IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1452	 61.16	-2	1573327..1573689	+	120	119867509	-	Mkms_1459	-	CopY family transcriptional regulator
1453	 65.69	0	1573686..1574609	+	307	119867510	-	Mkms_1460	-	hypothetical protein
1454	 65.99	0	1574798..1575385	+	195	119867511	-	Mkms_1461	-	hypothetical protein
1455	 65.86	0	1575488..1576603	+	371	119867512	-	Mkms_1462	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
1456	 64.21	-1	1576600..1577859	+	419	119867513	-	Mkms_1463	-	major facilitator superfamily transporter
1457	 66.28	0	1577975..1578760	+	261	119867514	-	Mkms_1464	-	response regulator receiver protein
1458	 66.02	0	1578835..1579605	-	256	119867515	-	Mkms_1465	-	NLP/P60 protein
1459	 63.39	-1	1580119..1581339	-	406	119867516	-	Mkms_1466	-	ErfK/YbiS/YcfS/YnhG family protein
1460	 67.03	0	1581912..1582748	-	278	119867517	-	Mkms_1467	-	alpha/beta hydrolase fold
1461	 63.38	-1	1583018..1583230	+	70	119867518	-	Mkms_1468	-	heavy metal transport/detoxification protein
1462	 68.97	0	1583227..1584183	+	318	119867519	-	Mkms_1469	-	hypothetical protein
1463	 66.27	0	1584218..1586500	+	760	119867520	-	Mkms_1470	-	heavy metal translocating P-type ATPase
1464	 64.13	-1	1586519..1586794	+	91	119867521	-	Mkms_1471	-	YHS domain-containing protein
1465	 58.79	-2	1586873..1587202	+	109	119867522	-	Mkms_1472	-	hypothetical protein
1466	 60.48	-2	1587392..1587682	+	96	119867523	-	Mkms_1473	-	hypothetical protein
1467	 66.00	0	1587758..1588510	-	250	119867524	-	Mkms_1474	-	integrase catalytic subunit
1468	 61.90	-2	1588609..1588944	-	111	119867525	-	Mkms_1475	-	transposase IS3/IS911 family protein
1469	 62.72	-1	1589090..1589317	+	75	119867526	-	Mkms_1476	-	hypothetical protein
1470	 60.37	-2	1589353..1590099	+	248	119867527	-	Mkms_1477	-	hypothetical protein
1471	 61.69	-2	1590213..1590815	+	200	119867528	-	Mkms_1478	-	ABC transporter related
1472	 64.40	-1	1590812..1592314	+	500	119867529	-	Mkms_1479	-	putative ABC transporter membrane protein
1473	 61.03	-2	1592311..1592718	+	135	119867530	-	Mkms_1480	-	hypothetical protein
1474	 63.63	-1	1593047..1595353	+	768	119867531	-	Mkms_1481	-	heavy metal translocating P-type ATPase
1475	 64.06	-1	1595832..1596176	+	114	119867532	-	Mkms_1483	-	Fis family transcriptional regulator
1476	 65.12	-1	1596254..1597093	+	279	119867533	-	Mkms_1484	-	integrase catalytic subunit
1477	 58.52	-2	1597619..1597888	+	89	119867534	-	Mkms_1486	-	hypothetical protein
1478	 64.91	-1	1597934..1598788	-	284	119867535	-	Mkms_1487	-	hypothetical protein
1479	 66.43	0	1598972..1600219	-	415	119867536	-	Mkms_1488	-	transposase, mutator type
1480	 65.39	0	1600416..1602992	-	858	119867537	-	Mkms_1489	-	hypothetical protein
1481	 63.46	-1	1602989..1603987	-	332	119867538	-	Mkms_1490	-	ATPase central domain-containing protein
1482	 61.84	-2	1604146..1604829	-	227	119867539	-	Mkms_1491	-	DSBA oxidoreductase
1483	 67.71	0	1604854..1605237	+	127	119867540	-	Mkms_1492	-	ArsR family transcriptional regulator
1484	 69.15	0	1605230..1607401	+	723	119867541	-	Mkms_1493	-	heavy metal translocating P-type ATPase
1485	 69.32	0	1607423..1607761	+	112	119867542	-	Mkms_1494	-	hypothetical protein
1486	 63.88	-1	1607955..1608563	+	202	119867543	-	Mkms_1495	-	hypothetical protein
1487	 57.98	-2	1608938..1609789	-	283	119867544	-	Mkms_1496	-	TIR protein
1488	 70.08	0	1610763..1611671	-	302	119867545	-	Mkms_1497	-	LysR family transcriptional regulator
1489	 66.02	0	1611862..1612632	+	256	119867546	-	Mkms_1498	-	short-chain dehydrogenase/reductase SDR
1490	 60.50	-2	1613239..1613757	+	172	119867547	-	Mkms_1499	-	hypothetical protein
1491	 67.63	0	1613938..1614867	+	309	119867548	-	Mkms_1500	-	hypothetical protein
1492	 64.66	-1	1614864..1615562	+	232	119867549	-	Mkms_1501	-	DSBA oxidoreductase
1493	 67.23	0	1615743..1616450	-	235	119867550	-	Mkms_1502	-	TetR family transcriptional regulator
1494	 64.51	-1	1616599..1617477	+	292	119867551	-	Mkms_1503	-	phospholipid/glycerol acyltransferase
1495	 70.48	0	1617514..1618536	-	340	119867552	-	Mkms_1504	-	alcohol dehydrogenase
1496	 67.47	0	1618612..1621107	-	831	119867553	-	Mkms_1505	-	glycosyl transferase family protein
1497	 65.88	0	1621867..1622757	+	296	119867554	-	Mkms_1506	-	SPFH domain-containing protein/band 7 family protein
1498	 63.40	-1	1622996..1624249	+	417	119867555	-	Mkms_1507	-	cytochrome P450
1499	 62.14	-1	1624242..1624859	+	205	119867556	-	Mkms_1508	-	TetR family transcriptional regulator
1500	 64.06	-1	1624954..1625298	-	114	119867557	-	Mkms_1509	-	hypothetical protein
1501	 67.98	0	1625398..1625853	+	151	119867558	-	Mkms_1510	-	ArsR family transcriptional regulator
1502	 69.60	0	1625850..1626872	+	340	119867559	-	Mkms_1511	-	cation diffusion facilitator family transporter
1503	 68.09	0	1626869..1627501	-	210	119867560	-	Mkms_1512	-	TetR family transcriptional regulator
1504	 66.56	0	1627661..1628578	+	305	119867561	-	Mkms_1513	-	hypothetical protein
1505	 69.20	0	1628587..1628862	+	91	119867562	-	Mkms_1514	-	hypothetical protein
1506	 67.42	0	1628878..1629411	-	177	119867563	-	Mkms_1515	-	DoxX family protein
1507	 67.03	0	1629579..1631216	+	545	119867564	-	Mkms_1516	-	peptide chain release factor 3
1508	 64.61	-1	1631219..1631656	-	145	119867565	-	Mkms_1517	-	hypothetical protein
1509	 66.44	0	1631653..1632084	-	143	119867566	-	Mkms_1518	-	hypothetical protein
1510	 62.78	-1	1632181..1632360	-	59	119867567	-	Mkms_1519	-	hypothetical protein
1511	 69.93	0	1632423..1632851	-	142	119867568	-	Mkms_1520	-	hypothetical protein
1512	 68.03	0	1632978..1633712	+	244	119867569	-	Mkms_1521	-	TetR family transcriptional regulator
1513	 67.51	0	1633826..1634653	+	275	119867570	-	Mkms_1522	-	short-chain dehydrogenase/reductase SDR
1514	 69.11	0	1634660..1635517	+	285	119867571	-	Mkms_1523	-	enoyl-CoA hydratase
1515	 65.66	0	1635542..1636531	+	329	119867572	-	Mkms_1524	-	hypothetical protein
1516	 65.44	0	1636543..1638090	+	515	119867573	-	Mkms_1525	-	acyl-CoA synthetase
1517	 67.89	0	1638083..1639222	+	379	119867574	-	Mkms_1526	-	acyl-CoA dehydrogenase domain-containing protein
1518	 71.17	0	1639222..1639998	+	258	119867575	-	Mkms_1527	-	short-chain dehydrogenase/reductase SDR
1519	 68.80	0	1640028..1641104	+	358	119867576	-	Mkms_1528	-	aminoglycoside phosphotransferase
1520	 69.15	0	1641104..1641505	+	133	119867577	-	Mkms_1529	-	hypothetical protein
1521	 69.01	0	1641506..1642744	-	412	119867578	-	Mkms_1530	-	TetR family transcriptional regulator
1522	 65.69	0	1642975..1644822	+	615	119867579	-	Mkms_1531	-	acyl-CoA dehydrogenase domain-containing protein
1523	 62.50	-1	1645038..1645325	+	95	119867580	-	Mkms_1532	-	transposase IS3/IS911 family protein
1524	 64.71	-1	1645373..1646188	+	271	119867581	-	Mkms_1533	-	integrase catalytic subunit
1525	 64.81	-1	1646164..1647189	-	341	119867582	-	Mkms_1534	-	integrase catalytic subunit
1526	 68.04	0	1647261..1649372	-	703	119867583	-	Mkms_1535	-	CoA-binding domain-containing protein
1527	 66.56	0	1649504..1650400	+	298	119867584	-	Mkms_1536	-	alpha/beta hydrolase domain-containing protein
1528	 68.17	0	1650614..1651813	-	399	119867585	-	Mkms_1537	-	acyl-CoA dehydrogenase type 2
1529	 67.89	0	1651979..1653526	+	515	119867586	-	Mkms_1538	-	AMP-dependent synthetase and ligase
1530	 66.53	0	1653582..1655732	-	716	119867587	-	Mkms_1539	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
1531	 67.24	0	1655745..1656956	-	403	119867588	-	Mkms_1540	-	acetyl-CoA acetyltransferase
1532	 66.46	0	1656949..1658877	-	642	119867589	-	Mkms_1541	-	FAD dependent oxidoreductase
1533	 67.05	0	1658877..1659926	-	349	119867590	-	Mkms_1542	-	luciferase family protein
1534	 65.47	0	1660151..1661152	-	333	119867591	-	Mkms_1543	-	ferredoxin
1535	 64.79	-1	1661158..1662381	-	407	119867592	-	Mkms_1544	-	cytochrome P450
1536	 63.24	-1	1663205..1664020	+	271	119867593	-	Mkms_1545	-	hypothetical protein
1537	 66.20	0	1664017..1664871	+	284	119867594	-	Mkms_1546	-	hypothetical protein
1538	 67.02	0	1664876..1666297	+	473	119867595	-	Mkms_1547	-	virulence factor Mce family protein
1539	 67.73	0	1667339..1668655	+	438	119867596	-	Mkms_1549	-	virulence factor Mce family protein
1540	 65.10	-1	1668655..1669929	+	424	119867597	-	Mkms_1550	-	virulence factor Mce family protein
1541	 64.48	-1	1669932..1671074	+	380	119867598	-	Mkms_1551	-	virulence factor Mce family protein
1542	 66.88	0	1671076..1672515	+	479	119867599	-	Mkms_1552	-	virulence factor Mce family protein
1543	 66.27	0	1672527..1673027	+	166	119867600	-	Mkms_1553	-	hypothetical protein
1544	 66.83	0	1673024..1673641	+	205	119867601	-	Mkms_1554	-	hypothetical protein
1545	 66.67	0	1673680..1673982	+	100	119867602	-	Mkms_1555	-	hypothetical protein
1546	 66.67	0	1673989..1674489	+	166	119867603	-	Mkms_1556	-	hypothetical protein
1547	 67.75	0	1674555..1675382	-	275	119867604	-	Mkms_1557	-	short-chain dehydrogenase/reductase SDR
1548	 69.78	0	1675542..1676504	+	320	119867605	-	Mkms_1558	-	alpha/beta hydrolase domain-containing protein
1549	 64.84	-1	1676506..1676997	+	163	119867606	-	Mkms_1559	-	flavin reductase domain-containing protein
1550	 68.70	0	1677009..1677599	+	196	119867607	-	Mkms_1560	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1551	 66.84	0	1677596..1678780	-	394	119867608	-	Mkms_1561	-	TetR family transcriptional regulator
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.