IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1229	 63.84	-1	1323135..1323665	-	176	119867286	-	Mkms_1236	-	AsnC family transcriptional regulator
1230	 68.89	0	1323731..1325302	+	523	119867287	-	Mkms_1237	-	gamma-aminobutyraldehyde dehydrogenase
1231	 67.01	0	1325322..1325609	-	95	119867288	-	Mkms_1238	-	hypothetical protein
1232	 70.36	0	1325625..1326815	-	396	119867289	-	Mkms_1239	-	acyltransferase 3
1233	 71.97	+1	1326922..1327845	+	307	119867290	-	Mkms_1240	-	RNA polymerase sigma factor SigJ
1234	 67.01	0	1327805..1328383	-	192	119867291	-	Mkms_1241	-	putative transposase fusion protein
1235	 67.18	0	1328518..1328910	+	130	119867292	-	Mkms_1242	-	hypothetical protein
1236	 69.85	0	1329018..1330148	+	376	119867293	-	Mkms_1243	-	hypothetical protein
1237	 66.54	0	1330232..1331008	-	258	119867294	sdhB	Mkms_1244	-	succinate dehydrogenase iron-sulfur subunit
1238	 67.64	0	1331073..1332827	-	584	119867295	sdhA	Mkms_1245	-	succinate dehydrogenase flavoprotein subunit
1239	 65.21	-1	1332841..1333320	-	159	119867296	-	Mkms_1246	-	succinate dehydrogenase subunit D
1240	 63.40	-1	1333317..1333745	-	142	119867297	-	Mkms_1247	-	succinate dehydrogenase, cytochrome b subunit
1241	 66.91	0	1333976..1334392	+	138	119867298	-	Mkms_1248	-	cytidine deaminase
1242	 71.42	0	1334389..1335735	+	448	119867299	deoA	Mkms_1249	-	thymidine phosphorylase
1243	 68.69	0	1335772..1336860	+	362	119867300	-	Mkms_1250	-	adenosine deaminase
1244	 69.74	0	1336865..1338133	-	422	119867301	-	Mkms_1251	-	hypothetical protein
1245	 74.36	+1	1338144..1338455	-	103	119867302	-	Mkms_1252	-	hypothetical protein
1246	 67.39	0	1338569..1339531	+	320	119867303	-	Mkms_1253	-	putative adenylate/guanylate cyclase
1247	 70.17	0	1339528..1342611	+	1027	119867304	-	Mkms_1254	-	adenylate/guanylate cyclase
1248	 68.76	0	1342790..1345942	+	1050	119867305	-	Mkms_1255	-	adenylyl cyclase class-3/4/guanylyl cyclase
1249	 76.31	+2	1345949..1347037	-	362	119867306	-	Mkms_1256	-	NLP/P60 protein
1250	 71.63	0	1347384..1348007	+	207	119867307	upp	Mkms_1257	-	uracil phosphoribosyltransferase
1251	 70.82	0	1348011..1349648	-	545	119867308	-	Mkms_1258	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1252	 69.76	0	1349645..1350097	-	150	119867309	-	Mkms_1259	-	MarR family transcriptional regulator
1253	 72.62	+1	1350204..1351328	+	374	119867310	-	Mkms_1260	-	putative ammonia monooxygenase
1254	 74.34	+1	1351274..1352068	-	264	119867311	-	Mkms_1261	-	purine nucleoside phosphorylase
1255	 72.59	+1	1352125..1353306	+	393	119867312	-	Mkms_1262	-	amidohydrolase
1256	 71.01	0	1353303..1354475	+	390	119867313	-	Mkms_1263	-	amidohydrolase
1257	 70.61	0	1354483..1355751	-	422	119867314	-	Mkms_1264	-	hypothetical protein
1258	 70.42	0	1355809..1356288	-	159	119867315	-	Mkms_1265	-	hypothetical protein
1259	 69.92	0	1356359..1357771	+	470	119867316	-	Mkms_1266	-	flavoprotein disulfide reductase
1260	 69.43	0	1357819..1359558	+	579	119867317	-	Mkms_1267	-	FAD dependent oxidoreductase
1261	 70.37	0	1359555..1360418	+	287	119867318	-	Mkms_1268	-	pseudouridine synthase
1262	 70.10	0	1360426..1360833	+	135	119867319	-	Mkms_1269	-	hypothetical protein
1263	 69.91	0	1360855..1361625	+	256	119867320	-	Mkms_1270	-	short-chain dehydrogenase/reductase SDR
1264	 68.72	0	1361594..1362373	-	259	119867321	-	Mkms_1271	-	enoyl-CoA hydratase
1265	 65.45	0	1362551..1363540	+	329	119867322	-	Mkms_1272	-	integrase catalytic subunit
1266	 67.80	0	1363537..1363977	-	146	119867323	-	Mkms_1273	-	hypothetical protein
1267	 67.26	0	1363955..1364629	-	224	119867324	-	Mkms_1274	-	TetR family transcriptional regulator
1268	 72.28	+1	1364700..1365767	+	355	119867325	-	Mkms_1275	-	oxidoreductase FAD-binding subunit
1269	 64.50	-1	1365782..1366891	+	369	119867326	-	Mkms_1276	-	fatty acid desaturase
1270	 66.67	0	1366981..1367712	-	243	119867327	-	Mkms_1277	-	respiratory nitrate reductase, gamma subunit
1271	 71.10	0	1367714..1368367	-	217	119867328	-	Mkms_1278	-	respiratory nitrate reductase chaperone NarJ
1272	 66.97	0	1368364..1370019	-	551	119867329	-	Mkms_1279	-	respiratory nitrate reductase beta subunit
1273	 69.49	0	1370019..1373702	-	1227	119867330	-	Mkms_1280	-	respiratory nitrate reductase alpha subunit apoprotein
1274	 68.22	0	1373699..1374919	-	406	119867331	-	Mkms_1281	-	major facilitator superfamily transporter
1275	 69.12	0	1375069..1375842	-	257	119867332	-	Mkms_1282	-	DNA-formamidopyrimidine glycosylase
1276	 69.57	0	1375924..1376475	+	183	119867333	-	Mkms_1283	-	sulfatase family protein
1277	 71.39	0	1376496..1381067	-	1523	119867334	-	Mkms_1284	-	DEAD/DEAH box helicase domain-containing protein
1278	 73.36	+1	1381171..1381962	-	263	119867335	-	Mkms_1285	-	short-chain dehydrogenase/reductase SDR
1279	 71.35	0	1382103..1383383	+	426	119867336	-	Mkms_1286	-	glycosyl transferase family protein
1280	 69.81	0	1383334..1384923	-	529	119867337	-	Mkms_1287	-	delta-1-piperideine-6-carboxylate dehydrogenase
1281	 67.66	0	1384975..1385475	+	166	119867338	-	Mkms_1288	-	AsnC family transcriptional regulator
1282	 67.95	0	1385643..1386965	+	440	119867339	-	Mkms_1289	-	L-lysine aminotransferase
1283	 71.51	0	1386859..1387560	-	233	119867340	-	Mkms_1290	-	restriction endonuclease
1284	 72.08	+1	1387639..1387989	+	116	119867341	-	Mkms_1291	-	hypothetical protein
1285	 65.70	0	1388072..1388380	+	102	119867342	-	Mkms_1292	-	putative protein UsfY
1286	 65.82	0	1388442..1388678	-	78	119867343	-	Mkms_1293	-	CsbD family protein
1287	 66.67	0	1388743..1389600	-	285	119867344	-	Mkms_1294	-	short-chain dehydrogenase/reductase SDR
1288	 70.25	0	1389908..1391134	+	408	119867345	-	Mkms_1295	-	glycosyl transferase, group 1
1289	 67.35	0	1391227..1392246	-	339	119867346	-	Mkms_1296	-	hypothetical protein
1290	 64.44	-1	1392441..1392980	+	179	119867347	-	Mkms_1297	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1291	 67.55	0	1392977..1393768	+	263	119867348	-	Mkms_1298	-	RNA polymerase sigma factor SigF
1292	 69.01	0	1393739..1394164	-	141	119867349	-	Mkms_1299	-	anti-sigma-factor antagonist
1293	 73.44	+1	1394395..1394940	+	181	119867350	-	Mkms_1300	-	hypothetical protein
1294	 67.27	0	1394975..1395304	-	109	119867351	-	Mkms_1301	-	hypothetical protein
1295	 72.53	+1	1395465..1395788	-	107	119867352	-	Mkms_1302	-	hypothetical protein
1296	 67.03	0	1395920..1396744	+	274	119867353	-	Mkms_1303	-	chloride peroxidase
1297	 72.56	+1	1396748..1397137	-	129	119867354	-	Mkms_1304	-	hypothetical protein
1298	 67.08	0	1397360..1397599	+	79	119867355	-	Mkms_1305	-	hypothetical protein
1299	 69.60	0	1397868..1399676	-	602	119867356	-	Mkms_1306	-	carbamoyl-phosphate synthase L chain, ATP-binding
1300	 70.26	0	1399825..1400241	-	138	119867357	-	Mkms_1307	-	Fe-S metabolism associated SufE
1301	 68.00	0	1400238..1401134	-	298	119867358	-	Mkms_1308	-	rhodanese domain-containing protein
1302	 72.04	+1	1401178..1401810	-	210	119867359	-	Mkms_1309	-	Maf-like protein
1303	 68.82	0	1401807..1402085	-	92	119867360	-	Mkms_1310	-	hypothetical protein
1304	 66.91	0	1402110..1403780	-	556	119867361	-	Mkms_1311	-	carboxyl transferase
1305	 66.60	0	1404256..1405746	+	496	119867362	-	Mkms_1312	-	undecaprenyl-phosphate galactose phosphotransferase
1306	 64.55	-1	1405791..1406309	+	172	119867363	-	Mkms_1313	-	membrane-flanked domain-containing protein
1307	 65.36	0	1406264..1406953	-	229	119867364	-	Mkms_1314	-	GtrA family protein
1308	 71.57	0	1407114..1408295	+	393	119867365	-	Mkms_1315	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1309	 73.10	+1	1408292..1408804	+	170	119867366	-	Mkms_1316	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1310	 67.44	0	1408844..1410010	+	388	119867367	-	Mkms_1317	-	acyl-CoA dehydrogenase domain-containing protein
1311	 68.70	0	1410021..1411445	-	474	119867368	-	Mkms_1318	-	undecaprenyl-phosphate galactose phosphotransferase
1312	 68.39	0	1411438..1412775	-	445	119867369	-	Mkms_1319	-	hypothetical protein
1313	 67.17	0	1412776..1413573	-	265	119867370	-	Mkms_1320	-	glycosyl transferase family protein
1314	 72.69	+1	1414222..1415034	-	270	119867371	-	Mkms_1321	-	biotin--acetyl-CoA-carboxylase ligase
1315	 71.40	0	1415045..1416355	-	436	119867372	-	Mkms_1322	-	hypothetical protein
1316	 70.57	0	1416764..1417609	+	281	119867373	-	Mkms_1323	-	glycosyl transferase family protein
1317	 72.00	+1	1417606..1418937	+	443	119867374	-	Mkms_1324	-	polysaccharide biosynthesis protein
1318	 72.68	+1	1419134..1420513	+	459	119867375	-	Mkms_1325	-	hypothetical protein
1319	 67.78	0	1420510..1421859	+	449	119867376	-	Mkms_1326	-	hypothetical protein
1320	 70.05	0	1421848..1422912	-	354	119867377	-	Mkms_1327	-	glycosyl transferase, group 1
1321	 72.22	+1	1422909..1423970	-	353	119867378	-	Mkms_1328	-	glycosyl transferase, group 1
1322	 71.53	0	1423993..1425123	-	376	119867379	-	Mkms_1329	-	hypothetical protein
1323	 69.29	0	1425107..1426060	-	317	119867380	-	Mkms_1330	-	polysaccharide deacetylase
1324	 72.59	+1	1426057..1426917	-	286	119867381	-	Mkms_1331	-	hypothetical protein
1325	 70.88	0	1427027..1428190	+	387	119867382	-	Mkms_1332	-	UDP-N-acetylglucosamine 2-epimerase
1326	 64.83	-1	1428208..1428534	-	108	119867383	-	Mkms_1333	-	hypothetical protein
1327	 72.68	+1	1428678..1429409	-	243	119867384	-	Mkms_1334	-	hypothetical protein
1328	 68.77	0	1429397..1430869	-	490	119867385	-	Mkms_1335	-	cell envelope-related transcriptional attenuator
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.