IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2332	 67.66	0	2466493..2466993	-	166	119868389	-	Mkms_2353	-	hypothetical protein
2333	 73.99	+1	2467013..2467900	-	295	119868390	-	Mkms_2354	-	2-dehydropantoate 2-reductase
2334	 70.45	0	2467989..2469761	+	590	119868391	aspS	Mkms_2355	-	aspartyl-tRNA synthetase
2335	 69.00	0	2469762..2472680	-	972	119868392	-	Mkms_2356	-	hypothetical protein
2336	 73.33	+1	2472677..2473081	-	134	119868393	-	Mkms_2357	-	hypothetical protein
2337	 69.85	0	2473074..2474582	-	502	119868394	-	Mkms_2358	-	hypothetical protein
2338	 69.34	0	2474811..2475971	-	386	119868395	-	Mkms_2359	-	polyprenyl synthetase
2339	 64.86	-1	2475968..2476744	-	258	119868396	-	Mkms_2360	-	hypothetical protein
2340	 69.58	0	2476773..2481194	-	1473	119868397	-	Mkms_2361	-	adenylate/guanylate cyclase
2341	 66.67	0	2481316..2481744	+	142	119868398	-	Mkms_2362	-	hypothetical protein
2342	 67.86	0	2481856..2482275	+	139	119868399	-	Mkms_2363	-	hypothetical protein
2343	 68.86	0	2482336..2483520	-	394	119868400	-	Mkms_2364	-	acetyl-CoA acetyltransferases
2344	 70.44	0	2483610..2484086	+	158	119868401	-	Mkms_2365	-	HxlR family transcriptional regulator
2345	 70.78	0	2484116..2485039	+	307	119868402	-	Mkms_2366	-	hypothetical protein
2346	 70.69	0	2485101..2488427	+	1108	119868403	-	Mkms_2367	-	transglutaminase domain-containing protein
2347	 72.16	+1	2488427..2491084	+	885	119868404	-	Mkms_2368	-	hypothetical protein
2348	 68.63	0	2491081..2491998	+	305	119868405	-	Mkms_2369	-	transglutaminase domain-containing protein
2349	 65.92	0	2491998..2493074	+	358	119868406	-	Mkms_2370	-	hypothetical protein
2350	 72.36	+1	2493136..2493978	+	280	119868407	-	Mkms_2371	-	hypothetical protein
2351	 71.08	0	2493996..2495333	+	445	119868408	-	Mkms_2372	-	recombination factor protein RarA
2352	 67.21	0	2495411..2495779	+	122	119868409	-	Mkms_2373	-	ArsR family transcriptional regulator
2353	 66.47	0	2495776..2496273	+	165	119868410	-	Mkms_2374	-	activator of Hsp90 ATPase 1 family protein
2354	 70.36	0	2496640..2497560	+	306	119868411	-	Mkms_2375	-	chalcone/stilbene synthase domain-containing protein
2355	 66.49	0	2497568..2498122	+	184	119868412	-	Mkms_2376	-	isoprenylcysteine carboxyl methyltransferase
2356	 69.58	0	2498122..2500386	+	754	119868413	-	Mkms_2377	-	MMPL domain-containing protein
2357	 59.23	-2	2500817..2501233	+	138	119868414	-	Mkms_2378	-	hypothetical protein
2358	 69.01	0	2501392..2502159	+	255	119868415	-	Mkms_2379	-	hypothetical protein
2359	 66.77	0	2502165..2503172	+	335	119868416	-	Mkms_2380	-	cyclase/dehydrase
2360	 69.05	0	2503169..2503588	+	139	119868417	-	Mkms_2381	-	gas vesicle synthesis-like protein
2361	 67.42	0	2503585..2504379	+	264	119868418	-	Mkms_2382	-	gas vesicle synthesis GvpLGvpF
2362	 66.28	0	2504383..2504640	+	85	119868419	-	Mkms_2383	-	hypothetical protein
2363	 69.97	0	2504649..2504981	+	110	119868420	-	Mkms_2384	-	gas vesicle synthesis family protein
2364	 64.57	-1	2504978..2505358	+	126	119868421	-	Mkms_2385	-	gas vesicle protein GVPa
2365	 69.32	0	2505348..2506139	+	263	119868422	-	Mkms_2386	-	gas vesicle synthesis GvpLGvpF
2366	 64.62	-1	2506132..2506326	+	64	119868423	-	Mkms_2387	-	gas vesicle protein GVPa
2367	 65.98	0	2506323..2506613	+	96	119868424	-	Mkms_2388	-	gas vesicle K
2368	 70.40	0	2506618..2508225	-	535	119868425	-	Mkms_2389	-	acyl-CoA synthetase
2369	 66.02	0	2508350..2508658	-	102	119868426	-	Mkms_2390	-	putative transglycosylase associated protein
2370	 70.21	0	2508738..2509358	-	206	119868427	-	Mkms_2391	-	hypothetical protein
2371	 70.15	0	2509476..2509877	+	133	119868428	-	Mkms_2392	-	hypothetical protein
2372	 69.12	0	2509964..2512657	+	897	119868429	alaS	Mkms_2393	-	alanyl-tRNA synthetase
2373	 73.92	+1	2512662..2513171	+	169	119868430	-	Mkms_2394	-	Holliday junction resolvase-like protein
2374	 67.95	0	2513164..2514411	+	415	119868431	-	Mkms_2395	-	aminodeoxychorismate lyase
2375	 73.89	+1	2514401..2515231	+	276	119868432	aroE	Mkms_2396	-	shikimate 5-dehydrogenase
2376	 74.88	+1	2515256..2515657	+	133	119868433	-	Mkms_2397	-	peptidase A24A, prepilin type IV
2377	 72.12	+1	2515672..2516697	-	341	119868434	-	Mkms_2398	-	alcohol dehydrogenase
2378	 72.10	+1	2516785..2517999	+	404	119868435	-	Mkms_2399	-	chorismate synthase
2379	 73.73	+1	2517999..2518706	+	235	119868436	aroK	Mkms_2400	-	shikimate kinase
2380	 69.53	0	2518703..2519785	+	360	119868437	aroB	Mkms_2401	-	3-dehydroquinate synthase
2381	 69.41	0	2519782..2520219	+	145	119868438	-	Mkms_2402	-	3-dehydroquinate dehydratase
2382	 67.56	0	2520227..2520784	-	185	119868439	-	Mkms_2403	-	hypothetical protein
2383	 70.86	0	2520818..2521939	+	373	119868440	-	Mkms_2404	-	peptidase M24
2384	 66.13	0	2521967..2522530	+	187	119868441	-	Mkms_2405	-	elongation factor P
2385	 70.96	0	2522533..2523021	+	162	119868442	nusB	Mkms_2406	-	transcription antitermination protein NusB
2386	 68.99	0	2523035..2524237	-	400	119868443	-	Mkms_2407	-	monooxygenase, FAD-binding
2387	 68.49	0	2524273..2525478	-	401	119868444	-	Mkms_2408	-	beta-lactamase
2388	 69.27	0	2525592..2526167	+	191	119868445	-	Mkms_2409	-	pyrimidine regulatory protein PyrR
2389	 70.14	0	2526202..2527152	+	316	119868446	pyrB	Mkms_2410	-	aspartate carbamoyltransferase catalytic subunit
2390	 70.68	0	2527149..2528444	+	431	119868447	pyrC	Mkms_2411	-	dihydroorotase
2391	 68.46	0	2528441..2528941	+	166	119868448	-	Mkms_2412	-	putative export or membrane protein
2392	 68.81	0	2528938..2530101	+	387	119868449	-	Mkms_2413	-	carbamoyl phosphate synthase small subunit
2393	 68.28	0	2530101..2533439	+	1112	119868450	carB	Mkms_2414	-	carbamoyl phosphate synthase large subunit
2394	 74.11	+1	2533442..2534260	+	272	119868451	pyrF	Mkms_2415	-	orotidine 5'-phosphate decarboxylase
2395	 65.41	0	2534721..2535038	+	105	119868452	-	Mkms_2416	-	MihF
2396	 69.51	0	2535049..2535645	+	198	119868453	gmk	Mkms_2417	-	guanylate kinase
2397	 68.21	0	2535704..2536027	+	107	119868454	-	Mkms_2418	-	DNA-directed RNA polymerase subunit omega
2398	 71.46	0	2536043..2537293	+	416	119868455	-	Mkms_2419	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2399	 68.98	0	2537435..2538643	+	402	119868456	-	Mkms_2420	-	S-adenosylmethionine synthetase
2400	 68.20	0	2538748..2540244	-	498	119868457	-	Mkms_2421	-	cyclohexanone monooxygenase
2401	 70.66	0	2540312..2540887	-	191	119868458	-	Mkms_2422	-	TetR family transcriptional regulator
2402	 71.83	+1	2540963..2541853	+	296	119868459	-	Mkms_2423	-	NAD-dependent epimerase/dehydratase
2403	 72.43	+1	2541835..2542737	-	300	119868460	-	Mkms_2424	-	alpha/beta hydrolase domain-containing protein
2404	 72.07	+1	2542760..2543518	+	252	119868461	-	Mkms_2425	-	YhhN family protein
2405	 70.02	0	2543630..2544880	+	416	119868462	-	Mkms_2426	-	acetamidase/formamidase
2406	 75.28	+2	2544932..2546929	+	665	119868463	-	Mkms_2427	-	primosome assembly protein PriA
2407	 70.02	0	2546957..2548777	+	606	119868464	-	Mkms_2428	-	hypothetical protein
2408	 69.46	0	2548771..2549307	+	178	119868465	-	Mkms_2429	-	LemA family protein
2409	 74.22	+1	2549327..2550253	+	308	119868466	fmt	Mkms_2430	-	methionyl-tRNA formyltransferase
2410	 74.78	+1	2550250..2551617	+	455	119868467	-	Mkms_2431	-	Fmu (Sun) domain-containing protein
2411	 69.63	0	2551623..2552297	+	224	119868468	-	Mkms_2432	-	ribulose-phosphate 3-epimerase
2412	 72.95	+1	2552297..2553298	+	333	119868469	-	Mkms_2433	-	riboflavin biosynthesis protein RibD
2413	 69.48	0	2553604..2555271	-	555	119868470	-	Mkms_2434	-	major facilitator superfamily transporter
2414	 67.79	0	2555271..2555981	-	236	119868471	-	Mkms_2435	-	hypothetical protein
2415	 68.14	0	2556065..2556676	+	203	119868472	-	Mkms_2436	-	riboflavin synthase subunit alpha
2416	 68.56	0	2556786..2558105	+	439	119868473	-	Mkms_2437	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
2417	 71.22	0	2558102..2558584	+	160	119868474	ribH	Mkms_2438	-	riboflavin synthase subunit beta
2418	 69.13	0	2558581..2559027	+	148	119868475	-	Mkms_2439	-	hypothetical protein
2419	 71.61	0	2559030..2559494	-	154	119868476	-	Mkms_2440	-	GCN5-related N-acetyltransferase
2420	 71.23	0	2559491..2561395	-	634	119868477	-	Mkms_2441	-	gamma-glutamyltransferase 1
2421	 68.54	0	2561565..2563595	+	676	119868478	uvrC	Mkms_2442	-	excinuclease ABC subunit C
2422	 68.63	0	2563592..2564509	+	305	119868479	-	Mkms_2443	-	hypothetical protein
2423	 71.07	0	2564535..2565557	+	340	119868480	-	Mkms_2444	-	protein of unknown function UPF0052 and CofD
2424	 72.39	+1	2565554..2566531	+	325	119868481	-	Mkms_2445	-	hypothetical protein
2425	 70.68	0	2566528..2567100	-	190	119868482	-	Mkms_2446	-	TetR family transcriptional regulator
2426	 71.02	0	2567125..2568318	+	397	119868483	-	Mkms_2447	-	major facilitator superfamily transporter
2427	 68.91	0	2569815..2570483	+	222	119868484	-	Mkms_2449	-	extracellular solute-binding protein
2428	 65.40	0	2570562..2571584	+	340	119868485	-	Mkms_2450	-	glyceraldehyde-3-phosphate dehydrogenase
2429	 68.46	0	2571621..2572844	+	407	119868486	pgk	Mkms_2451	-	phosphoglycerate kinase
2430	 68.58	0	2572848..2573633	+	261	119868487	tpiA	Mkms_2452	-	triosephosphate isomerase
2431	 62.82	-1	2573665..2573898	+	77	119868488	secG	Mkms_2453	-	preprotein translocase subunit SecG
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.