IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1197	 69.61	0	1290502..1291794	+	430	119867254	-	Mkms_1204	-	hypothetical protein
1198	 72.77	+1	1291974..1292579	+	201	119867255	-	Mkms_1205	-	methyltransferase type 11
1199	 72.03	+1	1292771..1295326	+	851	119867256	-	Mkms_1206	-	integral membrane sensor signal transduction histidine kinase
1200	 67.87	0	1295323..1295739	+	138	119867257	-	Mkms_1207	-	roadblock/LC7 family protein
1201	 69.57	0	1295768..1296112	+	114	119867258	-	Mkms_1208	-	hypothetical protein
1202	 67.18	0	1296093..1296674	+	193	119867259	-	Mkms_1209	-	protein of unknown function, ATP binding
1203	 69.57	0	1296677..1297228	+	183	119867260	-	Mkms_1210	-	pentapeptide repeat-containing protein
1204	 72.08	+1	1297240..1297590	-	116	119867261	-	Mkms_1211	-	hypothetical protein
1205	 65.24	-1	1297632..1297982	-	116	119867262	-	Mkms_1212	-	hypothetical protein
1206	 70.22	0	1298045..1298410	-	121	119867263	-	Mkms_1213	-	hypothetical protein
1207	 69.35	0	1298653..1299471	+	272	119867264	-	Mkms_1214	-	transglutaminase domain-containing protein
1208	 71.10	0	1299458..1300699	-	413	119867265	-	Mkms_1215	-	PGAP1 family protein
1209	 73.83	+1	1300686..1301327	-	213	119867266	-	Mkms_1216	-	putative transmembrane protein
1210	 71.26	0	1301344..1302300	-	318	119867267	-	Mkms_1217	-	helix-turn-helix domain-containing protein
1211	 69.59	0	1302414..1305014	-	866	119867268	-	Mkms_1218	-	ABC transporter related
1212	 70.56	0	1305058..1305957	-	299	119867269	-	Mkms_1219	-	hypothetical protein
1213	 68.74	0	1305962..1307167	-	401	119867270	-	Mkms_1220	-	NADH:flavin oxidoreductase/NADH oxidase
1214	 69.20	0	1307185..1308051	+	288	119867271	-	Mkms_1221	-	methenyltetrahydrofolate cyclohydrolase
1215	 68.37	0	1308048..1308341	+	97	119867272	-	Mkms_1222	-	hypothetical protein
1216	 70.42	0	1308415..1309134	-	239	119867273	-	Mkms_1223	-	methyltransferase type 11
1217	 72.28	+1	1309131..1310252	-	373	119867274	metX	Mkms_1224	-	homoserine O-acetyltransferase
1218	 67.43	0	1310280..1311587	-	435	119867275	-	Mkms_1225	-	O-acetylhomoserine aminocarboxypropyltransferase
1219	 64.54	-1	1311900..1314152	+	750	119867276	-	Mkms_1226	-	isocitrate dehydrogenase, NADP-dependent
1220	 68.54	0	1314162..1315016	-	284	119867277	-	Mkms_1227	-	alpha/beta hydrolase fold
1221	 69.44	0	1315080..1315871	+	263	119867278	-	Mkms_1228	-	exodeoxyribonuclease III Xth
1222	 66.96	0	1315900..1316934	+	344	119867279	-	Mkms_1229	-	tryptophanyl-tRNA synthetase
1223	 67.84	0	1316950..1317969	+	339	119867280	-	Mkms_1230	-	putative ribonuclease
1224	 66.67	0	1317966..1318289	-	107	119867281	-	Mkms_1231	-	small multidrug resistance protein
1225	 76.69	+2	1318395..1319282	+	295	119867282	-	Mkms_1232	-	2-nitropropane dioxygenase, NPD
1226	 73.15	+1	1319260..1320492	-	410	119867283	-	Mkms_1233	-	Serine-type D-Ala-D-Ala carboxypeptidase
1227	 71.60	0	1320646..1321659	-	337	119867284	-	Mkms_1234	-	strictosidine synthase
1228	 66.88	0	1321753..1323138	-	461	119867285	-	Mkms_1235	-	hypothetical protein
1229	 63.84	-1	1323135..1323665	-	176	119867286	-	Mkms_1236	-	AsnC family transcriptional regulator
1230	 68.89	0	1323731..1325302	+	523	119867287	-	Mkms_1237	-	gamma-aminobutyraldehyde dehydrogenase
1231	 67.01	0	1325322..1325609	-	95	119867288	-	Mkms_1238	-	hypothetical protein
1232	 70.36	0	1325625..1326815	-	396	119867289	-	Mkms_1239	-	acyltransferase 3
1233	 71.97	+1	1326922..1327845	+	307	119867290	-	Mkms_1240	-	RNA polymerase sigma factor SigJ
1234	 67.01	0	1327805..1328383	-	192	119867291	-	Mkms_1241	-	putative transposase fusion protein
1235	 67.18	0	1328518..1328910	+	130	119867292	-	Mkms_1242	-	hypothetical protein
1236	 69.85	0	1329018..1330148	+	376	119867293	-	Mkms_1243	-	hypothetical protein
1237	 66.54	0	1330232..1331008	-	258	119867294	sdhB	Mkms_1244	-	succinate dehydrogenase iron-sulfur subunit
1238	 67.64	0	1331073..1332827	-	584	119867295	sdhA	Mkms_1245	-	succinate dehydrogenase flavoprotein subunit
1239	 65.21	-1	1332841..1333320	-	159	119867296	-	Mkms_1246	-	succinate dehydrogenase subunit D
1240	 63.40	-1	1333317..1333745	-	142	119867297	-	Mkms_1247	-	succinate dehydrogenase, cytochrome b subunit
1241	 66.91	0	1333976..1334392	+	138	119867298	-	Mkms_1248	-	cytidine deaminase
1242	 71.42	0	1334389..1335735	+	448	119867299	deoA	Mkms_1249	-	thymidine phosphorylase
1243	 68.69	0	1335772..1336860	+	362	119867300	-	Mkms_1250	-	adenosine deaminase
1244	 69.74	0	1336865..1338133	-	422	119867301	-	Mkms_1251	-	hypothetical protein
1245	 74.36	+1	1338144..1338455	-	103	119867302	-	Mkms_1252	-	hypothetical protein
1246	 67.39	0	1338569..1339531	+	320	119867303	-	Mkms_1253	-	putative adenylate/guanylate cyclase
1247	 70.17	0	1339528..1342611	+	1027	119867304	-	Mkms_1254	-	adenylate/guanylate cyclase
1248	 68.76	0	1342790..1345942	+	1050	119867305	-	Mkms_1255	-	adenylyl cyclase class-3/4/guanylyl cyclase
1249	 76.31	+2	1345949..1347037	-	362	119867306	-	Mkms_1256	-	NLP/P60 protein
1250	 71.63	0	1347384..1348007	+	207	119867307	upp	Mkms_1257	-	uracil phosphoribosyltransferase
1251	 70.82	0	1348011..1349648	-	545	119867308	-	Mkms_1258	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1252	 69.76	0	1349645..1350097	-	150	119867309	-	Mkms_1259	-	MarR family transcriptional regulator
1253	 72.62	+1	1350204..1351328	+	374	119867310	-	Mkms_1260	-	putative ammonia monooxygenase
1254	 74.34	+1	1351274..1352068	-	264	119867311	-	Mkms_1261	-	purine nucleoside phosphorylase
1255	 72.59	+1	1352125..1353306	+	393	119867312	-	Mkms_1262	-	amidohydrolase
1256	 71.01	0	1353303..1354475	+	390	119867313	-	Mkms_1263	-	amidohydrolase
1257	 70.61	0	1354483..1355751	-	422	119867314	-	Mkms_1264	-	hypothetical protein
1258	 70.42	0	1355809..1356288	-	159	119867315	-	Mkms_1265	-	hypothetical protein
1259	 69.92	0	1356359..1357771	+	470	119867316	-	Mkms_1266	-	flavoprotein disulfide reductase
1260	 69.43	0	1357819..1359558	+	579	119867317	-	Mkms_1267	-	FAD dependent oxidoreductase
1261	 70.37	0	1359555..1360418	+	287	119867318	-	Mkms_1268	-	pseudouridine synthase
1262	 70.10	0	1360426..1360833	+	135	119867319	-	Mkms_1269	-	hypothetical protein
1263	 69.91	0	1360855..1361625	+	256	119867320	-	Mkms_1270	-	short-chain dehydrogenase/reductase SDR
1264	 68.72	0	1361594..1362373	-	259	119867321	-	Mkms_1271	-	enoyl-CoA hydratase
1265	 65.45	0	1362551..1363540	+	329	119867322	-	Mkms_1272	-	integrase catalytic subunit
1266	 67.80	0	1363537..1363977	-	146	119867323	-	Mkms_1273	-	hypothetical protein
1267	 67.26	0	1363955..1364629	-	224	119867324	-	Mkms_1274	-	TetR family transcriptional regulator
1268	 72.28	+1	1364700..1365767	+	355	119867325	-	Mkms_1275	-	oxidoreductase FAD-binding subunit
1269	 64.50	-1	1365782..1366891	+	369	119867326	-	Mkms_1276	-	fatty acid desaturase
1270	 66.67	0	1366981..1367712	-	243	119867327	-	Mkms_1277	-	respiratory nitrate reductase, gamma subunit
1271	 71.10	0	1367714..1368367	-	217	119867328	-	Mkms_1278	-	respiratory nitrate reductase chaperone NarJ
1272	 66.97	0	1368364..1370019	-	551	119867329	-	Mkms_1279	-	respiratory nitrate reductase beta subunit
1273	 69.49	0	1370019..1373702	-	1227	119867330	-	Mkms_1280	-	respiratory nitrate reductase alpha subunit apoprotein
1274	 68.22	0	1373699..1374919	-	406	119867331	-	Mkms_1281	-	major facilitator superfamily transporter
1275	 69.12	0	1375069..1375842	-	257	119867332	-	Mkms_1282	-	DNA-formamidopyrimidine glycosylase
1276	 69.57	0	1375924..1376475	+	183	119867333	-	Mkms_1283	-	sulfatase family protein
1277	 71.39	0	1376496..1381067	-	1523	119867334	-	Mkms_1284	-	DEAD/DEAH box helicase domain-containing protein
1278	 73.36	+1	1381171..1381962	-	263	119867335	-	Mkms_1285	-	short-chain dehydrogenase/reductase SDR
1279	 71.35	0	1382103..1383383	+	426	119867336	-	Mkms_1286	-	glycosyl transferase family protein
1280	 69.81	0	1383334..1384923	-	529	119867337	-	Mkms_1287	-	delta-1-piperideine-6-carboxylate dehydrogenase
1281	 67.66	0	1384975..1385475	+	166	119867338	-	Mkms_1288	-	AsnC family transcriptional regulator
1282	 67.95	0	1385643..1386965	+	440	119867339	-	Mkms_1289	-	L-lysine aminotransferase
1283	 71.51	0	1386859..1387560	-	233	119867340	-	Mkms_1290	-	restriction endonuclease
1284	 72.08	+1	1387639..1387989	+	116	119867341	-	Mkms_1291	-	hypothetical protein
1285	 65.70	0	1388072..1388380	+	102	119867342	-	Mkms_1292	-	putative protein UsfY
1286	 65.82	0	1388442..1388678	-	78	119867343	-	Mkms_1293	-	CsbD family protein
1287	 66.67	0	1388743..1389600	-	285	119867344	-	Mkms_1294	-	short-chain dehydrogenase/reductase SDR
1288	 70.25	0	1389908..1391134	+	408	119867345	-	Mkms_1295	-	glycosyl transferase, group 1
1289	 67.35	0	1391227..1392246	-	339	119867346	-	Mkms_1296	-	hypothetical protein
1290	 64.44	-1	1392441..1392980	+	179	119867347	-	Mkms_1297	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1291	 67.55	0	1392977..1393768	+	263	119867348	-	Mkms_1298	-	RNA polymerase sigma factor SigF
1292	 69.01	0	1393739..1394164	-	141	119867349	-	Mkms_1299	-	anti-sigma-factor antagonist
1293	 73.44	+1	1394395..1394940	+	181	119867350	-	Mkms_1300	-	hypothetical protein
1294	 67.27	0	1394975..1395304	-	109	119867351	-	Mkms_1301	-	hypothetical protein
1295	 72.53	+1	1395465..1395788	-	107	119867352	-	Mkms_1302	-	hypothetical protein
1296	 67.03	0	1395920..1396744	+	274	119867353	-	Mkms_1303	-	chloride peroxidase
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.