IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1875	 66.54	0	2009261..2010841	+	526	119867932	-	Mkms_1894	-	extracellular solute-binding protein
1876	 67.98	0	2010841..2011677	+	278	119867933	-	Mkms_1895	-	beta-lactamase domain-containing protein
1877	 71.40	0	2011674..2012222	+	182	119867934	-	Mkms_1896	-	hypothetical protein
1878	 68.20	0	2012219..2013259	+	346	119867935	-	Mkms_1897	-	2OG-Fe(II) oxygenase
1879	 72.98	+1	2013252..2014313	-	353	119867936	-	Mkms_1898	-	periplasmic binding protein
1880	 64.41	-1	2014521..2016251	+	576	119867937	-	Mkms_1899	-	cytochrome-c oxidase
1881	 70.18	0	2016289..2017542	+	417	119867938	-	Mkms_1900	-	phosphoserine phosphatase SerB
1882	 70.49	0	2017599..2019035	-	478	119867939	-	Mkms_1901	-	GntR family transcriptional regulator
1883	 72.83	+1	2019264..2019944	+	226	119867940	-	Mkms_1902	-	hypothetical protein
1884	 69.99	0	2019914..2020786	+	290	119867941	-	Mkms_1903	-	ABC transporter related
1885	 71.74	0	2020783..2021610	+	275	119867942	-	Mkms_1904	-	NUDIX hydrolase
1886	 70.81	0	2021615..2022265	+	216	119867943	-	Mkms_1905	-	enoyl-CoA hydratase
1887	 68.19	0	2022276..2023262	+	328	119867944	-	Mkms_1906	-	methyltransferase type 11
1888	 71.59	0	2023196..2024434	+	412	119867945	-	Mkms_1907	-	hypothetical protein
1889	 69.81	0	2024457..2025155	+	232	119867946	-	Mkms_1908	-	immunogenic protein MPB64/MPT64 precursor
1890	 66.93	0	2025152..2026690	-	512	119867947	-	Mkms_1909	-	amino acid carrier protein
1891	 71.88	+1	2026826..2028109	-	427	119867948	-	Mkms_1910	-	Pyrrolo-quinoline quinone
1892	 66.40	0	2028187..2028924	+	245	119867949	-	Mkms_1911	-	putative transferase
1893	 70.06	0	2030446..2031684	-	412	119867950	-	Mkms_1913	-	glycosyl transferase, group 1
1894	 72.73	+1	2031695..2033260	-	521	119867951	-	Mkms_1914	-	glycoside hydrolase family protein
1895	 68.97	0	2033257..2034036	-	259	119867952	-	Mkms_1915	-	methyltransferase type 11
1896	 66.67	0	2034243..2035043	+	266	119867953	-	Mkms_1916	-	electron transfer flavoprotein beta-subunit
1897	 69.59	0	2035084..2036040	+	318	119867954	-	Mkms_1917	-	electron transfer flavoprotein, alpha subunit
1898	 69.46	0	2036197..2037018	+	273	119867955	-	Mkms_1918	-	short-chain dehydrogenase/reductase SDR
1899	 72.18	+1	2037117..2037950	+	277	119867956	-	Mkms_1919	-	ornithine-acyl[acyl carrier protein] N-acyltransferase
1900	 73.95	+1	2037947..2038783	+	278	119867957	-	Mkms_1920	-	lyso-ornithine lipid acyltransferase
1901	 71.94	+1	2038831..2040024	+	397	119867958	-	Mkms_1921	-	aminotransferase, class V
1902	 71.48	0	2040024..2041103	+	359	119867959	trmU	Mkms_1922	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1903	 67.92	0	2041184..2041822	-	212	119867960	-	Mkms_1923	-	LpqA
1904	 74.38	+1	2041875..2042885	+	336	119867961	-	Mkms_1924	-	methionine synthase, vitamin-B12 independent
1905	 69.59	0	2042964..2044571	-	535	119867962	-	Mkms_1925	-	AMP-dependent synthetase and ligase
1906	 68.24	0	2044609..2044989	-	126	119867963	-	Mkms_1926	-	phosphoribosylglycinamide formyltransferase protein
1907	 70.47	0	2045051..2047156	+	701	119867964	ligA	Mkms_1927	-	NAD-dependent DNA ligase LigA
1908	 71.53	0	2047153..2048715	-	520	119867965	-	Mkms_1928	-	spermidine synthase
1909	 69.08	0	2048729..2049184	-	151	119867966	-	Mkms_1929	-	hypothetical protein
1910	 69.91	0	2049207..2049638	-	143	119867967	-	Mkms_1930	-	hypothetical protein
1911	 74.46	+1	2049635..2050147	-	170	119867968	-	Mkms_1931	-	hypothetical protein
1912	 69.88	0	2050156..2050746	-	196	119867969	-	Mkms_1932	-	hypothetical protein
1913	 67.87	0	2050857..2051438	-	193	119867970	-	Mkms_1933	-	hemerythrin HHE cation binding domain-containing protein
1914	 68.24	0	2051580..2051834	+	84	119867971	-	Mkms_1934	-	hypothetical protein
1915	 72.50	+1	2051838..2052506	-	222	119867972	-	Mkms_1935	-	amino acid-binding ACT domain-containing protein
1916	 69.28	0	2052595..2052900	+	101	119867973	gatC	Mkms_1936	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1917	 70.63	0	2052897..2054384	+	495	119867974	gatA	Mkms_1937	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1918	 68.70	0	2054473..2055504	+	343	119867975	-	Mkms_1938	-	6-phosphofructokinase
1919	 70.11	0	2055474..2056199	-	241	119867976	-	Mkms_1939	-	cutinase
1920	 68.19	0	2056374..2057879	+	501	119867977	gatB	Mkms_1940	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1921	 68.40	0	2057884..2059092	-	402	119867978	-	Mkms_1941	-	hypothetical protein
1922	 70.19	0	2059092..2059886	-	264	119867979	-	Mkms_1942	-	xylose isomerase domain-containing protein
1923	 68.12	0	2059890..2061059	-	389	119867980	-	Mkms_1943	-	hypothetical protein
1924	 70.49	0	2061056..2062231	-	391	119867981	-	Mkms_1944	-	luciferase family protein
1925	 71.54	0	2062320..2063099	+	259	119867982	-	Mkms_1945	-	enoyl-CoA hydratase/isomerase
1926	 65.98	0	2063112..2064413	+	433	119867983	-	Mkms_1946	-	acyl-CoA dehydrogenase domain-containing protein
1927	 70.63	0	2064416..2065399	-	327	119867984	-	Mkms_1947	-	aminoglycoside phosphotransferase
1928	 70.98	0	2065392..2066180	-	262	119867985	-	Mkms_1948	-	short-chain dehydrogenase/reductase SDR
1929	 70.83	0	2066280..2067455	-	391	119867986	-	Mkms_1949	-	LppZ
1930	 70.98	0	2067540..2068373	+	277	119867987	-	Mkms_1950	-	DoxX family protein
1931	 67.92	0	2068431..2068829	-	132	119867988	-	Mkms_1951	-	low molecular weight protein antigen 6 (CFP-6)
1932	 67.96	0	2069127..2070986	+	619	119867989	-	Mkms_1952	-	acetolactate synthase 1 catalytic subunit
1933	 64.74	-1	2071018..2071536	+	172	119867990	ilvH	Mkms_1953	-	acetolactate synthase 3 regulatory subunit
1934	 65.09	-1	2071572..2072585	+	337	119867991	-	Mkms_1954	-	ketol-acid reductoisomerase
1935	 72.90	+1	2072646..2074121	-	491	119867992	-	Mkms_1955	-	hypothetical protein
1936	 70.57	0	2074251..2075837	+	528	119867993	-	Mkms_1956	-	D-3-phosphoglycerate dehydrogenase
1937	 69.34	0	2075843..2076853	+	336	119867994	-	Mkms_1957	-	3-isopropylmalate dehydrogenase
1938	 71.57	0	2076854..2077465	+	203	119867995	-	Mkms_1958	-	hypothetical protein
1939	 69.76	0	2077416..2078645	-	409	119867996	-	Mkms_1959	-	amidohydrolase
1940	 68.18	0	2078675..2079004	-	109	119867997	-	Mkms_1960	-	antibiotic biosynthesis monooxygenase
1941	 71.99	+1	2079066..2079497	+	143	119867998	-	Mkms_1961	-	MarR family transcriptional regulator
1942	 71.11	0	2079499..2080737	-	412	119867999	-	Mkms_1962	-	major facilitator superfamily transporter
1943	 71.83	+1	2080776..2081975	+	399	119868000	-	Mkms_1963	-	secretory lipase
1944	 66.92	0	2081992..2082774	+	260	119868001	-	Mkms_1964	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
1945	 68.50	0	2082774..2084246	+	490	119868002	gltX	Mkms_1965	-	glutamyl-tRNA synthetase
1946	 75.36	+2	2084668..2085369	-	233	119868003	-	Mkms_1966	-	regulatory proteins, IclR
1947	 69.99	0	2085446..2086891	+	481	119868004	-	Mkms_1967	-	isopropylmalate isomerase large subunit
1948	 61.95	-2	2086905..2087498	+	197	119868005	leuD	Mkms_1968	-	isopropylmalate isomerase small subunit
1949	 68.14	0	2087702..2088379	+	225	119868006	-	Mkms_1969	-	nucleoid protein Hbs
1950	 69.66	0	2088437..2089372	-	311	119868007	-	Mkms_1970	-	NUDIX hydrolase
1951	 68.51	0	2089429..2091657	-	742	119868008	-	Mkms_1971	-	polyphosphate kinase
1952	 75.19	+2	2091654..2092310	-	218	119868009	-	Mkms_1972	-	hypothetical protein
1953	 71.47	0	2092386..2093384	+	332	119868010	gpsA	Mkms_1973	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1954	 72.19	+1	2093390..2094493	+	367	119868011	-	Mkms_1974	-	cystathionine gamma-lyase
1955	 70.97	0	2094540..2095655	+	371	119868012	ddl	Mkms_1975	-	D-alanyl-alanine synthetase A
1956	 73.22	+1	2095660..2096193	-	177	119868013	-	Mkms_1976	-	hypothetical protein
1957	 69.74	0	2096258..2096485	-	75	119868014	-	Mkms_1977	-	AsnC family transcriptional regulator
1958	 74.61	+1	2096600..2097556	+	318	119868015	-	Mkms_1978	-	thiamine monophosphate kinase
1959	 70.91	0	2097585..2098268	+	227	119868016	-	Mkms_1979	-	uracil-DNA glycosylase
1960	 67.18	0	2098695..2098889	-	64	119868017	rpmB	Mkms_1980	-	50S ribosomal protein L28
1961	 74.76	+1	2099113..2100756	+	547	119868018	-	Mkms_1981	-	Dak phosphatase
1962	 67.88	0	2100758..2102983	+	741	119868019	-	Mkms_1982	-	ATP-dependent DNA helicase RecG
1963	 70.18	0	2102980..2103690	+	236	119868020	-	Mkms_1983	-	hypothetical protein
1964	 67.72	0	2103761..2104612	-	283	119868021	-	Mkms_1984	-	2,5-didehydrogluconate reductase
1965	 63.66	-1	2104618..2105448	-	276	119868022	-	Mkms_1985	-	2,5-didehydrogluconate reductase
1966	 73.05	+1	2105447..2106574	+	375	119868023	-	Mkms_1986	-	alpha/beta hydrolase domain-containing protein
1967	 68.51	0	2106599..2107357	+	252	119868024	-	Mkms_1987	-	hypothetical protein
1968	 69.10	0	2107354..2108010	+	218	119868025	-	Mkms_1988	-	vitamin K epoxide reductase
1969	 69.67	0	2108045..2111440	+	1131	119868026	-	Mkms_1989	-	pyruvate carboxylase
1970	 73.30	+1	2111482..2112009	+	175	119868027	-	Mkms_1990	-	putative methyltransferase
1971	 65.62	0	2112042..2112518	+	158	119868028	coaD	Mkms_1991	-	phosphopantetheine adenylyltransferase
1972	 67.37	0	2112600..2113166	+	188	119868029	-	Mkms_1992	-	hemerythrin HHE cation binding domain-containing protein
1973	 69.51	0	2113313..2114050	+	245	119868030	-	Mkms_1993	-	hypothetical protein
1974	 69.65	0	2114107..2114676	+	189	119868031	-	Mkms_1994	-	hypothetical protein
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.