633..2774872	+	79	119868674	-	Mkms_2641	-	hypothetical protein
2618	 63.79	-1	2774948..2776405	-	485	119868675	-	Mkms_2642	-	Fis family transcriptional regulator
2619	 61.48	-2	2776383..2776748	-	121	119868676	-	Mkms_2643	-	hypothetical protein
2620	 59.80	-2	2776741..2777862	-	373	119868677	-	Mkms_2644	-	phage integrase family protein
2621	 55.81	-2	2778343..2778600	-	85	119868678	-	Mkms_2645	-	hypothetical protein
2622	 64.67	-1	2778857..2779408	+	183	119868679	-	Mkms_2646	-	YaeQ family protein
2623	 71.90	+1	2779620..2779829	+	69	119868680	-	Mkms_2647	-	hypothetical protein
2624	 64.00	-1	2780263..2780712	+	149	119868681	-	Mkms_2648	-	hypothetical protein
2625	 64.89	-1	2781188..2782366	+	392	119868682	-	Mkms_2649	-	acyl-CoA dehydrogenase type 2
2626	 65.22	-1	2782369..2783334	+	321	119868683	-	Mkms_2650	-	fumarylacetoacetate (FAA) hydrolase
2627	 67.55	0	2783340..2785256	+	638	119868684	-	Mkms_2651	-	acyl-CoA synthetase
2628	 64.88	-1	2785213..2785659	-	148	119868685	-	Mkms_2652	-	hypothetical protein
2629	 66.67	0	2785752..2786600	+	282	119868686	-	Mkms_2653	-	LysR family transcriptional regulator
2630	 66.99	0	2786692..2787315	+	207	119868687	-	Mkms_2654	-	TetR family transcriptional regulator
2631	 68.93	0	2787335..2787511	-	58	119868688	-	Mkms_2655	-	putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase
2632	 64.14	-1	2787521..2788390	-	289	119868689	-	Mkms_2656	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
2633	 65.27	-1	2788424..2789926	-	500	119868690	-	Mkms_2657	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
2634	 64.35	-1	2789923..2790873	-	316	119868691	-	Mkms_2658	-	dihydrodipicolinate synthase
2635	 67.25	0	2790870..2792399	-	509	119868692	-	Mkms_2659	-	hypothetical protein
2636	 64.62	-1	2792582..2793118	+	178	119868693	-	Mkms_2660	-	flavin reductase domain-containing protein
2637	 64.31	-1	2793293..2794651	+	452	119868694	-	Mkms_2661	-	4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit
2638	 63.67	-1	2794692..2796527	+	611	119868695	-	Mkms_2662	-	acyl-CoA dehydrogenase domain-containing protein
2639	 68.04	0	2797132..2798004	+	290	119868696	-	Mkms_2663	-	short-chain dehydrogenase/reductase SDR
2640	 64.38	-1	2798013..2798492	+	159	119868697	-	Mkms_2664	-	MerR family transcriptional regulator
2641	 65.41	0	2798595..2799392	+	265	119868698	-	Mkms_2665	-	dienelactone hydrolase
2642	 66.00	0	2799374..2800267	-	297	119868699	-	Mkms_2666	-	helix-turn-helix domain-containing protein
2643	 66.08	0	2800311..2801165	-	284	119868700	-	Mkms_2667	-	short-chain dehydrogenase/reductase SDR
2644	 67.91	0	2801240..2801800	-	186	119868701	-	Mkms_2668	-	TetR family transcriptional regulator
2645	 66.93	0	2801891..2802637	+	248	119868702	-	Mkms_2669	-	short-chain dehydrogenase/reductase SDR
2646	 67.97	0	2802650..2803342	-	230	119868703	-	Mkms_2670	-	helix-turn-helix, type 11 domain-containing protein
2647	 63.95	-1	2803364..2803768	-	134	119868704	-	Mkms_2671	-	hypothetical protein
2648	 65.96	0	2803971..2805665	+	564	119868705	-	Mkms_2672	-	glucose-methanol-choline oxidoreductase
2649	 67.41	0	2805758..2806567	+	269	119868706	-	Mkms_2673	-	hypothetical protein
2650	 70.63	0	2806783..2807160	-	125	119868707	-	Mkms_2674	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.