IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
179	 67.40	0	194100..197381	-	1093	119866236	-	Mkms_0180	-	RND superfamily drug efflux protein
180	 70.10	0	197428..198126	-	232	119866237	-	Mkms_0181	-	hypothetical protein
181	 72.95	+1	198123..198950	-	275	119866238	trmB	Mkms_0182	-	tRNA (guanine-N(7))-methyltransferase
182	 75.07	+2	199045..200055	+	336	119866239	-	Mkms_0183	-	hypothetical protein
183	 73.16	+1	200052..201545	+	497	119866240	-	Mkms_0184	-	hypothetical protein
184	 66.56	0	201744..203573	+	609	119866241	-	Mkms_0185	-	phosphoenolpyruvate carboxykinase
185	 65.42	0	203721..205241	+	506	119866242	-	Mkms_0186	-	acyl-CoA synthetase
186	 71.23	0	205250..206125	+	291	119866243	-	Mkms_0187	-	enoyl-CoA hydratase/isomerase
187	 71.91	+1	206280..207023	-	247	119866244	-	Mkms_0188	-	short-chain dehydrogenase/reductase SDR
188	 71.16	0	207065..207931	+	288	119866245	-	Mkms_0189	-	helix-turn-helix domain-containing protein
189	 70.32	0	207985..208587	-	200	119866246	-	Mkms_0190	-	GntR family transcriptional regulator
190	 68.57	0	208732..209889	-	385	119866247	-	Mkms_0191	-	butyryl-CoA dehydrogenase
191	 70.20	0	209904..210950	+	348	119866248	-	Mkms_0192	-	hypothetical protein
192	 73.89	+1	211043..212149	+	368	119866249	-	Mkms_0193	-	hypothetical protein
193	 71.14	0	212143..213438	+	431	119866250	-	Mkms_0194	-	amidohydrolase 3
194	 67.52	0	213451..214386	-	311	119866251	-	Mkms_0195	-	Ion transport 2 domain-containing protein
195	 67.06	0	214433..216730	-	765	119866252	-	Mkms_0196	-	isocitrate lyase
196	 69.58	0	216866..217654	+	262	119866253	-	Mkms_0197	-	short-chain dehydrogenase/reductase SDR
197	 69.09	0	217651..218433	-	260	119866254	-	Mkms_0198	-	GntR family transcriptional regulator
198	 68.85	0	218514..219293	-	259	119866255	-	Mkms_0199	-	short chain dehydrogenase
199	 67.98	0	219329..220321	-	330	119866256	-	Mkms_0200	-	aminoglycoside phosphotransferase
200	 68.65	0	220321..220974	-	217	119866257	-	Mkms_0201	-	hypothetical protein
201	 69.50	0	221019..221300	-	93	119866258	-	Mkms_0202	-	microcompartments protein
202	 68.63	0	221324..221578	-	84	119866259	-	Mkms_0203	-	ethanolamine utilization protein EutN/carboxysome structural protein Ccml
203	 72.00	+1	221575..222099	-	174	119866260	-	Mkms_0204	-	hypothetical protein
204	 67.82	0	222096..222701	-	201	119866261	-	Mkms_0205	-	microcompartments protein
205	 71.04	0	222705..224282	-	525	119866262	-	Mkms_0206	-	aldehyde dehydrogenase
206	 65.73	0	224279..225556	-	425	119866263	-	Mkms_0207	-	aminotransferase
207	 64.32	-1	225707..227239	+	510	119866264	-	Mkms_0208	-	amino acid permease-associated region
208	 71.41	0	227236..228141	-	301	119866265	-	Mkms_0209	-	alpha/beta hydrolase domain-containing protein
209	 72.38	+1	228248..230416	-	722	119866266	-	Mkms_0210	-	acyl-CoA dehydrogenase domain-containing protein
210	 67.24	0	230579..231802	+	407	119866267	-	Mkms_0211	-	alpha/beta hydrolase domain-containing protein
211	 66.53	0	231829..233247	+	472	119866268	-	Mkms_0212	-	diacylglycerol O-acyltransferase
212	 69.16	0	233252..234496	-	414	119866269	-	Mkms_0213	-	LipO
213	 68.55	0	234669..235463	-	264	119866270	-	Mkms_0214	-	phospholipid/glycerol acyltransferase
214	 69.09	0	235545..235874	-	109	119866271	-	Mkms_0215	-	hypothetical protein
215	 66.98	0	236020..236970	+	316	119866272	-	Mkms_0216	-	pentapeptide repeat-containing protein
216	 72.97	+1	237001..237603	+	200	119866273	-	Mkms_0217	-	hypothetical protein
217	 71.14	0	237642..237887	+	81	119866274	-	Mkms_0218	-	hypothetical protein
218	 69.80	0	237891..238721	-	276	119866275	-	Mkms_0219	-	hypothetical protein
219	 71.28	0	238737..238931	-	64	119866276	-	Mkms_0220	-	hypothetical protein
220	 69.03	0	239057..239902	+	281	119866277	-	Mkms_0221	-	arylamine N-acetyltransferase
221	 72.01	+1	239921..240931	-	336	119866278	-	Mkms_0222	-	acyl-CoA dehydrogenase domain-containing protein
222	 71.48	0	240992..242218	-	408	119866279	-	Mkms_0223	-	acyl-CoA dehydrogenase domain-containing protein
223	 71.15	0	242229..243143	+	304	119866280	-	Mkms_0224	-	AraC family transcriptional regulator
224	 67.23	0	243145..243678	+	177	119866281	-	Mkms_0225	-	deaminase-reductase domain-containing protein
225	 68.16	0	244643..246118	-	491	119866282	-	Mkms_0227	-	aldehyde dehydrogenase
226	 71.28	0	246165..246923	-	252	119866283	-	Mkms_0228	-	methyltransferase type 11
227	 70.37	0	246960..248120	+	386	119866284	-	Mkms_0229	-	glycosyl transferase, group 1
228	 74.81	+1	248169..249764	-	531	119866285	-	Mkms_0230	-	hypothetical protein
229	 66.67	0	249812..251014	-	400	119866286	-	Mkms_0231	-	hypothetical protein
230	 71.50	0	251142..252320	+	392	119866287	-	Mkms_0232	-	acyltransferase 3
231	 70.46	0	252289..253764	-	491	119866288	-	Mkms_0233	-	AMP-dependent synthetase and ligase
232	 68.71	0	253766..254743	-	325	119866289	-	Mkms_0234	-	aryldialkylphosphatase
233	 69.85	0	254842..256443	+	533	119866290	-	Mkms_0235	-	protein of unknown function DUF894, DitE
234	 73.04	+1	256418..260572	-	1384	119866291	-	Mkms_0236	-	putative transmembrane protein
235	 67.24	0	260664..260837	-	57	119866292	-	Mkms_0237	-	small secreted protein
236	 71.29	0	260863..261381	-	172	119866293	-	Mkms_0238	-	UspA domain-containing protein
237	 73.55	+1	261442..262647	+	401	119866294	-	Mkms_0239	-	Beta-N-acetylhexosaminidase
238	 72.23	+1	262655..264109	-	484	119866295	-	Mkms_0240	-	Orn/Lys/Arg decarboxylase, major region
239	 69.98	0	264099..265274	-	391	119866296	-	Mkms_0241	-	amidohydrolase 2
240	 68.26	0	265345..266853	-	502	119866297	-	Mkms_0242	-	amino acid permease-associated region
241	 72.83	+1	266877..268190	-	437	119866298	-	Mkms_0243	-	glutamine synthetase, catalytic region
242	 71.45	0	268306..269100	+	264	119866299	-	Mkms_0244	-	glutamine amidotransferase, class-II
243	 72.92	+1	269113..269976	+	287	119866300	-	Mkms_0245	-	RpiR family transcriptional regulator
244	 66.51	0	270020..270676	+	218	119866301	-	Mkms_0246	-	TetR family transcriptional regulator
245	 70.71	0	270680..271768	-	362	119866302	-	Mkms_0247	-	hydroxyneurosporene-O-methyltransferase
246	 70.68	0	271774..272172	-	132	119866303	-	Mkms_0248	-	hypothetical protein
247	 67.38	0	272288..273133	-	281	119866304	-	Mkms_0249	-	dehydratase
248	 68.87	0	273135..274496	-	453	119866305	fabG	Mkms_0250	-	3-ketoacyl-(acyl-carrier-protein) reductase
249	 69.12	0	274607..275908	+	433	119866306	-	Mkms_0251	-	acetyl-CoA acetyltransferase
250	 66.99	0	276325..278160	-	611	119866307	-	Mkms_0252	-	acyl-CoA dehydrogenase domain-containing protein
251	 69.77	0	278569..279309	+	246	119866308	-	Mkms_0253	-	response regulator receiver/ANTAR domain-containing protein
252	 69.65	0	279328..290409	-	3693	119866309	-	Mkms_0254	-	beta-ketoacyl synthase
253	 62.38	-1	290603..292024	+	473	119866310	-	Mkms_0255	-	PapA3_1
254	 67.50	0	292051..295047	+	998	119866311	-	Mkms_0256	-	transport protein
255	 68.58	0	295047..296819	+	590	119866312	-	Mkms_0257	-	acyl-CoA synthetase
256	 69.40	0	296869..298002	+	377	119866313	-	Mkms_0258	-	hypothetical protein
257	 73.09	+1	298051..298719	-	222	119866314	-	Mkms_0259	-	hypothetical protein
258	 67.90	0	298821..299306	+	161	119866315	-	Mkms_0260	-	flavin reductase domain-containing protein
259	 68.52	0	299318..299479	-	53	119866316	-	Mkms_0261	-	hypothetical protein
260	 64.81	-1	299541..300293	-	250	119866317	-	Mkms_0262	-	fumarate reductase iron-sulfur subunit
261	 67.08	0	300290..302236	-	648	119866318	sdhA	Mkms_0263	-	succinate dehydrogenase flavoprotein subunit
262	 64.10	-1	302278..303096	-	272	119866319	-	Mkms_0264	-	putative succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase)
263	 63.59	-1	303194..303550	-	118	119866320	-	Mkms_0265	-	hypothetical protein
264	 71.67	0	303601..304359	+	252	119866321	-	Mkms_0266	-	hypothetical protein
265	 70.47	0	304456..304902	-	148	119866322	-	Mkms_0267	-	heat shock protein Hsp20
266	 68.67	0	305060..307702	+	880	119866323	-	Mkms_0268	-	nitrite reductase (NAD(P)H), large subunit
267	 70.70	0	307699..308070	+	123	119866324	-	Mkms_0269	-	nitrite reductase (NAD(P)H), small subunit
268	 70.35	0	308074..308643	-	189	119866325	-	Mkms_0270	-	hypothetical protein
269	 70.26	0	308716..309411	+	231	119866326	-	Mkms_0271	-	response regulator receiver/ANTAR domain-containing protein
270	 74.71	+1	309415..310110	-	231	119866327	-	Mkms_0272	-	cobalamin (vitamin B12) biosynthesis CbiX protein
271	 72.24	+1	310107..311255	-	382	119866328	-	Mkms_0273	-	bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein
272	 67.74	0	311388..312782	-	464	119866329	-	Mkms_0274	-	major facilitator transporter
273	 69.87	0	312878..313501	-	207	119866330	-	Mkms_0275	-	GCN5-related N-acetyltransferase
274	 69.00	0	313516..314457	-	313	119866331	-	Mkms_0276	-	alpha/beta hydrolase fold
275	 70.08	0	314465..315343	-	292	119866332	-	Mkms_0277	-	urea amidolyase related protein
276	 71.62	0	315382..316047	-	221	119866333	-	Mkms_0278	-	allophanate hydrolase subunit 1
277	 68.58	0	316122..316802	-	226	119866334	-	Mkms_0279	-	hypothetical protein
278	 70.70	0	316815..317780	-	321	119866335	-	Mkms_0280	-	periplasmic binding protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.