IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1299	 69.60	0	1397868..1399676	-	602	119867356	-	Mkms_1306	-	carbamoyl-phosphate synthase L chain, ATP-binding
1300	 70.26	0	1399825..1400241	-	138	119867357	-	Mkms_1307	-	Fe-S metabolism associated SufE
1301	 68.00	0	1400238..1401134	-	298	119867358	-	Mkms_1308	-	rhodanese domain-containing protein
1302	 72.04	+1	1401178..1401810	-	210	119867359	-	Mkms_1309	-	Maf-like protein
1303	 68.82	0	1401807..1402085	-	92	119867360	-	Mkms_1310	-	hypothetical protein
1304	 66.91	0	1402110..1403780	-	556	119867361	-	Mkms_1311	-	carboxyl transferase
1305	 66.60	0	1404256..1405746	+	496	119867362	-	Mkms_1312	-	undecaprenyl-phosphate galactose phosphotransferase
1306	 64.55	-1	1405791..1406309	+	172	119867363	-	Mkms_1313	-	membrane-flanked domain-containing protein
1307	 65.36	0	1406264..1406953	-	229	119867364	-	Mkms_1314	-	GtrA family protein
1308	 71.57	0	1407114..1408295	+	393	119867365	-	Mkms_1315	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1309	 73.10	+1	1408292..1408804	+	170	119867366	-	Mkms_1316	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1310	 67.44	0	1408844..1410010	+	388	119867367	-	Mkms_1317	-	acyl-CoA dehydrogenase domain-containing protein
1311	 68.70	0	1410021..1411445	-	474	119867368	-	Mkms_1318	-	undecaprenyl-phosphate galactose phosphotransferase
1312	 68.39	0	1411438..1412775	-	445	119867369	-	Mkms_1319	-	hypothetical protein
1313	 67.17	0	1412776..1413573	-	265	119867370	-	Mkms_1320	-	glycosyl transferase family protein
1314	 72.69	+1	1414222..1415034	-	270	119867371	-	Mkms_1321	-	biotin--acetyl-CoA-carboxylase ligase
1315	 71.40	0	1415045..1416355	-	436	119867372	-	Mkms_1322	-	hypothetical protein
1316	 70.57	0	1416764..1417609	+	281	119867373	-	Mkms_1323	-	glycosyl transferase family protein
1317	 72.00	+1	1417606..1418937	+	443	119867374	-	Mkms_1324	-	polysaccharide biosynthesis protein
1318	 72.68	+1	1419134..1420513	+	459	119867375	-	Mkms_1325	-	hypothetical protein
1319	 67.78	0	1420510..1421859	+	449	119867376	-	Mkms_1326	-	hypothetical protein
1320	 70.05	0	1421848..1422912	-	354	119867377	-	Mkms_1327	-	glycosyl transferase, group 1
1321	 72.22	+1	1422909..1423970	-	353	119867378	-	Mkms_1328	-	glycosyl transferase, group 1
1322	 71.53	0	1423993..1425123	-	376	119867379	-	Mkms_1329	-	hypothetical protein
1323	 69.29	0	1425107..1426060	-	317	119867380	-	Mkms_1330	-	polysaccharide deacetylase
1324	 72.59	+1	1426057..1426917	-	286	119867381	-	Mkms_1331	-	hypothetical protein
1325	 70.88	0	1427027..1428190	+	387	119867382	-	Mkms_1332	-	UDP-N-acetylglucosamine 2-epimerase
1326	 64.83	-1	1428208..1428534	-	108	119867383	-	Mkms_1333	-	hypothetical protein
1327	 72.68	+1	1428678..1429409	-	243	119867384	-	Mkms_1334	-	hypothetical protein
1328	 68.77	0	1429397..1430869	-	490	119867385	-	Mkms_1335	-	cell envelope-related transcriptional attenuator
1329	 74.42	+1	1430949..1431812	+	287	119867386	-	Mkms_1336	-	dTDP-4-dehydrorhamnose reductase
1330	 69.25	0	1431860..1432750	+	296	119867387	-	Mkms_1337	-	glycosyl transferase family protein
1331	 70.19	0	1432750..1433829	+	359	119867388	-	Mkms_1338	-	nucleotidyl transferase
1332	 71.89	+1	1433811..1434365	-	184	119867389	-	Mkms_1339	-	NUDIX hydrolase
1333	 72.22	+1	1434362..1435729	-	455	119867390	-	Mkms_1340	-	F420-0--gamma-glutamyl ligase
1334	 69.78	0	1435726..1436721	-	331	119867391	-	Mkms_1341	-	LPPG:FO 2-phospho-L-lactate transferase
1335	 66.41	0	1437038..1437427	+	129	119867392	-	Mkms_1342	-	transcription factor WhiB
1336	 69.85	0	1437458..1437928	-	156	119867393	-	Mkms_1343	-	hypothetical protein
1337	 73.50	+1	1437969..1438436	+	155	119867394	-	Mkms_1344	-	hypothetical protein
1338	 69.81	0	1438510..1439907	+	465	119867395	manB	Mkms_1345	-	phosphomannomutase/phosphoglucomutase
1339	 73.72	+1	1439904..1440995	+	363	119867396	-	Mkms_1346	-	hypothetical protein
1340	 69.02	0	1441000..1442229	+	409	119867397	-	Mkms_1347	-	mannose-6-phosphate isomerase
1341	 68.18	0	1442239..1443627	-	462	119867398	-	Mkms_1348	-	hypothetical protein
1342	 66.73	0	1443704..1445176	+	490	119867399	-	Mkms_1349	-	amino acid permease-associated region
1343	 65.61	0	1445266..1446501	+	411	119867400	-	Mkms_1350	-	alkane 1-monooxygenase
1344	 68.52	0	1446498..1446659	+	53	119867401	-	Mkms_1351	-	rubredoxin-type Fe(Cys)4 protein
1345	 66.67	0	1446750..1446929	+	59	119867402	-	Mkms_1352	-	rubredoxin-type Fe(Cys)4 protein
1346	 68.35	0	1446980..1447633	+	217	119867403	-	Mkms_1353	-	TetR family transcriptional regulator
1347	 66.05	0	1447682..1449151	+	489	119867404	-	Mkms_1354	-	S-adenosyl-L-homocysteine hydrolase
1348	 69.58	0	1449260..1450528	+	422	119867405	-	Mkms_1355	-	amidohydrolase
1349	 66.90	0	1450626..1451927	+	433	119867406	-	Mkms_1356	-	triacylglycerol lipase
1350	 68.61	0	1452016..1452837	+	273	119867407	-	Mkms_1357	-	putative GAF sensor protein
1351	 69.86	0	1452903..1453934	+	343	119867408	-	Mkms_1358	-	TPR repeat-containing protein
1352	 63.41	-1	1453936..1454334	+	132	119867409	-	Mkms_1359	-	hypothetical protein
1353	 57.02	-2	1454769..1455110	-	113	119867410	-	Mkms_1360	-	hypothetical protein
1354	 66.22	0	1455110..1459765	-	1551	119867411	-	Mkms_1361	-	hypothetical protein
1355	 64.18	-1	1459756..1460037	-	93	119867412	-	Mkms_1362	-	hypothetical protein
1356	 73.82	+1	1460040..1460780	-	246	119867413	-	Mkms_1363	-	hypothetical protein
1357	 71.45	0	1460946..1461635	+	229	119867414	-	Mkms_1364	-	thymidylate kinase
1358	 64.48	-1	1461694..1462380	+	228	119867415	-	Mkms_1365	-	two component transcriptional regulator
1359	 69.18	0	1462457..1464124	+	555	119867416	-	Mkms_1366	-	integral membrane sensor signal transduction histidine kinase
1360	 70.98	0	1464121..1465884	+	587	119867417	-	Mkms_1367	-	lipoprotein LpqB
1361	 66.74	0	1465892..1467208	-	438	119867418	-	Mkms_1368	-	hypothetical protein
1362	 73.17	+1	1467291..1467905	+	204	119867419	-	Mkms_1369	-	hypothetical protein
1363	 66.67	0	1468205..1468885	+	226	119867420	-	Mkms_1370	-	sigma 54 modulation protein/ribosomal protein S30EA
1364	 66.67	0	1469044..1471887	+	947	119867421	-	Mkms_1371	-	preprotein translocase subunit SecA
1365	 75.24	+2	1471889..1472413	-	174	119867422	-	Mkms_1372	-	hypothetical protein
1366	 68.87	0	1472592..1473998	+	468	119867423	-	Mkms_1373	-	diacylglycerol O-acyltransferase
1367	 67.35	0	1474059..1475807	+	582	119867424	-	Mkms_1374	-	choline/carnitine/betaine transporter
1368	 70.66	0	1475821..1476321	+	166	119867425	-	Mkms_1375	-	hypothetical protein
1369	 68.79	0	1476361..1477491	+	376	119867426	-	Mkms_1376	-	ferredoxin
1370	 65.38	0	1477560..1478801	+	413	119867427	-	Mkms_1377	-	fatty acid desaturase
1371	 64.78	-1	1478873..1479721	-	282	119867428	-	Mkms_1378	-	2,5-didehydrogluconate reductase
1372	 70.85	0	1479864..1480844	-	326	119867429	-	Mkms_1379	-	GTPase EngC
1373	 73.20	+1	1480841..1482157	-	438	119867430	-	Mkms_1380	-	3-phosphoshikimate 1-carboxyvinyltransferase
1374	 68.41	0	1482194..1482994	+	266	119867431	-	Mkms_1381	-	hypothetical protein
1375	 71.85	+1	1482991..1484514	+	507	119867432	-	Mkms_1382	-	methyltransferase small
1376	 67.02	0	1484592..1485446	-	284	119867433	-	Mkms_1383	-	short chain dehydrogenase
1377	 72.26	+1	1485451..1486362	-	303	119867434	-	Mkms_1384	-	LysR family transcriptional regulator
1378	 72.11	+1	1486438..1487208	+	256	119867435	-	Mkms_1385	-	3-oxoadipate enol-lactonase
1379	 69.82	0	1487205..1487996	+	263	119867436	-	Mkms_1386	-	3-oxoacid CoA-transferase, A subunit
1380	 68.84	0	1487993..1488682	+	229	119867437	-	Mkms_1387	-	butyryl-CoA:acetate CoA transferase
1381	 71.73	0	1488628..1491273	-	881	119867438	-	Mkms_1388	-	LuxR family transcriptional regulator
1382	 70.14	0	1491283..1493928	-	881	119867439	-	Mkms_1389	-	oxidoreductase FAD-binding subunit
1383	 60.15	-2	1493940..1494461	-	173	119867440	-	Mkms_1390	-	2-chlorobenzoate 1,2-dioxygenase
1384	 66.09	0	1494464..1495852	-	462	119867441	-	Mkms_1391	-	Rieske (2Fe-2S) domain-containing protein
1385	 70.03	0	1496056..1496976	+	306	119867442	-	Mkms_1392	-	LysR family transcriptional regulator
1386	 69.29	0	1496973..1498076	+	367	119867443	-	Mkms_1393	-	mandelate racemase/muconate lactonizing protein
1387	 68.75	0	1498107..1498970	+	287	119867444	-	Mkms_1394	-	catechol 1,2-dioxygenase
1388	 62.37	-1	1498970..1499248	+	92	119867445	-	Mkms_1395	-	muconolactone delta-isomerase
1389	 70.74	0	1499241..1499756	-	171	119867446	-	Mkms_1396	-	ybaK/ebsC protein
1390	 66.39	0	1499852..1500565	+	237	119867447	-	Mkms_1397	-	ECF subfamily RNA polymerase sigma-24 factor
1391	 66.67	0	1500562..1500855	+	97	119867448	-	Mkms_1398	-	hypothetical protein
1392	 62.96	-1	1501196..1501411	+	71	119867449	-	Mkms_1399	-	putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1393	 69.55	0	1501440..1502930	+	496	119867450	-	Mkms_1400	-	signal transduction histidine kinase
1394	 68.24	0	1503083..1503337	-	84	119867451	-	Mkms_1401	-	transcription factor WhiB
1395	 71.20	0	1503583..1504530	-	315	119867452	-	Mkms_1402	-	diacylglycerol kinase, catalytic region
1396	 71.39	0	1504570..1504992	+	140	119867453	-	Mkms_1403	-	putative integral membrane protein
1397	 67.08	0	1504947..1505426	-	159	119867454	-	Mkms_1404	-	GCN5-related N-acetyltransferase
1398	 72.22	+1	1505423..1506520	-	365	119867455	-	Mkms_1405	-	isochorismate synthases
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.