IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2467	 64.75	-1	2610327..2610692	+	121	119868524	-	Mkms_2489	-	thioredoxin
2468	 69.18	0	2610711..2611544	+	277	119868525	-	Mkms_2490	-	enoyl-CoA hydratase
2469	 69.55	0	2611679..2613307	+	542	119868526	-	Mkms_2491	-	ABC transporter related
2470	 61.69	-2	2613433..2613633	+	66	119868527	-	Mkms_2492	-	hypothetical protein
2471	 69.26	0	2613626..2614204	-	192	119868528	-	Mkms_2493	-	TetR family transcriptional regulator
2472	 65.57	0	2614229..2617057	-	942	119868529	-	Mkms_2494	-	aconitate hydratase
2473	 67.36	0	2617187..2617765	+	192	119868530	-	Mkms_2495	-	hypothetical protein
2474	 70.38	0	2617990..2619417	+	475	119868531	-	Mkms_2496	-	NLP/P60 protein
2475	 67.91	0	2619411..2620136	+	241	119868532	-	Mkms_2497	-	NLP/P60 protein
2476	 68.12	0	2620252..2621424	+	390	119868533	-	Mkms_2498	-	ATPase
2477	 71.31	0	2621421..2622368	+	315	119868534	-	Mkms_2499	-	hypothetical protein
2478	 67.96	0	2622399..2623406	+	335	119868535	-	Mkms_2500	-	hypothetical protein
2479	 67.97	0	2623462..2624226	+	254	119868536	-	Mkms_2501	-	3-oxoacyl-[acyl-carrier-protein] reductase
2480	 66.79	0	2624246..2625055	+	269	119868537	-	Mkms_2502	-	enoyl-(acyl carrier protein) reductase
2481	 69.64	0	2625069..2626109	+	346	119868538	hemH	Mkms_2503	-	ferrochelatase
2482	 68.39	0	2626185..2628677	+	830	119868539	-	Mkms_2504	-	FAD dependent oxidoreductase
2483	 68.85	0	2628681..2629826	+	381	119868540	solA	Mkms_2505	-	N-methyltryptophan oxidase
2484	 68.13	0	2629823..2630980	+	385	119868541	-	Mkms_2506	-	Rieske (2Fe-2S) domain-containing protein
2485	 69.62	0	2630984..2632474	+	496	119868542	-	Mkms_2507	-	betaine-aldehyde dehydrogenase
2486	 65.01	-1	2632494..2634059	+	521	119868543	-	Mkms_2508	-	amino acid permease-associated region
2487	 68.77	0	2634052..2635575	+	507	119868544	-	Mkms_2509	-	glucose-methanol-choline oxidoreductase
2488	 71.00	0	2635581..2637404	+	607	119868545	-	Mkms_2510	-	cyclic nucleotide-binding protein
2489	 70.60	0	2637415..2638203	+	262	119868546	-	Mkms_2511	-	regulatory proteins, IclR
2490	 65.62	0	2638307..2639650	+	447	119868547	-	Mkms_2512	-	hypothetical protein
2491	 70.19	0	2639832..2640653	+	273	119868548	-	Mkms_2513	-	hypothetical protein
2492	 59.41	-2	2640685..2641869	+	394	119868549	-	Mkms_2514	-	hypothetical protein
2493	 65.56	0	2641917..2644178	+	753	119868550	-	Mkms_2515	-	hypothetical protein
2494	 69.06	0	2644448..2645785	+	445	119868551	-	Mkms_2516	-	hypothetical protein
2495	 70.64	0	2646441..2647421	+	326	119868552	-	Mkms_2517	-	hypothetical protein
2496	 71.47	0	2647418..2648395	+	325	119868553	-	Mkms_2518	-	transcriptional regulator-like protein
2497	 63.75	-1	2648425..2648664	+	79	119868554	-	Mkms_2519	-	twin arginine-targeting protein translocase
2498	 66.35	0	2648742..2649692	+	316	119868555	-	Mkms_2520	-	Sec-independent protein translocase, TatC subunit
2499	 70.40	0	2649676..2652432	+	918	119868556	-	Mkms_2521	-	DEAD/DEAH box helicase domain-containing protein
2500	 67.55	0	2652475..2653263	+	262	119868557	-	Mkms_2522	-	hypothetical protein
2501	 70.98	0	2653260..2654210	-	316	119868558	-	Mkms_2523	-	5'-3' exonuclease
2502	 70.07	0	2654207..2655058	-	283	119868559	-	Mkms_2524	-	hypothetical protein
2503	 71.30	0	2655084..2656226	+	380	119868560	-	Mkms_2525	-	peptidase M24
2504	 69.01	0	2656223..2656648	-	141	119868561	-	Mkms_2526	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2505	 72.92	+1	2656683..2657465	+	260	119868562	-	Mkms_2527	-	short-chain dehydrogenase/reductase SDR
2506	 72.29	+1	2657480..2658652	+	390	119868563	-	Mkms_2528	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
2507	 71.18	0	2658649..2659401	+	250	119868564	-	Mkms_2529	-	precorrin-4 C11-methyltransferase
2508	 72.70	+1	2659401..2660129	+	242	119868565	-	Mkms_2530	-	cobalt-precorrin-6x reductase
2509	 69.07	0	2660110..2661189	-	359	119868566	-	Mkms_2531	-	aminoglycoside phosphotransferase
2510	 71.84	+1	2661227..2662714	-	495	119868567	-	Mkms_2532	-	cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase / precorrin-3 methyltransferase
2511	 73.52	+1	2662711..2663337	-	208	119868568	cobH	Mkms_2533	-	precorrin-8X methylmutase
2512	 74.87	+1	2663348..2664469	-	373	119868569	-	Mkms_2534	-	precorrin-3B synthase
2513	 68.98	0	2664659..2665090	+	143	119868570	-	Mkms_2535	-	cyclic nucleotide-binding protein
2514	 69.39	0	2665092..2666009	-	305	119868571	-	Mkms_2536	-	taurine dioxygenase
2515	 68.35	0	2666151..2666804	+	217	119868572	-	Mkms_2537	-	binding-protein-dependent transport systems inner membrane component
2516	 68.03	0	2666801..2667976	+	391	119868573	-	Mkms_2538	-	glycine betaine/L-proline ABC transporter, ATPase subunit
2517	 68.88	0	2667973..2668740	+	255	119868574	-	Mkms_2539	-	binding-protein-dependent transport systems inner membrane component
2518	 68.33	0	2668737..2669756	+	339	119868575	-	Mkms_2540	-	substrate-binding region of ABC-type glycine betaine transport system
2519	 70.31	0	2670044..2673640	+	1198	119868576	cobN	Mkms_2541	-	cobaltochelatase
2520	 66.41	0	2673663..2674046	+	127	119868577	-	Mkms_2542	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2521	 65.12	-1	2674048..2674434	+	128	119868578	-	Mkms_2543	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2522	 71.91	+1	2674431..2675117	-	228	119868579	-	Mkms_2544	-	dienelactone hydrolase
2523	 73.29	+1	2675194..2675661	+	155	119868580	fxsA	Mkms_2545	-	FxsA
2524	 74.20	+1	2675683..2677275	+	530	119868581	-	Mkms_2546	-	amidohydrolase 3
2525	 71.89	+1	2677268..2678989	+	573	119868582	-	Mkms_2547	-	apolipoprotein N-acyltransferase
2526	 68.30	0	2678986..2679783	+	265	119868583	-	Mkms_2548	-	dolichyl-phosphate beta-D-mannosyltransferase
2527	 66.37	0	2679791..2680129	-	112	119868584	-	Mkms_2549	-	hypothetical protein
2528	 72.85	+1	2680229..2680600	+	123	119868585	-	Mkms_2550	-	hypothetical protein
2529	 69.91	0	2680635..2682266	+	543	119868586	-	Mkms_2551	-	ATP-dependent DNA helicase RecQ
2530	 70.37	0	2682343..2683584	+	413	119868587	-	Mkms_2552	-	transcriptional regulator, CadC
2531	 67.92	0	2683647..2684366	+	239	119868588	-	Mkms_2553	-	hypothetical protein
2532	 67.45	0	2684481..2685119	+	212	119868589	-	Mkms_2554	-	hypothetical protein
2533	 72.67	+1	2685123..2685788	-	221	119868590	-	Mkms_2555	-	LppI
2534	 69.98	0	2685880..2687388	+	502	119868591	-	Mkms_2556	-	carboxylesterase, type B
2535	 70.36	0	2687450..2689453	+	667	119868592	-	Mkms_2557	-	aminoglycoside phosphotransferase
2536	 72.51	+1	2689518..2689859	+	113	119868593	-	Mkms_2558	-	hypothetical protein
2537	 62.91	-1	2689934..2690146	+	70	119868594	-	Mkms_2559	-	hypothetical protein
2538	 71.62	0	2690166..2691053	-	295	119868595	-	Mkms_2560	-	hypothetical protein
2539	 66.12	0	2691167..2691718	-	183	119868596	-	Mkms_2561	-	RDD domain-containing protein
2540	 71.01	0	2691821..2692786	-	321	119868597	-	Mkms_2562	-	DoxX family protein
2541	 70.12	0	2692837..2693328	-	163	119868598	-	Mkms_2563	-	hypothetical protein
2542	 72.82	+1	2693437..2694834	+	465	119868599	-	Mkms_2564	-	xylulokinase
2543	 68.64	0	2694956..2696173	+	405	119868600	-	Mkms_2565	-	acyl-CoA dehydrogenase domain-containing protein
2544	 69.72	0	2696177..2696830	-	217	119868601	-	Mkms_2566	-	GntR family transcriptional regulator
2545	 68.27	0	2697135..2698508	+	457	119868602	-	Mkms_2567	-	xenobiotic compound monooxygenase A subunit
2546	 73.66	+1	2698505..2699305	+	266	119868603	-	Mkms_2568	-	rhodanese domain-containing protein
2547	 66.31	0	2699302..2700141	+	279	119868604	-	Mkms_2569	-	binding-protein-dependent transport systems inner membrane component
2548	 68.12	0	2700170..2701135	+	321	119868605	-	Mkms_2570	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
2549	 69.70	0	2701132..2701890	+	252	119868606	-	Mkms_2571	-	ABC transporter related
2550	 68.57	0	2701899..2702528	-	209	119868607	-	Mkms_2572	-	hypothetical protein
2551	 70.48	0	2702618..2703430	+	270	119868608	-	Mkms_2573	-	hypothetical protein
2552	 70.31	0	2703452..2704933	+	493	119868609	-	Mkms_2574	-	carbohydrate kinase, FGGY
2553	 69.77	0	2705036..2706001	+	321	119868610	-	Mkms_2575	-	luciferase family protein
2554	 66.39	0	2706017..2707090	+	357	119868611	-	Mkms_2576	-	dihydrodipicolinate reductase
2555	 63.23	-1	2707113..2708306	+	397	119868612	-	Mkms_2577	-	cytochrome P450
2556	 65.74	0	2708346..2709641	-	431	119868613	-	Mkms_2578	-	virulence factor Mce family protein
2557	 61.90	-2	2709815..2711095	-	426	119868614	-	Mkms_2579	-	amidohydrolase 2
2558	 65.54	0	2711110..2712084	-	324	119868615	-	Mkms_2580	-	short-chain dehydrogenase/reductase SDR
2559	 63.48	-1	2712189..2712752	-	187	119868616	-	Mkms_2581	-	acyl-CoA dehydrogenases-like protein
2560	 68.71	0	2712807..2714522	+	571	119868617	-	Mkms_2582	-	von Willebrand factor, type A
2561	 66.43	0	2714664..2715515	+	283	119868618	-	Mkms_2583	-	ATPase
2562	 63.81	-1	2715599..2716717	+	372	119868619	-	Mkms_2584	-	hypothetical protein
2563	 62.09	-2	2716722..2717858	+	378	119868620	-	Mkms_2585	-	hypothetical protein
2564	 66.86	0	2717839..2718885	+	348	119868621	-	Mkms_2586	-	short-chain dehydrogenase/reductase SDR
2565	 64.60	-1	2718878..2720380	+	500	119868622	-	Mkms_2587	-	aldehyde dehydrogenase
2566	 64.12	-1	2720451..2721668	+	405	119868623	-	Mkms_2588	-	cytochrome P450
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.