IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1112	 69.16	0	1204703..1207432	-	909	119867169	-	Mkms_1118	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1113	 72.58	+1	1207445..1208323	-	292	119867170	-	Mkms_1119	-	UspA domain-containing protein
1114	 69.94	0	1208417..1209424	-	335	119867171	-	Mkms_1120	-	CBS domain-containing protein
1115	 68.47	0	1209435..1210322	-	295	119867172	-	Mkms_1121	-	UspA domain-containing protein
1116	 68.78	0	1210422..1211321	+	299	119867173	-	Mkms_1122	-	UspA domain-containing protein
1117	 66.67	0	1211321..1211860	+	179	119867174	-	Mkms_1123	-	GCN5-related N-acetyltransferase
1118	 71.30	0	1211869..1212861	-	330	119867175	-	Mkms_1124	-	hypothetical protein
1119	 59.91	-2	1213262..1213483	+	73	119867176	infA	Mkms_1125	-	translation initiation factor IF-1
1120	 64.04	-1	1213519..1213632	+	37	119867177	rpmJ	Mkms_1126	-	50S ribosomal protein L36
1121	 66.67	0	1213805..1214179	+	124	119867178	rpsM	Mkms_1127	-	30S ribosomal protein S13
1122	 67.87	0	1214184..1214600	+	138	119867179	-	Mkms_1128	-	30S ribosomal protein S11
1123	 67.33	0	1214615..1215220	+	201	119867180	rpsD	Mkms_1129	-	30S ribosomal protein S4
1124	 65.81	0	1215297..1216349	+	350	119867181	-	Mkms_1130	-	DNA-directed RNA polymerase subunit alpha
1125	 68.37	0	1216424..1217011	+	195	119867182	rplQ	Mkms_1131	-	50S ribosomal protein L17
1126	 71.78	0	1217016..1217915	+	299	119867183	truA	Mkms_1132	-	tRNA pseudouridine synthase A
1127	 68.77	0	1217975..1218688	-	237	119867184	-	Mkms_1133	-	cutinase
1128	 72.15	+1	1218694..1219368	-	224	119867185	-	Mkms_1134	-	cutinase
1129	 71.76	0	1219386..1220465	-	359	119867186	-	Mkms_1135	-	hypothetical protein
1130	 67.75	0	1220534..1221088	+	184	119867187	-	Mkms_1136	-	hypothetical protein
1131	 64.35	-1	1221135..1222211	+	358	119867188	-	Mkms_1137	-	integrase catalytic subunit
1132	 67.12	0	1222494..1223585	-	363	119867189	-	Mkms_1138	-	transposase IS116/IS110/IS902 family protein
1133	 69.24	0	1223710..1224837	-	375	119867190	-	Mkms_1139	-	diguanylate cyclase
1134	 75.18	+2	1224952..1226325	+	457	119867191	-	Mkms_1140	-	hypothetical protein
1135	 74.14	+1	1226281..1227618	-	445	119867192	-	Mkms_1141	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1136	 72.91	+1	1227615..1228928	-	437	119867193	-	Mkms_1142	-	hypothetical protein
1137	 70.87	0	1229035..1232724	+	1229	119867194	-	Mkms_1143	-	cell divisionFtsK/SpoIIIE
1138	 72.45	+1	1232781..1233869	+	362	119867195	-	Mkms_1144	-	hypothetical protein
1139	 67.59	0	1233923..1234246	+	107	119867196	-	Mkms_1145	-	hypothetical protein
1140	 71.72	0	1234267..1234563	+	98	119867197	-	Mkms_1146	-	hypothetical protein
1141	 63.96	-1	1234827..1235270	+	147	161485586	rplM	Mkms_1147	-	50S ribosomal protein L13
1142	 68.97	0	1235267..1235743	+	158	119867199	-	Mkms_1148	-	SSU ribosomal protein S9P
1143	 72.64	+1	1236081..1236515	+	144	119867200	-	Mkms_1149	-	hypothetical protein
1144	 65.32	-1	1236896..1237267	+	123	119867201	-	Mkms_1150	-	hypothetical protein
1145	 70.95	0	1237301..1238701	+	466	119867202	-	Mkms_1151	-	phosphoglucosamine mutase
1146	 72.55	+1	1238741..1239046	+	101	119867203	-	Mkms_1152	-	hypothetical protein
1147	 72.09	+1	1239050..1240339	+	429	119867204	-	Mkms_1153	-	hypothetical protein
1148	 66.38	0	1240350..1241399	-	349	119867205	-	Mkms_1154	-	luciferase family protein
1149	 68.52	0	1241450..1242313	-	287	119867206	-	Mkms_1155	-	hypothetical protein
1150	 67.74	0	1242351..1244216	+	621	119867207	-	Mkms_1156	-	D-fructose-6-phosphate amidotransferase
1151	 64.14	-1	1244203..1244637	-	144	119867208	-	Mkms_1157	-	activator of Hsp90 ATPase 1 family protein
1152	 70.27	0	1244634..1244966	-	110	119867209	-	Mkms_1158	-	ArsR family transcriptional regulator
1153	 66.95	0	1245050..1245745	+	231	119867210	-	Mkms_1159	-	protein of unknown function DUF899, thioredoxin family protein
1154	 70.97	0	1245750..1246400	+	216	119867211	-	Mkms_1160	-	hypothetical protein
1155	 74.83	+1	1246442..1247899	+	485	119867212	-	Mkms_1161	-	carbohydrate kinase, YjeF related protein
1156	 65.95	0	1247917..1249302	+	461	119867213	-	Mkms_1162	-	glutamate decarboxylase
1157	 70.31	0	1249955..1251106	+	383	119867214	alr	Mkms_1163	-	alanine racemase
1158	 70.18	0	1251103..1252212	+	369	119867215	-	Mkms_1164	-	alpha/beta hydrolase fold
1159	 70.51	0	1252205..1252672	+	155	119867216	-	Mkms_1165	-	hypothetical protein
1160	 75.47	+2	1252669..1253304	+	211	119867217	-	Mkms_1166	-	peptidase M22, glycoprotease
1161	 67.71	0	1253301..1253777	+	158	119867218	-	Mkms_1167	-	ribosomal-protein-alanine acetyltransferase
1162	 71.85	+1	1253774..1254796	+	340	119867219	-	Mkms_1168	-	O-sialoglycoprotein endopeptidase
1163	 68.16	0	1254793..1255260	+	155	119867220	-	Mkms_1169	-	hypothetical protein
1164	 62.50	-1	1255343..1255726	+	127	119867221	-	Mkms_1170	-	chaperonin Cpn10
1165	 69.50	0	1255814..1257436	+	540	119867222	groEL	Mkms_1171	-	chaperonin GroEL
1166	 67.89	0	1257527..1258018	-	163	119867223	-	Mkms_1172	-	MarR family transcriptional regulator
1167	 62.08	-2	1259289..1259615	+	108	119867224	-	Mkms_1174	-	hypothetical protein
1168	 64.53	-1	1259632..1260147	+	171	119867225	-	Mkms_1175	-	Lipocalin family protein
1169	 68.46	0	1260167..1260781	+	204	119867226	-	Mkms_1176	-	hypothetical protein
1170	 68.14	0	1260784..1261395	-	203	119867227	-	Mkms_1177	-	hypothetical protein
1171	 69.90	0	1261602..1262654	+	350	119867228	-	Mkms_1178	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1172	 64.95	-1	1262743..1263033	-	96	119867229	-	Mkms_1179	-	transcription factor WhiB
1173	 74.39	+1	1263444..1264220	+	258	119867230	-	Mkms_1180	-	hypothetical protein
1174	 66.49	0	1264308..1264886	+	192	119867231	-	Mkms_1181	-	RNA polymerase sigma factor SigD
1175	 72.63	+1	1264879..1265985	+	368	119867232	-	Mkms_1182	-	hypothetical protein
1176	 67.90	0	1265994..1266398	-	134	119867233	-	Mkms_1183	-	hypothetical protein
1177	 69.69	0	1266535..1268088	+	517	119867234	-	Mkms_1184	-	inositol-5-monophosphate dehydrogenase
1178	 71.15	0	1268108..1269244	+	378	119867235	-	Mkms_1185	-	inositol-5-monophosphate dehydrogenase
1179	 69.37	0	1269310..1270272	-	320	119867236	-	Mkms_1186	-	hypothetical protein
1180	 68.24	0	1270386..1272161	+	591	119867237	-	Mkms_1187	-	FAD dependent oxidoreductase
1181	 68.40	0	1272164..1274527	-	787	119867238	-	Mkms_1188	-	Kojibiose phosphorylase
1182	 70.45	0	1274524..1275315	-	263	119867239	-	Mkms_1189	-	beta-phosphoglucomutase family hydrolase
1183	 70.00	0	1275371..1276930	+	519	119867240	guaA	Mkms_1190	-	bifunctional GMP synthase/glutamine amidotransferase protein
1184	 73.68	+1	1277072..1277770	+	232	119867241	-	Mkms_1191	-	hypothetical protein
1185	 74.59	+1	1277772..1279361	+	529	119867242	-	Mkms_1192	-	hypothetical protein
1186	 67.35	0	1279407..1279847	+	146	119867243	-	Mkms_1193	-	transcriptional regulator, TrmB
1187	 68.09	0	1279844..1280266	+	140	119867244	-	Mkms_1194	-	OsmC family protein
1188	 70.10	0	1280269..1281318	-	349	119867245	-	Mkms_1195	-	inosine/uridine-preferring nucleoside hydrolase
1189	 70.42	0	1281343..1281768	-	141	119867246	-	Mkms_1196	-	MarR family transcriptional regulator
1190	 71.72	0	1281844..1282713	+	289	119867247	-	Mkms_1197	-	dehydratase
1191	 71.62	0	1282805..1283692	+	295	119867248	-	Mkms_1198	-	UspA domain-containing protein
1192	 69.34	0	1283689..1284699	-	336	119867249	-	Mkms_1199	-	hypothetical protein
1193	 70.30	0	1284787..1288086	+	1099	119867250	dnaE2	Mkms_1200	-	error-prone DNA polymerase
1194	 66.04	0	1288111..1288752	+	213	119867251	-	Mkms_1201	-	nitroreductase
1195	 67.93	0	1288963..1289676	+	237	119867252	-	Mkms_1202	-	hypothetical protein
1196	 70.56	0	1289747..1290286	-	179	119867253	-	Mkms_1203	-	tRNA/rRNA methyltransferase (SpoU)
1197	 69.61	0	1290502..1291794	+	430	119867254	-	Mkms_1204	-	hypothetical protein
1198	 72.77	+1	1291974..1292579	+	201	119867255	-	Mkms_1205	-	methyltransferase type 11
1199	 72.03	+1	1292771..1295326	+	851	119867256	-	Mkms_1206	-	integral membrane sensor signal transduction histidine kinase
1200	 67.87	0	1295323..1295739	+	138	119867257	-	Mkms_1207	-	roadblock/LC7 family protein
1201	 69.57	0	1295768..1296112	+	114	119867258	-	Mkms_1208	-	hypothetical protein
1202	 67.18	0	1296093..1296674	+	193	119867259	-	Mkms_1209	-	protein of unknown function, ATP binding
1203	 69.57	0	1296677..1297228	+	183	119867260	-	Mkms_1210	-	pentapeptide repeat-containing protein
1204	 72.08	+1	1297240..1297590	-	116	119867261	-	Mkms_1211	-	hypothetical protein
1205	 65.24	-1	1297632..1297982	-	116	119867262	-	Mkms_1212	-	hypothetical protein
1206	 70.22	0	1298045..1298410	-	121	119867263	-	Mkms_1213	-	hypothetical protein
1207	 69.35	0	1298653..1299471	+	272	119867264	-	Mkms_1214	-	transglutaminase domain-containing protein
1208	 71.10	0	1299458..1300699	-	413	119867265	-	Mkms_1215	-	PGAP1 family protein
1209	 73.83	+1	1300686..1301327	-	213	119867266	-	Mkms_1216	-	putative transmembrane protein
1210	 71.26	0	1301344..1302300	-	318	119867267	-	Mkms_1217	-	helix-turn-helix domain-containing protein
1211	 69.59	0	1302414..1305014	-	866	119867268	-	Mkms_1218	-	ABC transporter related
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.