IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1545	 66.67	0	1673680..1673982	+	100	119867602	-	Mkms_1555	-	hypothetical protein
1546	 66.67	0	1673989..1674489	+	166	119867603	-	Mkms_1556	-	hypothetical protein
1547	 67.75	0	1674555..1675382	-	275	119867604	-	Mkms_1557	-	short-chain dehydrogenase/reductase SDR
1548	 69.78	0	1675542..1676504	+	320	119867605	-	Mkms_1558	-	alpha/beta hydrolase domain-containing protein
1549	 64.84	-1	1676506..1676997	+	163	119867606	-	Mkms_1559	-	flavin reductase domain-containing protein
1550	 68.70	0	1677009..1677599	+	196	119867607	-	Mkms_1560	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1551	 66.84	0	1677596..1678780	-	394	119867608	-	Mkms_1561	-	TetR family transcriptional regulator
1552	 67.39	0	1678902..1679318	-	138	119867609	-	Mkms_1562	-	dehydratase
1553	 64.90	-1	1679315..1679767	-	150	119867610	-	Mkms_1563	-	hypothetical protein
1554	 67.76	0	1679764..1680951	-	395	119867611	-	Mkms_1564	-	lipid-transfer protein
1555	 69.26	0	1681170..1681940	-	256	119867612	-	Mkms_1565	-	short-chain dehydrogenase/reductase SDR
1556	 68.10	0	1682088..1682927	-	279	119867613	-	Mkms_1566	-	putative adenylate/guanylate cyclase
1557	 69.94	0	1682946..1684382	-	478	119867614	-	Mkms_1567	-	monooxygenase, FAD-binding
1558	 67.41	0	1684379..1684783	-	134	119867615	-	Mkms_1568	-	hypothetical protein
1559	 72.56	+1	1684955..1685938	+	327	119867616	-	Mkms_1569	-	methylenetetrahydrofolate reductase
1560	 71.30	0	1685935..1686690	+	251	119867617	-	Mkms_1570	-	methyltransferase type 11
1561	 74.14	+1	1686694..1688271	-	525	119867618	-	Mkms_1571	-	putative ABC transporter
1562	 72.06	+1	1688268..1690028	-	586	119867619	-	Mkms_1572	-	putative ABC transporter
1563	 66.17	0	1690071..1690670	+	199	119867620	-	Mkms_1573	-	hypothetical protein
1564	 68.34	0	1690645..1691181	-	178	119867621	-	Mkms_1574	-	TetR family transcriptional regulator
1565	 68.69	0	1691274..1692014	+	246	119867622	-	Mkms_1575	-	short-chain dehydrogenase/reductase SDR
1566	 71.15	0	1692155..1692622	+	155	119867623	-	Mkms_1576	-	hypothetical protein
1567	 69.26	0	1692627..1693628	-	333	119867624	-	Mkms_1577	-	alcohol dehydrogenase
1568	 72.94	+1	1693926..1694882	+	318	119867625	-	Mkms_1579	-	alpha/beta hydrolase fold
1569	 72.14	+1	1694893..1696245	-	450	119867626	-	Mkms_1580	-	amine oxidase (flavin-containing)
1570	 69.11	0	1696274..1697257	+	327	119867627	-	Mkms_1581	-	hypothetical protein
1571	 66.67	0	1697303..1698787	+	494	119867628	-	Mkms_1582	-	FAD dependent oxidoreductase
1572	 68.42	0	1698831..1699970	-	379	119867629	-	Mkms_1583	-	hypothetical protein
1573	 67.11	0	1699970..1701091	-	373	119867630	-	Mkms_1584	-	aminoglycoside phosphotransferase
1574	 69.49	0	1701136..1701738	+	200	119867631	-	Mkms_1585	-	TetR family transcriptional regulator
1575	 70.00	0	1701799..1702578	+	259	119867632	-	Mkms_1586	-	ABC transporter related
1576	 70.93	0	1702659..1703432	-	257	119867633	-	Mkms_1587	-	enoyl-CoA hydratase
1577	 69.90	0	1703442..1705016	-	524	119867634	-	Mkms_1588	-	NADH dehydrogenase subunit N
1578	 66.92	0	1705013..1706569	-	518	119867635	-	Mkms_1589	-	NADH dehydrogenase subunit M
1579	 69.26	0	1706563..1708491	-	642	119867636	-	Mkms_1590	-	NADH dehydrogenase subunit L
1580	 65.48	0	1708488..1709243	-	251	119867637	-	Mkms_1591	-	SPFH domain-containing protein/band 7 family protein
1581	 68.73	0	1709240..1709869	-	209	119867638	-	Mkms_1592	-	hypothetical protein
1582	 65.77	0	1709866..1712217	-	783	119867639	-	Mkms_1593	-	nitric-oxide reductase subunit B
1583	 64.00	-1	1712252..1712551	-	99	119867640	-	Mkms_1594	-	NADH dehydrogenase subunit K
1584	 66.93	0	1712548..1713297	-	249	119867641	-	Mkms_1595	-	NADH dehydrogenase subunit J
1585	 65.90	0	1713309..1713833	-	174	119867642	-	Mkms_1596	-	NADH dehydrogenase subunit I
1586	 67.79	0	1713826..1715076	-	416	119867643	-	Mkms_1597	-	NADH dehydrogenase subunit H
1587	 71.57	0	1715073..1717478	-	801	119867644	-	Mkms_1598	-	NADH dehydrogenase subunit G
1588	 68.64	0	1717584..1718900	-	438	119867645	-	Mkms_1599	-	NADH-quinone oxidoreductase, F subunit
1589	 72.54	+1	1718897..1719781	-	294	119867646	-	Mkms_1600	-	NADH dehydrogenase subunit E
1590	 66.96	0	1719789..1721129	-	446	119867647	-	Mkms_1601	-	NADH dehydrogenase subunit D
1591	 69.83	0	1721129..1721824	-	231	119867648	-	Mkms_1602	-	NADH dehydrogenase subunit C
1592	 63.80	-1	1722361..1722744	-	127	119867649	-	Mkms_1604	-	NADH dehydrogenase subunit A
1593	 68.89	0	1722912..1723316	-	134	119867650	-	Mkms_1605	-	response regulator receiver protein
1594	 67.16	0	1723383..1723784	-	133	119867651	-	Mkms_1606	-	hypothetical protein
1595	 72.35	+1	1723837..1724469	+	210	119867652	-	Mkms_1607	-	methyltransferase type 11
1596	 72.93	+1	1724477..1724827	-	116	119867653	-	Mkms_1608	-	hypothetical protein
1597	 71.04	0	1724824..1725783	-	319	119867654	-	Mkms_1609	-	aminoglycoside phosphotransferase
1598	 67.07	0	1725780..1727018	-	412	119867655	-	Mkms_1610	-	acyl-CoA dehydrogenase domain-containing protein
1599	 65.37	0	1727066..1727683	-	205	119867656	-	Mkms_1611	-	TetR family transcriptional regulator
1600	 71.41	0	1727692..1728597	-	301	119867657	-	Mkms_1612	-	hydroxymethylglutaryl-CoA lyase
1601	 69.33	0	1728594..1729793	-	399	119867658	-	Mkms_1613	-	Formyl-CoA transferase
1602	 67.00	0	1729793..1730983	-	396	119867659	-	Mkms_1614	-	hypothetical protein
1603	 67.75	0	1730980..1732086	-	368	119867660	-	Mkms_1615	-	homogentisate 1,2-dioxygenase
1604	 67.27	0	1732268..1732762	+	164	119867661	-	Mkms_1616	-	hypothetical protein
1605	 66.15	0	1732734..1733120	-	128	119867662	-	Mkms_1617	-	hypothetical protein
1606	 70.02	0	1733127..1734290	-	387	119867663	-	Mkms_1618	-	acyl-CoA dehydrogenase type 2
1607	 69.84	0	1734331..1734897	-	188	119867664	-	Mkms_1619	-	TetR family transcriptional regulator
1608	 65.55	0	1735190..1736176	+	328	119867665	-	Mkms_1620	-	putative esterase
1609	 70.37	0	1736196..1737194	-	332	119867666	-	Mkms_1621	-	alcohol dehydrogenase
1610	 64.37	-1	1737566..1738132	+	188	119867667	-	Mkms_1622	-	deaminase-reductase domain-containing protein
1611	 73.33	+1	1738181..1738705	+	174	119867668	-	Mkms_1623	-	hypothetical protein
1612	 71.04	0	1738829..1740223	+	464	119867669	-	Mkms_1624	-	PepSY-associated TM helix domain-containing protein
1613	 70.60	0	1740220..1740702	+	160	119867670	-	Mkms_1625	-	hypothetical protein
1614	 69.54	0	1740695..1741879	+	394	119867671	-	Mkms_1626	-	Dyp-type peroxidase family protein
1615	 66.42	0	1741884..1743098	-	404	119867672	-	Mkms_1627	-	acyl-CoA dehydrogenase domain-containing protein
1616	 70.30	0	1743118..1744521	-	467	119867673	-	Mkms_1628	-	acyl-CoA dehydrogenase domain-containing protein
1617	 69.17	0	1744689..1745486	-	265	119867674	-	Mkms_1629	-	histidinol-phosphate phosphatase
1618	 67.25	0	1745526..1745867	+	113	119867675	-	Mkms_1630	-	hypothetical protein
1619	 71.08	0	1745864..1747156	-	430	119867676	-	Mkms_1631	-	hypothetical protein
1620	 68.19	0	1747343..1748719	-	458	119867677	-	Mkms_1632	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1621	 66.76	0	1748903..1750018	+	371	119867678	prfB	Mkms_1633	-	peptide chain release factor 2
1622	 66.46	0	1750008..1750967	+	319	119867679	-	Mkms_1634	-	MscS mechanosensitive ion channel
1623	 71.60	0	1750964..1751449	+	161	119867680	-	Mkms_1635	-	hypothetical protein
1624	 64.64	-1	1751490..1752179	+	229	119867681	-	Mkms_1636	-	cell division ATP-binding protein FtsE
1625	 63.09	-1	1752180..1753073	+	297	119867682	-	Mkms_1637	-	cell division protein FtsX
1626	 67.46	0	1753077..1753583	+	168	119867683	smpB	Mkms_1638	-	SsrA-binding protein
1627	 70.27	0	1753676..1754425	+	249	119867684	-	Mkms_1639	-	hypothetical protein
1628	 68.97	0	1754483..1756828	+	781	119867685	-	Mkms_1640	-	diguanylate cyclase/phosphodiesterase
1629	 63.62	-1	1757380..1758330	+	316	119867686	-	Mkms_1641	-	hypothetical protein
1630	 64.57	-1	1758716..1759096	-	126	119867687	-	Mkms_1642	-	hypothetical protein
1631	 58.90	-2	1759169..1759606	+	145	119867688	-	Mkms_1643	-	putative PAS/PAC sensor protein
1632	 60.98	-2	1759787..1760278	+	163	119867689	-	Mkms_1644	-	two component LuxR family transcriptional regulator
1633	 56.35	-2	1761234..1761737	-	167	119867690	-	Mkms_1645	-	hypothetical protein
1634	 62.42	-1	1761734..1762627	-	297	119867691	-	Mkms_1646	-	IclR family transcriptional regulator
1635	 59.18	-2	1763095..1764549	+	484	119867692	-	Mkms_1647	-	ring hydroxylating dioxygenase, alpha subunit
1636	 61.81	-2	1764546..1765142	+	198	119867693	-	Mkms_1648	-	3-phenylpropionate dioxygenase subunit beta
1637	 63.73	-1	1765139..1765444	+	101	119867694	-	Mkms_1649	-	hypothetical protein
1638	 65.42	0	1765441..1766244	+	267	119867695	-	Mkms_1650	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
1639	 63.68	-1	1766305..1767711	+	468	119867696	-	Mkms_1651	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1640	 65.44	0	1768213..1769112	-	299	119867697	-	Mkms_1652	-	integrase catalytic subunit
1641	 67.27	0	1769109..1769441	-	110	119867698	-	Mkms_1653	-	transposase IS3/IS911 family protein
1642	 61.51	-2	1769605..1770690	+	361	119867699	-	Mkms_1654	-	cupin 2 domain-containing protein
1643	 65.07	-1	1770715..1771713	+	332	119867700	-	Mkms_1655	-	dihydrodipicolinate synthetase
1644	 61.28	-2	1771732..1772622	+	296	119867701	-	Mkms_1656	-	glyoxalase/bleomycin resistance protein/dioxygenase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.