IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.56   STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1492	 64.66	-1	1614864..1615562	+	232	119867549	-	Mkms_1501	-	DSBA oxidoreductase
1493	 67.23	0	1615743..1616450	-	235	119867550	-	Mkms_1502	-	TetR family transcriptional regulator
1494	 64.51	-1	1616599..1617477	+	292	119867551	-	Mkms_1503	-	phospholipid/glycerol acyltransferase
1495	 70.48	0	1617514..1618536	-	340	119867552	-	Mkms_1504	-	alcohol dehydrogenase
1496	 67.47	0	1618612..1621107	-	831	119867553	-	Mkms_1505	-	glycosyl transferase family protein
1497	 65.88	0	1621867..1622757	+	296	119867554	-	Mkms_1506	-	SPFH domain-containing protein/band 7 family protein
1498	 63.40	-1	1622996..1624249	+	417	119867555	-	Mkms_1507	-	cytochrome P450
1499	 62.14	-1	1624242..1624859	+	205	119867556	-	Mkms_1508	-	TetR family transcriptional regulator
1500	 64.06	-1	1624954..1625298	-	114	119867557	-	Mkms_1509	-	hypothetical protein
1501	 67.98	0	1625398..1625853	+	151	119867558	-	Mkms_1510	-	ArsR family transcriptional regulator
1502	 69.60	0	1625850..1626872	+	340	119867559	-	Mkms_1511	-	cation diffusion facilitator family transporter
1503	 68.09	0	1626869..1627501	-	210	119867560	-	Mkms_1512	-	TetR family transcriptional regulator
1504	 66.56	0	1627661..1628578	+	305	119867561	-	Mkms_1513	-	hypothetical protein
1505	 69.20	0	1628587..1628862	+	91	119867562	-	Mkms_1514	-	hypothetical protein
1506	 67.42	0	1628878..1629411	-	177	119867563	-	Mkms_1515	-	DoxX family protein
1507	 67.03	0	1629579..1631216	+	545	119867564	-	Mkms_1516	-	peptide chain release factor 3
1508	 64.61	-1	1631219..1631656	-	145	119867565	-	Mkms_1517	-	hypothetical protein
1509	 66.44	0	1631653..1632084	-	143	119867566	-	Mkms_1518	-	hypothetical protein
1510	 62.78	-1	1632181..1632360	-	59	119867567	-	Mkms_1519	-	hypothetical protein
1511	 69.93	0	1632423..1632851	-	142	119867568	-	Mkms_1520	-	hypothetical protein
1512	 68.03	0	1632978..1633712	+	244	119867569	-	Mkms_1521	-	TetR family transcriptional regulator
1513	 67.51	0	1633826..1634653	+	275	119867570	-	Mkms_1522	-	short-chain dehydrogenase/reductase SDR
1514	 69.11	0	1634660..1635517	+	285	119867571	-	Mkms_1523	-	enoyl-CoA hydratase
1515	 65.66	0	1635542..1636531	+	329	119867572	-	Mkms_1524	-	hypothetical protein
1516	 65.44	0	1636543..1638090	+	515	119867573	-	Mkms_1525	-	acyl-CoA synthetase
1517	 67.89	0	1638083..1639222	+	379	119867574	-	Mkms_1526	-	acyl-CoA dehydrogenase domain-containing protein
1518	 71.17	0	1639222..1639998	+	258	119867575	-	Mkms_1527	-	short-chain dehydrogenase/reductase SDR
1519	 68.80	0	1640028..1641104	+	358	119867576	-	Mkms_1528	-	aminoglycoside phosphotransferase
1520	 69.15	0	1641104..1641505	+	133	119867577	-	Mkms_1529	-	hypothetical protein
1521	 69.01	0	1641506..1642744	-	412	119867578	-	Mkms_1530	-	TetR family transcriptional regulator
1522	 65.69	0	1642975..1644822	+	615	119867579	-	Mkms_1531	-	acyl-CoA dehydrogenase domain-containing protein
1523	 62.50	-1	1645038..1645325	+	95	119867580	-	Mkms_1532	-	transposase IS3/IS911 family protein
1524	 64.71	-1	1645373..1646188	+	271	119867581	-	Mkms_1533	-	integrase catalytic subunit
1525	 64.81	-1	1646164..1647189	-	341	119867582	-	Mkms_1534	-	integrase catalytic subunit
1526	 68.04	0	1647261..1649372	-	703	119867583	-	Mkms_1535	-	CoA-binding domain-containing protein
1527	 66.56	0	1649504..1650400	+	298	119867584	-	Mkms_1536	-	alpha/beta hydrolase domain-containing protein
1528	 68.17	0	1650614..1651813	-	399	119867585	-	Mkms_1537	-	acyl-CoA dehydrogenase type 2
1529	 67.89	0	1651979..1653526	+	515	119867586	-	Mkms_1538	-	AMP-dependent synthetase and ligase
1530	 66.53	0	1653582..1655732	-	716	119867587	-	Mkms_1539	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
1531	 67.24	0	1655745..1656956	-	403	119867588	-	Mkms_1540	-	acetyl-CoA acetyltransferase
1532	 66.46	0	1656949..1658877	-	642	119867589	-	Mkms_1541	-	FAD dependent oxidoreductase
1533	 67.05	0	1658877..1659926	-	349	119867590	-	Mkms_1542	-	luciferase family protein
1534	 65.47	0	1660151..1661152	-	333	119867591	-	Mkms_1543	-	ferredoxin
1535	 64.79	-1	1661158..1662381	-	407	119867592	-	Mkms_1544	-	cytochrome P450
1536	 63.24	-1	1663205..1664020	+	271	119867593	-	Mkms_1545	-	hypothetical protein
1537	 66.20	0	1664017..1664871	+	284	119867594	-	Mkms_1546	-	hypothetical protein
1538	 67.02	0	1664876..1666297	+	473	119867595	-	Mkms_1547	-	virulence factor Mce family protein
1539	 67.73	0	1667339..1668655	+	438	119867596	-	Mkms_1549	-	virulence factor Mce family protein
1540	 65.10	-1	1668655..1669929	+	424	119867597	-	Mkms_1550	-	virulence factor Mce family protein
1541	 64.48	-1	1669932..1671074	+	380	119867598	-	Mkms_1551	-	virulence factor Mce family protein
1542	 66.88	0	1671076..1672515	+	479	119867599	-	Mkms_1552	-	virulence factor Mce family protein
1543	 66.27	0	1672527..1673027	+	166	119867600	-	Mkms_1553	-	hypothetical protein
1544	 66.83	0	1673024..1673641	+	205	119867601	-	Mkms_1554	-	hypothetical protein
1545	 66.67	0	1673680..1673982	+	100	119867602	-	Mkms_1555	-	hypothetical protein
1546	 66.67	0	1673989..1674489	+	166	119867603	-	Mkms_1556	-	hypothetical protein
1547	 67.75	0	1674555..1675382	-	275	119867604	-	Mkms_1557	-	short-chain dehydrogenase/reductase SDR
1548	 69.78	0	1675542..1676504	+	320	119867605	-	Mkms_1558	-	alpha/beta hydrolase domain-containing protein
1549	 64.84	-1	1676506..1676997	+	163	119867606	-	Mkms_1559	-	flavin reductase domain-containing protein
1550	 68.70	0	1677009..1677599	+	196	119867607	-	Mkms_1560	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1551	 66.84	0	1677596..1678780	-	394	119867608	-	Mkms_1561	-	TetR family transcriptional regulator
1552	 67.39	0	1678902..1679318	-	138	119867609	-	Mkms_1562	-	dehydratase
1553	 64.90	-1	1679315..1679767	-	150	119867610	-	Mkms_1563	-	hypothetical protein
1554	 67.76	0	1679764..1680951	-	395	119867611	-	Mkms_1564	-	lipid-transfer protein
1555	 69.26	0	1681170..1681940	-	256	119867612	-	Mkms_1565	-	short-chain dehydrogenase/reductase SDR
1556	 68.10	0	1682088..1682927	-	279	119867613	-	Mkms_1566	-	putative adenylate/guanylate cyclase
1557	 69.94	0	1682946..1684382	-	478	119867614	-	Mkms_1567	-	monooxygenase, FAD-binding
1558	 67.41	0	1684379..1684783	-	134	119867615	-	Mkms_1568	-	hypothetical protein
1559	 72.56	+1	1684955..1685938	+	327	119867616	-	Mkms_1569	-	methylenetetrahydrofolate reductase
1560	 71.30	0	1685935..1686690	+	251	119867617	-	Mkms_1570	-	methyltransferase type 11
1561	 74.14	+1	1686694..1688271	-	525	119867618	-	Mkms_1571	-	putative ABC transporter
1562	 72.06	+1	1688268..1690028	-	586	119867619	-	Mkms_1572	-	putative ABC transporter
1563	 66.17	0	1690071..1690670	+	199	119867620	-	Mkms_1573	-	hypothetical protein
1564	 68.34	0	1690645..1691181	-	178	119867621	-	Mkms_1574	-	TetR family transcriptional regulator
1565	 68.69	0	1691274..1692014	+	246	119867622	-	Mkms_1575	-	short-chain dehydrogenase/reductase SDR
1566	 71.15	0	1692155..1692622	+	155	119867623	-	Mkms_1576	-	hypothetical protein
1567	 69.26	0	1692627..1693628	-	333	119867624	-	Mkms_1577	-	alcohol dehydrogenase
1568	 72.94	+1	1693926..1694882	+	318	119867625	-	Mkms_1579	-	alpha/beta hydrolase fold
1569	 72.14	+1	1694893..1696245	-	450	119867626	-	Mkms_1580	-	amine oxidase (flavin-containing)
1570	 69.11	0	1696274..1697257	+	327	119867627	-	Mkms_1581	-	hypothetical protein
1571	 66.67	0	1697303..1698787	+	494	119867628	-	Mkms_1582	-	FAD dependent oxidoreductase
1572	 68.42	0	1698831..1699970	-	379	119867629	-	Mkms_1583	-	hypothetical protein
1573	 67.11	0	1699970..1701091	-	373	119867630	-	Mkms_1584	-	aminoglycoside phosphotransferase
1574	 69.49	0	1701136..1701738	+	200	119867631	-	Mkms_1585	-	TetR family transcriptional regulator
1575	 70.00	0	1701799..1702578	+	259	119867632	-	Mkms_1586	-	ABC transporter related
1576	 70.93	0	1702659..1703432	-	257	119867633	-	Mkms_1587	-	enoyl-CoA hydratase
1577	 69.90	0	1703442..1705016	-	524	119867634	-	Mkms_1588	-	NADH dehydrogenase subunit N
1578	 66.92	0	1705013..1706569	-	518	119867635	-	Mkms_1589	-	NADH dehydrogenase subunit M
1579	 69.26	0	1706563..1708491	-	642	119867636	-	Mkms_1590	-	NADH dehydrogenase subunit L
1580	 65.48	0	1708488..1709243	-	251	119867637	-	Mkms_1591	-	SPFH domain-containing protein/band 7 family protein
1581	 68.73	0	1709240..1709869	-	209	119867638	-	Mkms_1592	-	hypothetical protein
1582	 65.77	0	1709866..1712217	-	783	119867639	-	Mkms_1593	-	nitric-oxide reductase subunit B
1583	 64.00	-1	1712252..1712551	-	99	119867640	-	Mkms_1594	-	NADH dehydrogenase subunit K
1584	 66.93	0	1712548..1713297	-	249	119867641	-	Mkms_1595	-	NADH dehydrogenase subunit J
1585	 65.90	0	1713309..1713833	-	174	119867642	-	Mkms_1596	-	NADH dehydrogenase subunit I
1586	 67.79	0	1713826..1715076	-	416	119867643	-	Mkms_1597	-	NADH dehydrogenase subunit H
1587	 71.57	0	1715073..1717478	-	801	119867644	-	Mkms_1598	-	NADH dehydrogenase subunit G
1588	 68.64	0	1717584..1718900	-	438	119867645	-	Mkms_1599	-	NADH-quinone oxidoreductase, F subunit
1589	 72.54	+1	1718897..1719781	-	294	119867646	-	Mkms_1600	-	NADH dehydrogenase subunit E
1590	 66.96	0	1719789..1721129	-	446	119867647	-	Mkms_1601	-	NADH dehydrogenase subunit D
1591	 69.83	0	1721129..1721824	-	231	119867648	-	Mkms_1602	-	NADH dehydrogenase subunit C
68.56	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.