IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1775	 68.73	0	1900726..1901403	-	225	119867832	-	Mkms_1793	-	TetR family transcriptional regulator
1776	 70.69	0	1901797..1902666	+	289	119867833	-	Mkms_1794	-	hypothetical protein
1777	 67.72	0	1902628..1904433	-	601	119867834	-	Mkms_1795	-	diguanylate cyclase/phosphodiesterase
1778	 71.88	+1	1904457..1906586	-	709	119867835	-	Mkms_1796	-	hypothetical protein
1779	 66.13	0	1906586..1907335	-	249	119867836	-	Mkms_1797	-	hypothetical protein
1780	 64.90	-1	1908536..1908988	+	150	119867837	-	Mkms_1798	-	dehydratase
1781	 66.52	0	1909084..1910436	+	450	119867838	-	Mkms_1799	-	dimethylaniline monooxygenase (N-oxide-forming)
1782	 69.35	0	1910439..1911071	+	210	119867839	-	Mkms_1800	-	TetR family transcriptional regulator
1783	 71.44	0	1911068..1912009	+	313	119867840	-	Mkms_1801	-	alpha/beta hydrolase fold
1784	 69.35	0	1911996..1912814	-	272	119867841	-	Mkms_1802	-	short-chain dehydrogenase/reductase SDR
1785	 69.47	0	1912811..1913986	-	391	119867842	-	Mkms_1803	-	acyl-CoA dehydrogenase domain-containing protein
1786	 69.06	0	1914054..1914848	+	264	119867843	fabG	Mkms_1804	-	3-ketoacyl-(acyl-carrier-protein) reductase
1787	 70.45	0	1914848..1916062	+	404	119867844	-	Mkms_1805	-	acetyl-CoA acetyltransferase
1788	 65.41	0	1916059..1917252	+	397	119867845	-	Mkms_1806	-	acyl-CoA dehydrogenase domain-containing protein
1789	 70.55	0	1917254..1917922	+	222	119867846	-	Mkms_1807	-	GntR family transcriptional regulator
1790	 72.02	+1	1917973..1919541	-	522	119867847	-	Mkms_1808	-	AMP-dependent synthetase and ligase
1791	 70.84	0	1919528..1921084	-	518	119867848	-	Mkms_1809	-	AMP-dependent synthetase and ligase
1792	 73.14	+1	1921077..1922543	-	488	119867849	-	Mkms_1810	-	AMP-dependent synthetase and ligase
1793	 67.82	0	1922543..1923325	-	260	119867850	-	Mkms_1811	-	enoyl-CoA hydratase/isomerase
1794	 66.91	0	1923322..1924134	-	270	119867851	-	Mkms_1812	-	enoyl-CoA hydratase/isomerase
1795	 69.60	0	1924163..1924981	-	272	119867852	-	Mkms_1813	-	enoyl-CoA hydratase/isomerase
1796	 70.99	0	1925097..1925744	+	215	119867853	-	Mkms_1814	-	hypothetical protein
1797	 66.56	0	1925745..1926677	+	310	119867854	-	Mkms_1815	-	enoyl-CoA hydratase/isomerase
1798	 69.81	0	1926781..1927956	+	391	119867855	-	Mkms_1816	-	acetyl-CoA acetyltransferases
1799	 65.60	0	1927969..1928721	-	250	119867856	-	Mkms_1817	-	TetR family transcriptional regulator
1800	 67.20	0	1928966..1929709	+	247	119867857	-	Mkms_1818	-	enoyl-CoA hydratase
1801	 70.30	0	1929714..1930511	+	265	119867858	-	Mkms_1819	-	short-chain dehydrogenase/reductase SDR
1802	 67.38	0	1930615..1931460	+	281	119867859	-	Mkms_1820	-	enoyl-CoA hydratase
1803	 64.51	-1	1931457..1932662	+	401	119867860	-	Mkms_1821	-	amidohydrolase 2
1804	 68.02	0	1932664..1934292	+	542	119867861	-	Mkms_1822	-	acyl-CoA synthetase
1805	 64.63	-1	1934289..1935122	+	277	119867862	-	Mkms_1823	-	amidohydrolase 2
1806	 71.79	+1	1935122..1936174	+	350	119867863	-	Mkms_1824	-	acyl-CoA dehydrogenase domain-containing protein
1807	 68.26	0	1936175..1937368	+	397	119867864	-	Mkms_1825	-	acyl-CoA dehydrogenase domain-containing protein
1808	 67.28	0	1937595..1938740	-	381	119867865	-	Mkms_1826	-	thiolase
1809	 66.50	0	1938805..1940019	-	404	119867866	-	Mkms_1827	-	L-carnitine dehydratase/bile acid-inducible protein F
1810	 69.26	0	1940135..1941676	+	513	119867867	-	Mkms_1828	-	aldehyde dehydrogenase
1811	 66.27	0	1941673..1942929	-	418	119867868	-	Mkms_1829	-	cytochrome P450
1812	 70.27	0	1942979..1943200	+	73	119867869	-	Mkms_1830	-	hypothetical protein
1813	 69.77	0	1943213..1944469	+	418	119867870	-	Mkms_1831	-	aldehyde dehydrogenase
1814	 65.19	-1	1944478..1945695	+	405	119867871	-	Mkms_1832	-	cytochrome P450
1815	 70.36	0	1945698..1947347	-	549	119867872	-	Mkms_1833	-	acyl-CoA synthetase
1816	 69.71	0	1947347..1947970	-	207	119867873	-	Mkms_1834	-	isochorismatase hydrolase
1817	 65.37	0	1947967..1948965	-	332	119867874	-	Mkms_1835	-	Rieske (2Fe-2S) domain-containing protein
1818	 70.99	0	1949060..1950100	+	346	119867875	-	Mkms_1836	-	NAD-dependent epimerase/dehydratase
1819	 68.89	0	1950097..1951716	+	539	119867876	-	Mkms_1837	-	hypothetical protein
1820	 72.16	+1	1951713..1952822	+	369	119867877	-	Mkms_1838	-	hypothetical protein
1821	 62.40	-1	1952889..1953263	+	124	119867878	-	Mkms_1839	-	hypothetical protein
1822	 68.10	0	1953257..1954303	+	348	119867879	-	Mkms_1840	-	luciferase family protein
1823	 68.87	0	1954360..1955856	-	498	119867880	-	Mkms_1841	-	propionyl-CoA carboxylase
1824	 68.64	0	1955918..1956979	+	353	119867881	-	Mkms_1842	-	putative oxidoreductase
1825	 68.44	0	1956976..1958217	+	413	119867882	-	Mkms_1843	-	cytochrome P450
1826	 70.29	0	1958221..1958358	-	45	119867883	-	Mkms_1844	-	hypothetical protein
1827	 67.54	0	1958358..1960652	-	764	119867884	-	Mkms_1845	-	carbon starvation protein CstA
1828	 72.87	+1	1960743..1962305	-	520	119867885	ligB	Mkms_1846	-	ATP-dependent DNA ligase
1829	 73.33	+1	1962327..1962716	-	129	119867886	-	Mkms_1847	-	GatB/YqeY
1830	 71.93	+1	1962787..1964325	-	512	119867887	-	Mkms_1848	-	oxidoreductase, molybdopterin binding
1831	 69.96	0	1964426..1965184	+	252	119867888	-	Mkms_1849	-	short-chain dehydrogenase/reductase SDR
1832	 68.60	0	1965242..1965913	-	223	119867889	-	Mkms_1850	-	HxlR family transcriptional regulator
1833	 71.62	0	1966041..1966868	+	275	119867890	-	Mkms_1851	-	methyltransferase type 11
1834	 69.20	0	1966881..1967945	+	354	119867891	-	Mkms_1852	-	aminoglycoside phosphotransferase
1835	 72.90	+1	1967951..1968784	-	277	119867892	-	Mkms_1853	-	hypothetical protein
1836	 71.93	+1	1968903..1969415	+	170	119867893	-	Mkms_1854	-	hypothetical protein
1837	 65.86	0	1969425..1970918	-	497	119867894	-	Mkms_1855	-	cytochrome P450
1838	 68.87	0	1971038..1971673	+	211	119867895	-	Mkms_1856	-	TetR family transcriptional regulator
1839	 68.41	0	1971704..1972561	+	285	119867896	-	Mkms_1857	-	short chain dehydrogenase
1840	 71.78	0	1972569..1973741	-	390	119867897	-	Mkms_1858	-	hypothetical protein
1841	 70.41	0	1973751..1974818	-	355	119867898	-	Mkms_1859	-	DNA polymerase IV
1842	 73.30	+1	1974822..1975424	-	200	119867899	-	Mkms_1860	-	TetR family transcriptional regulator
1843	 68.96	0	1975520..1976086	+	188	119867900	-	Mkms_1861	-	NADPH-dependent FMN reductase
1844	 66.27	0	1976552..1976803	+	83	119867901	-	Mkms_1862	-	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit
1845	 63.40	-1	1976836..1977294	+	152	119867902	nrdI	Mkms_1863	-	ribonucleotide reductase stimulatory protein
1846	 61.05	-2	1977348..1979429	+	693	119867903	-	Mkms_1864	-	ribonucleotide-diphosphate reductase subunit alpha
1847	 69.46	0	1979437..1980690	-	417	119867904	-	Mkms_1865	-	putative transmembrane protein
1848	 68.04	0	1980746..1981108	-	120	119867905	-	Mkms_1866	-	hypothetical protein
1849	 72.97	+1	1981161..1981874	+	237	119867906	-	Mkms_1867	-	LysR family transcriptional regulator
1850	 71.30	0	1982547..1983344	-	265	119867907	-	Mkms_1869	-	short-chain dehydrogenase/reductase SDR
1851	 68.14	0	1983523..1985085	+	520	119867908	-	Mkms_1870	-	extracellular solute-binding protein
1852	 68.14	0	1985091..1985702	+	203	119867909	-	Mkms_1871	-	TetR family transcriptional regulator
1853	 69.40	0	1985738..1986835	+	365	119867910	-	Mkms_1872	-	agmatinase
1854	 66.58	0	1986910..1988091	-	393	119867911	-	Mkms_1873	-	geranylgeranyl reductase
1855	 67.07	0	1988234..1988974	+	246	119867912	-	Mkms_1874	-	TetR family transcriptional regulator
1856	 62.51	-1	1989112..1990074	+	320	119867913	nrdF	Mkms_1875	-	ribonucleotide-diphosphate reductase subunit beta
1857	 64.51	-1	1990161..1990670	+	169	119867914	-	Mkms_1876	-	hypothetical protein
1858	 68.48	0	1990774..1991103	+	109	119867915	-	Mkms_1877	-	hypothetical protein
1859	 64.71	-1	1991148..1991606	-	152	119867916	-	Mkms_1878	-	hypothetical protein
1860	 67.96	0	1991786..1993177	+	463	119867917	-	Mkms_1879	-	general substrate transporter
1861	 72.56	+1	1993188..1993628	-	146	119867918	-	Mkms_1880	-	hypothetical protein
1862	 66.94	0	1993670..1994029	-	119	119867919	-	Mkms_1881	-	hypothetical protein
1863	 68.44	0	1994302..1995261	+	319	119867920	-	Mkms_1882	-	putative esterase
1864	 67.81	0	1995332..1996384	-	350	119867921	-	Mkms_1883	-	alcohol dehydrogenase
1865	 68.75	0	1996497..1996832	-	111	119867922	-	Mkms_1884	-	YCII-related
1866	 71.97	+1	1996924..1997847	+	307	119867923	-	Mkms_1885	-	hypothetical protein
1867	 69.46	0	1997844..1998488	+	214	119867924	-	Mkms_1886	-	hypothetical protein
1868	 71.89	+1	1998485..2002102	+	1205	119867925	-	Mkms_1887	-	biotin carboxylation domain-containing protein
1869	 73.46	+1	2002099..2003835	+	578	119867926	-	Mkms_1888	-	amidase
1870	 70.04	0	2003814..2004494	-	226	119867927	-	Mkms_1889	-	TetR family transcriptional regulator
1871	 72.42	+1	2004737..2006734	+	665	119867928	-	Mkms_1890	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
1872	 71.28	0	2006734..2007600	+	288	119867929	-	Mkms_1891	-	binding-protein-dependent transport systems inner membrane component
1873	 68.36	0	2007609..2008613	+	334	119867930	-	Mkms_1892	-	binding-protein-dependent transport systems inner membrane component
1874	 67.90	0	2008614..2009264	+	216	119867931	-	Mkms_1893	-	isochorismatase hydrolase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.