IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2395	 65.41	0	2534721..2535038	+	105	119868452	-	Mkms_2416	-	MihF
2396	 69.51	0	2535049..2535645	+	198	119868453	gmk	Mkms_2417	-	guanylate kinase
2397	 68.21	0	2535704..2536027	+	107	119868454	-	Mkms_2418	-	DNA-directed RNA polymerase subunit omega
2398	 71.46	0	2536043..2537293	+	416	119868455	-	Mkms_2419	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2399	 68.98	0	2537435..2538643	+	402	119868456	-	Mkms_2420	-	S-adenosylmethionine synthetase
2400	 68.20	0	2538748..2540244	-	498	119868457	-	Mkms_2421	-	cyclohexanone monooxygenase
2401	 70.66	0	2540312..2540887	-	191	119868458	-	Mkms_2422	-	TetR family transcriptional regulator
2402	 71.83	+1	2540963..2541853	+	296	119868459	-	Mkms_2423	-	NAD-dependent epimerase/dehydratase
2403	 72.43	+1	2541835..2542737	-	300	119868460	-	Mkms_2424	-	alpha/beta hydrolase domain-containing protein
2404	 72.07	+1	2542760..2543518	+	252	119868461	-	Mkms_2425	-	YhhN family protein
2405	 70.02	0	2543630..2544880	+	416	119868462	-	Mkms_2426	-	acetamidase/formamidase
2406	 75.28	+2	2544932..2546929	+	665	119868463	-	Mkms_2427	-	primosome assembly protein PriA
2407	 70.02	0	2546957..2548777	+	606	119868464	-	Mkms_2428	-	hypothetical protein
2408	 69.46	0	2548771..2549307	+	178	119868465	-	Mkms_2429	-	LemA family protein
2409	 74.22	+1	2549327..2550253	+	308	119868466	fmt	Mkms_2430	-	methionyl-tRNA formyltransferase
2410	 74.78	+1	2550250..2551617	+	455	119868467	-	Mkms_2431	-	Fmu (Sun) domain-containing protein
2411	 69.63	0	2551623..2552297	+	224	119868468	-	Mkms_2432	-	ribulose-phosphate 3-epimerase
2412	 72.95	+1	2552297..2553298	+	333	119868469	-	Mkms_2433	-	riboflavin biosynthesis protein RibD
2413	 69.48	0	2553604..2555271	-	555	119868470	-	Mkms_2434	-	major facilitator superfamily transporter
2414	 67.79	0	2555271..2555981	-	236	119868471	-	Mkms_2435	-	hypothetical protein
2415	 68.14	0	2556065..2556676	+	203	119868472	-	Mkms_2436	-	riboflavin synthase subunit alpha
2416	 68.56	0	2556786..2558105	+	439	119868473	-	Mkms_2437	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
2417	 71.22	0	2558102..2558584	+	160	119868474	ribH	Mkms_2438	-	riboflavin synthase subunit beta
2418	 69.13	0	2558581..2559027	+	148	119868475	-	Mkms_2439	-	hypothetical protein
2419	 71.61	0	2559030..2559494	-	154	119868476	-	Mkms_2440	-	GCN5-related N-acetyltransferase
2420	 71.23	0	2559491..2561395	-	634	119868477	-	Mkms_2441	-	gamma-glutamyltransferase 1
2421	 68.54	0	2561565..2563595	+	676	119868478	uvrC	Mkms_2442	-	excinuclease ABC subunit C
2422	 68.63	0	2563592..2564509	+	305	119868479	-	Mkms_2443	-	hypothetical protein
2423	 71.07	0	2564535..2565557	+	340	119868480	-	Mkms_2444	-	protein of unknown function UPF0052 and CofD
2424	 72.39	+1	2565554..2566531	+	325	119868481	-	Mkms_2445	-	hypothetical protein
2425	 70.68	0	2566528..2567100	-	190	119868482	-	Mkms_2446	-	TetR family transcriptional regulator
2426	 71.02	0	2567125..2568318	+	397	119868483	-	Mkms_2447	-	major facilitator superfamily transporter
2427	 68.91	0	2569815..2570483	+	222	119868484	-	Mkms_2449	-	extracellular solute-binding protein
2428	 65.40	0	2570562..2571584	+	340	119868485	-	Mkms_2450	-	glyceraldehyde-3-phosphate dehydrogenase
2429	 68.46	0	2571621..2572844	+	407	119868486	pgk	Mkms_2451	-	phosphoglycerate kinase
2430	 68.58	0	2572848..2573633	+	261	119868487	tpiA	Mkms_2452	-	triosephosphate isomerase
2431	 62.82	-1	2573665..2573898	+	77	119868488	secG	Mkms_2453	-	preprotein translocase subunit SecG
2432	 68.00	0	2574171..2577011	+	946	119868489	-	Mkms_2454	-	phosphoenolpyruvate carboxylase
2433	 67.19	0	2577103..2577486	-	127	119868490	-	Mkms_2455	-	hypothetical protein
2434	 71.00	0	2577674..2578411	-	245	119868491	-	Mkms_2456	-	6-phosphogluconolactonase
2435	 71.05	0	2578408..2579319	-	303	119868492	-	Mkms_2457	-	OpcA protein
2436	 66.98	0	2579316..2580887	-	523	119868493	-	Mkms_2458	-	glucose-6-phosphate 1-dehydrogenase
2437	 67.38	0	2580895..2582013	-	372	119868494	-	Mkms_2459	-	transaldolase
2438	 67.91	0	2582041..2584134	-	697	119868495	-	Mkms_2460	-	transketolase
2439	 66.57	0	2584348..2585349	+	333	119868496	-	Mkms_2461	-	protoheme IX farnesyltransferase
2440	 69.14	0	2585368..2586420	-	350	119868497	-	Mkms_2462	-	ABC transporter related
2441	 67.65	0	2586440..2587255	-	271	119868498	-	Mkms_2463	-	binding-protein-dependent transport systems inner membrane component
2442	 66.55	0	2587255..2588115	-	286	119868499	-	Mkms_2464	-	binding-protein-dependent transport systems inner membrane component
2443	 68.77	0	2588150..2589481	-	443	119868500	-	Mkms_2465	-	extracellular solute-binding protein
2444	 70.33	0	2589540..2590331	-	263	119868501	-	Mkms_2466	-	short-chain dehydrogenase/reductase SDR
2445	 71.31	0	2590331..2591815	-	494	119868502	-	Mkms_2467	-	carbohydrate kinase, FGGY
2446	 67.77	0	2591970..2592785	+	271	119868503	-	Mkms_2468	-	photosystem I assembly BtpA
2447	 74.03	+1	2592797..2593543	+	248	119868504	-	Mkms_2469	-	inositol-phosphate phosphatase
2448	 70.66	0	2593544..2594320	-	258	119868505	-	Mkms_2470	-	DeoR family transcriptional regulator
2449	 70.74	0	2594409..2594825	-	138	119868506	-	Mkms_2471	-	hypothetical protein
2450	 70.26	0	2594842..2595816	-	324	119868507	-	Mkms_2472	-	alcohol dehydrogenase
2451	 71.53	0	2595841..2596785	+	314	119868508	-	Mkms_2473	-	hypothetical protein
2452	 71.62	0	2596663..2597691	-	342	119868509	-	Mkms_2474	-	cytochrome oxidase assembly
2453	 72.28	+1	2597743..2598312	-	189	119868510	-	Mkms_2475	-	TetR family transcriptional regulator
2454	 69.75	0	2598397..2599110	+	237	119868511	-	Mkms_2476	-	hypothetical protein
2455	 72.07	+1	2599003..2599779	-	258	119868512	-	Mkms_2477	-	multidrug ABC transporter inner membrane protein
2456	 70.42	0	2599776..2600708	-	310	119868513	-	Mkms_2478	-	ABC transporter related
2457	 70.86	0	2600705..2602444	-	579	119868514	-	Mkms_2479	-	hypothetical protein
2458	 71.55	0	2602568..2603284	+	238	119868515	-	Mkms_2480	-	transcriptional regulator
2459	 65.03	-1	2603281..2604744	+	487	119868516	-	Mkms_2481	-	FeS assembly protein SufB
2460	 68.18	0	2604776..2605966	+	396	119868517	-	Mkms_2482	-	FeS assembly protein SufD
2461	 66.04	0	2605963..2606754	+	263	119868518	-	Mkms_2483	-	FeS assembly ATPase SufC
2462	 69.14	0	2606769..2608022	+	417	119868519	-	Mkms_2484	-	SufS subfamily cysteine desulfurase
2463	 64.72	-1	2608026..2608487	+	153	119868520	-	Mkms_2485	-	NifU family SUF system FeS assembly protein
2464	 63.42	-1	2608516..2608854	+	112	119868521	-	Mkms_2486	-	hypothetical protein
2465	 72.19	+1	2608891..2609451	+	186	119868522	-	Mkms_2487	-	hypothetical protein
2466	 68.48	0	2609497..2610213	+	238	119868523	-	Mkms_2488	-	ankyrin
2467	 64.75	-1	2610327..2610692	+	121	119868524	-	Mkms_2489	-	thioredoxin
2468	 69.18	0	2610711..2611544	+	277	119868525	-	Mkms_2490	-	enoyl-CoA hydratase
2469	 69.55	0	2611679..2613307	+	542	119868526	-	Mkms_2491	-	ABC transporter related
2470	 61.69	-2	2613433..2613633	+	66	119868527	-	Mkms_2492	-	hypothetical protein
2471	 69.26	0	2613626..2614204	-	192	119868528	-	Mkms_2493	-	TetR family transcriptional regulator
2472	 65.57	0	2614229..2617057	-	942	119868529	-	Mkms_2494	-	aconitate hydratase
2473	 67.36	0	2617187..2617765	+	192	119868530	-	Mkms_2495	-	hypothetical protein
2474	 70.38	0	2617990..2619417	+	475	119868531	-	Mkms_2496	-	NLP/P60 protein
2475	 67.91	0	2619411..2620136	+	241	119868532	-	Mkms_2497	-	NLP/P60 protein
2476	 68.12	0	2620252..2621424	+	390	119868533	-	Mkms_2498	-	ATPase
2477	 71.31	0	2621421..2622368	+	315	119868534	-	Mkms_2499	-	hypothetical protein
2478	 67.96	0	2622399..2623406	+	335	119868535	-	Mkms_2500	-	hypothetical protein
2479	 67.97	0	2623462..2624226	+	254	119868536	-	Mkms_2501	-	3-oxoacyl-[acyl-carrier-protein] reductase
2480	 66.79	0	2624246..2625055	+	269	119868537	-	Mkms_2502	-	enoyl-(acyl carrier protein) reductase
2481	 69.64	0	2625069..2626109	+	346	119868538	hemH	Mkms_2503	-	ferrochelatase
2482	 68.39	0	2626185..2628677	+	830	119868539	-	Mkms_2504	-	FAD dependent oxidoreductase
2483	 68.85	0	2628681..2629826	+	381	119868540	solA	Mkms_2505	-	N-methyltryptophan oxidase
2484	 68.13	0	2629823..2630980	+	385	119868541	-	Mkms_2506	-	Rieske (2Fe-2S) domain-containing protein
2485	 69.62	0	2630984..2632474	+	496	119868542	-	Mkms_2507	-	betaine-aldehyde dehydrogenase
2486	 65.01	-1	2632494..2634059	+	521	119868543	-	Mkms_2508	-	amino acid permease-associated region
2487	 68.77	0	2634052..2635575	+	507	119868544	-	Mkms_2509	-	glucose-methanol-choline oxidoreductase
2488	 71.00	0	2635581..2637404	+	607	119868545	-	Mkms_2510	-	cyclic nucleotide-binding protein
2489	 70.60	0	2637415..2638203	+	262	119868546	-	Mkms_2511	-	regulatory proteins, IclR
2490	 65.62	0	2638307..2639650	+	447	119868547	-	Mkms_2512	-	hypothetical protein
2491	 70.19	0	2639832..2640653	+	273	119868548	-	Mkms_2513	-	hypothetical protein
2492	 59.41	-2	2640685..2641869	+	394	119868549	-	Mkms_2514	-	hypothetical protein
2493	 65.56	0	2641917..2644178	+	753	119868550	-	Mkms_2515	-	hypothetical protein
2494	 69.06	0	2644448..2645785	+	445	119868551	-	Mkms_2516	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.