IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2257	 64.44	-1	2387933..2388112	-	59	119868314	-	Mkms_2278	-	hypothetical protein
2258	 70.80	0	2388428..2388790	-	120	119868315	-	Mkms_2279	-	hypothetical protein
2259	 67.32	0	2388830..2389288	-	152	119868316	-	Mkms_2280	-	hypothetical protein
2260	 69.71	0	2389547..2391451	-	634	119868317	-	Mkms_2281	-	hypothetical protein
2261	 64.98	-1	2391601..2391897	-	98	119868318	-	Mkms_2282	-	hypothetical protein
2262	 65.93	0	2391894..2392298	-	134	119868319	-	Mkms_2283	-	hypothetical protein
2263	 65.22	-1	2392368..2393129	-	253	119868320	-	Mkms_2284	-	response regulator receiver/ANTAR domain-containing protein
2264	 69.29	0	2393144..2394247	+	367	119868321	-	Mkms_2285	-	hypothetical protein
2265	 73.18	+1	2394200..2394706	-	168	119868322	-	Mkms_2286	-	hypothetical protein
2266	 69.86	0	2394749..2395375	+	208	119868323	-	Mkms_2287	-	thioesterase superfamily protein
2267	 67.56	0	2395372..2395818	+	148	119868324	-	Mkms_2288	-	hypothetical protein
2268	 68.13	0	2395902..2397956	+	684	119868325	thrS	Mkms_2289	-	threonyl-tRNA synthetase
2269	 66.26	0	2397953..2398687	+	244	119868326	-	Mkms_2290	-	histidine triad (HIT) protein
2270	 70.55	0	2398684..2399352	+	222	119868327	-	Mkms_2291	-	CDP-diacylglycerol inositol 3-phosphatidyltransferase
2271	 71.21	0	2399349..2400272	+	307	119868328	-	Mkms_2292	-	lipid A biosynthesis lauroyl acyltransferase
2272	 70.13	0	2400275..2401399	+	374	119868329	-	Mkms_2293	-	phosphatidylinositol alpha-mannosyltransferase
2273	 73.27	+1	2401396..2402409	+	337	119868330	-	Mkms_2294	-	NUDIX hydrolase
2274	 67.60	0	2402422..2403390	+	322	119868331	-	Mkms_2295	-	pyridoxine biosynthesis protein
2275	 67.26	0	2403401..2404246	+	281	119868332	-	Mkms_2296	-	acyl-CoA thioesterase II
2276	 70.37	0	2404243..2404863	+	206	119868333	-	Mkms_2297	-	glutamine amidotransferase subunit PdxT
2277	 67.07	0	2404962..2405714	+	250	119868334	-	Mkms_2298	-	hypothetical protein
2278	 71.76	0	2405718..2406974	-	418	119868335	-	Mkms_2299	-	polyprenyl synthetase
2279	 67.15	0	2407036..2408496	+	486	119868336	-	Mkms_2300	-	amino acid permease-associated region
2280	 71.12	0	2408493..2409188	+	231	119868337	-	Mkms_2301	-	short-chain dehydrogenase/reductase SDR
2281	 71.88	+1	2409191..2409862	+	223	119868338	-	Mkms_2302	-	short-chain dehydrogenase/reductase SDR
2282	 68.44	0	2409875..2410834	+	319	119868339	-	Mkms_2303	-	agmatinase
2283	 68.36	0	2410831..2411718	+	295	119868340	-	Mkms_2304	-	polysaccharide deacetylase
2284	 67.42	0	2411731..2412789	+	352	119868341	-	Mkms_2305	-	Rieske (2Fe-2S) domain-containing protein
2285	 71.73	0	2412786..2413733	+	315	119868342	-	Mkms_2306	-	ferredoxin
2286	 70.54	0	2413765..2415003	+	412	119868343	-	Mkms_2307	-	purine catabolism PurC domain-containing protein
2287	 72.22	+1	2415141..2415392	-	83	119868344	-	Mkms_2308	-	hypothetical protein
2288	 67.86	0	2415435..2416688	+	417	119868345	-	Mkms_2309	-	formamidase
2289	 70.33	0	2416695..2417894	-	399	119868346	-	Mkms_2310	-	MscS mechanosensitive ion channel
2290	 68.10	0	2418066..2418692	+	208	119868347	-	Mkms_2311	-	hypothetical protein
2291	 68.21	0	2418746..2419327	+	193	119868348	ruvC	Mkms_2312	-	Holliday junction resolvase
2292	 70.73	0	2419324..2419914	+	196	119868349	ruvA	Mkms_2313	-	Holliday junction DNA helicase motor protein
2293	 71.79	0	2419916..2420989	+	357	119868350	ruvB	Mkms_2314	-	Holliday junction DNA helicase B
2294	 63.23	-1	2421005..2422399	-	464	119868351	-	Mkms_2315	-	fatty acid desaturase
2295	 64.08	-1	2422409..2423491	-	360	119868352	-	Mkms_2316	-	ferredoxin
2296	 70.49	0	2423750..2424376	+	208	119868353	-	Mkms_2317	-	hypothetical protein
2297	 69.02	0	2424377..2427901	-	1174	119868354	-	Mkms_2318	-	thioester reductase domain-containing protein
2298	 72.75	+1	2428092..2428913	+	273	119868355	-	Mkms_2319	-	hypothetical protein
2299	 68.62	0	2428980..2430413	-	477	119868356	-	Mkms_2320	-	gamma-aminobutyraldehyde dehydrogenase
2300	 69.28	0	2430431..2431771	-	446	119868357	-	Mkms_2321	-	4-aminobutyrate aminotransferase
2301	 65.25	-1	2432075..2432428	+	117	119868358	yajC	Mkms_2322	-	preprotein translocase subunit YajC
2302	 69.45	0	2432517..2434313	+	598	119868359	secD	Mkms_2323	-	preprotein translocase subunit SecD
2303	 68.34	0	2434317..2435570	+	417	119868360	secF	Mkms_2324	-	preprotein translocase subunit SecF
2304	 70.73	0	2435576..2437225	+	549	119868361	-	Mkms_2325	-	extracellular solute-binding protein
2305	 69.71	0	2437222..2437746	+	174	119868362	-	Mkms_2326	-	adenine phosphoribosyltransferase
2306	 68.12	0	2437802..2440207	+	801	119868363	-	Mkms_2327	-	(p)ppGpp synthetase I, SpoT/RelA
2307	 70.51	0	2440212..2441513	-	433	119868364	-	Mkms_2328	-	ErfK/YbiS/YcfS/YnhG family protein
2308	 70.40	0	2441601..2442563	-	320	119868365	-	Mkms_2329	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
2309	 70.34	0	2442563..2443570	-	335	119868366	-	Mkms_2330	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
2310	 69.51	0	2443573..2444241	+	222	119868367	-	Mkms_2331	-	beta-lactamase domain-containing protein
2311	 70.33	0	2444238..2445494	+	418	119868368	hisS	Mkms_2332	-	histidyl-tRNA synthetase
2312	 70.55	0	2445491..2446648	-	385	119868369	-	Mkms_2333	-	alcohol dehydrogenase
2313	 69.12	0	2446664..2447356	-	230	119868370	-	Mkms_2334	-	ABC transporter related
2314	 67.03	0	2447358..2448185	-	275	119868371	-	Mkms_2335	-	ABC transporter related
2315	 68.48	0	2448182..2449285	-	367	119868372	-	Mkms_2336	-	inner-membrane translocator
2316	 65.08	-1	2449282..2450166	-	294	119868373	-	Mkms_2337	-	inner-membrane translocator
2317	 65.01	-1	2450201..2451466	-	421	119868374	-	Mkms_2338	-	extracellular ligand-binding receptor
2318	 68.28	0	2451695..2452066	+	123	119868375	-	Mkms_2339	-	hypothetical protein
2319	 71.40	0	2452071..2453783	-	570	119868376	-	Mkms_2340	-	thiamine pyrophosphate binding domain-containing protein
2320	 71.92	+1	2453882..2454814	+	310	119868377	-	Mkms_2341	-	transcriptional regulator PadR family protein
2321	 56.86	-2	2455087..2455290	-	67	119868378	-	Mkms_2342	-	cold-shock DNA-binding protein family protein
2322	 69.98	0	2455419..2456444	+	341	119868379	-	Mkms_2343	-	radical SAM domain-containing protein
2323	 68.48	0	2456452..2457720	-	422	119868380	-	Mkms_2344	-	acyl-CoA dehydrogenase domain-containing protein
2324	 69.60	0	2457720..2458877	-	385	119868381	-	Mkms_2345	-	acyl-CoA dehydrogenase domain-containing protein
2325	 64.63	-1	2458874..2460103	-	409	119868382	-	Mkms_2346	-	amidohydrolase 2
2326	 68.74	0	2460180..2460806	-	208	119868383	-	Mkms_2347	-	TetR family transcriptional regulator
2327	 68.12	0	2460923..2461816	+	297	119868384	-	Mkms_2348	-	hypothetical protein
2328	 67.60	0	2461859..2462395	-	178	119868385	-	Mkms_2349	-	hypothetical protein
2329	 70.24	0	2462392..2464041	-	549	119868386	-	Mkms_2350	-	hypothetical protein
2330	 66.78	0	2464034..2464924	-	296	119868387	-	Mkms_2351	-	protein of unknown function, zinc metallopeptidase putative
2331	 72.81	+1	2465000..2466496	+	498	119868388	-	Mkms_2352	-	carboxylesterase, type B
2332	 67.66	0	2466493..2466993	-	166	119868389	-	Mkms_2353	-	hypothetical protein
2333	 73.99	+1	2467013..2467900	-	295	119868390	-	Mkms_2354	-	2-dehydropantoate 2-reductase
2334	 70.45	0	2467989..2469761	+	590	119868391	aspS	Mkms_2355	-	aspartyl-tRNA synthetase
2335	 69.00	0	2469762..2472680	-	972	119868392	-	Mkms_2356	-	hypothetical protein
2336	 73.33	+1	2472677..2473081	-	134	119868393	-	Mkms_2357	-	hypothetical protein
2337	 69.85	0	2473074..2474582	-	502	119868394	-	Mkms_2358	-	hypothetical protein
2338	 69.34	0	2474811..2475971	-	386	119868395	-	Mkms_2359	-	polyprenyl synthetase
2339	 64.86	-1	2475968..2476744	-	258	119868396	-	Mkms_2360	-	hypothetical protein
2340	 69.58	0	2476773..2481194	-	1473	119868397	-	Mkms_2361	-	adenylate/guanylate cyclase
2341	 66.67	0	2481316..2481744	+	142	119868398	-	Mkms_2362	-	hypothetical protein
2342	 67.86	0	2481856..2482275	+	139	119868399	-	Mkms_2363	-	hypothetical protein
2343	 68.86	0	2482336..2483520	-	394	119868400	-	Mkms_2364	-	acetyl-CoA acetyltransferases
2344	 70.44	0	2483610..2484086	+	158	119868401	-	Mkms_2365	-	HxlR family transcriptional regulator
2345	 70.78	0	2484116..2485039	+	307	119868402	-	Mkms_2366	-	hypothetical protein
2346	 70.69	0	2485101..2488427	+	1108	119868403	-	Mkms_2367	-	transglutaminase domain-containing protein
2347	 72.16	+1	2488427..2491084	+	885	119868404	-	Mkms_2368	-	hypothetical protein
2348	 68.63	0	2491081..2491998	+	305	119868405	-	Mkms_2369	-	transglutaminase domain-containing protein
2349	 65.92	0	2491998..2493074	+	358	119868406	-	Mkms_2370	-	hypothetical protein
2350	 72.36	+1	2493136..2493978	+	280	119868407	-	Mkms_2371	-	hypothetical protein
2351	 71.08	0	2493996..2495333	+	445	119868408	-	Mkms_2372	-	recombination factor protein RarA
2352	 67.21	0	2495411..2495779	+	122	119868409	-	Mkms_2373	-	ArsR family transcriptional regulator
2353	 66.47	0	2495776..2496273	+	165	119868410	-	Mkms_2374	-	activator of Hsp90 ATPase 1 family protein
2354	 70.36	0	2496640..2497560	+	306	119868411	-	Mkms_2375	-	chalcone/stilbene synthase domain-containing protein
2355	 66.49	0	2497568..2498122	+	184	119868412	-	Mkms_2376	-	isoprenylcysteine carboxyl methyltransferase
2356	 69.58	0	2498122..2500386	+	754	119868413	-	Mkms_2377	-	MMPL domain-containing protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.