IslandPathversion 1.0

IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.56 STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1073	 69.30	0	1162131..1163003	-	290	119867130	-	Mkms_1078	-	3-hydroxyisobutyrate dehydrogenase
1074	 68.04	0	1163016..1164182	-	388	119867131	-	Mkms_1079	-	acyl-CoA dehydrogenase domain-containing protein
1075	 68.11	0	1164198..1165718	-	506	119867132	-	Mkms_1080	-	methylmalonate-semialdehyde dehydrogenase [acylating]
1076	 69.56	0	1165847..1166434	-	195	119867133	-	Mkms_1081	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1077	 69.15	0	1166431..1167438	-	335	119867134	-	Mkms_1082	-	dTDP-glucose 4,6-dehydratase
1078	 69.13	0	1167466..1168317	-	283	119867135	-	Mkms_1083	-	hypothetical protein
1079	 69.68	0	1168349..1169179	-	276	119867136	-	Mkms_1084	-	hypothetical protein
1080	 66.46	0	1169218..1170678	-	486	119867137	-	Mkms_1085	-	cyclic nucleotide-binding protein
1081	 69.13	0	1170690..1172354	-	554	119867138	-	Mkms_1086	-	response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1082	 72.60	+1	1172366..1172854	+	162	119867139	-	Mkms_1087	-	hypothetical protein
1083	 71.96	+1	1172851..1173738	-	295	119867140	-	Mkms_1088	-	UspA domain-containing protein
1084	 67.52	0	1173758..1174813	-	351	119867141	-	Mkms_1089	-	alcohol dehydrogenase
1085	 68.83	0	1174853..1176424	-	523	119867142	-	Mkms_1090	-	hypothetical protein
1086	 69.62	0	1176523..1177503	+	326	119867143	-	Mkms_1091	-	hypothetical protein
1087	 67.83	0	1177500..1178186	+	228	119867144	-	Mkms_1092	-	two component LuxR family transcriptional regulator
1088	 69.66	0	1178243..1179943	+	566	119867145	-	Mkms_1093	-	GAF sensor signal transduction histidine kinase
1089	 71.50	0	1179971..1180963	-	330	119867146	-	Mkms_1094	-	hypothetical protein
1090	 72.17	+1	1181124..1183448	-	774	119867147	-	Mkms_1095	-	heavy metal translocating P-type ATPase
1091	 70.18	0	1183448..1184101	-	217	119867148	-	Mkms_1096	-	hypothetical protein
1092	 70.20	0	1184185..1186224	-	679	119867149	-	Mkms_1097	-	erythromycin esterase
1093	 62.96	-1	1186254..1186685	-	143	119867150	-	Mkms_1098	-	heat shock protein Hsp20
1094	 69.62	0	1186838..1187515	+	225	119867151	-	Mkms_1099	-	hypothetical protein
1095	 63.10	-1	1187512..1187931	-	139	119867152	-	Mkms_1100	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1096	 67.79	0	1188085..1188351	+	88	119867153	-	Mkms_1101	-	hypothetical protein
1097	 69.79	0	1188379..1190460	+	693	119867154	-	Mkms_1102	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
1098	 69.39	0	1190463..1190903	-	146	119867155	-	Mkms_1103	-	hypothetical protein
1099	 69.52	0	1191197..1192036	+	279	119867156	-	Mkms_1104	-	UspA domain-containing protein
1100	 69.93	0	1192024..1192452	-	142	119867157	-	Mkms_1105	-	hypothetical protein
1101	 62.12	-1	1192616..1192879	+	87	119867158	-	Mkms_1106	-	hypothetical protein
1102	 65.44	0	1194667..1195644	+	325	119867159	-	Mkms_1108	-	pyruvate dehydrogenase (acetyl-transferring)
1103	 66.16	0	1195641..1196618	+	325	119867160	-	Mkms_1109	-	transketolase, central region
1104	 70.17	0	1196615..1197814	+	399	119867161	-	Mkms_1110	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1105	 60.92	-2	1197819..1198079	+	86	119867162	-	Mkms_1111	-	phosphopantetheine-binding protein
1106	 70.90	0	1198158..1198961	+	267	119867163	-	Mkms_1112	-	hypothetical protein
1107	 71.88	+1	1198967..1199983	+	338	119867164	-	Mkms_1113	-	alcohol dehydrogenase
1108	 70.85	0	1200164..1201048	+	294	119867165	-	Mkms_1114	-	UspA domain-containing protein
1109	 69.20	0	1201045..1201716	+	223	119867166	-	Mkms_1115	-	hypothetical protein
1110	 68.23	0	1201726..1203003	+	425	119867167	-	Mkms_1116	-	hypothetical protein
1111	 68.53	0	1203069..1204733	+	554	119867168	-	Mkms_1117	-	HAD family hydrolase
1112	 69.16	0	1204703..1207432	-	909	119867169	-	Mkms_1118	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1113	 72.58	+1	1207445..1208323	-	292	119867170	-	Mkms_1119	-	UspA domain-containing protein
1114	 69.94	0	1208417..1209424	-	335	119867171	-	Mkms_1120	-	CBS domain-containing protein
1115	 68.47	0	1209435..1210322	-	295	119867172	-	Mkms_1121	-	UspA domain-containing protein
1116	 68.78	0	1210422..1211321	+	299	119867173	-	Mkms_1122	-	UspA domain-containing protein
1117	 66.67	0	1211321..1211860	+	179	119867174	-	Mkms_1123	-	GCN5-related N-acetyltransferase
1118	 71.30	0	1211869..1212861	-	330	119867175	-	Mkms_1124	-	hypothetical protein
1119	 59.91	-2	1213262..1213483	+	73	119867176	infA	Mkms_1125	-	translation initiation factor IF-1
1120	 64.04	-1	1213519..1213632	+	37	119867177	rpmJ	Mkms_1126	-	50S ribosomal protein L36
1121	 66.67	0	1213805..1214179	+	124	119867178	rpsM	Mkms_1127	-	30S ribosomal protein S13
1122	 67.87	0	1214184..1214600	+	138	119867179	-	Mkms_1128	-	30S ribosomal protein S11
1123	 67.33	0	1214615..1215220	+	201	119867180	rpsD	Mkms_1129	-	30S ribosomal protein S4
1124	 65.81	0	1215297..1216349	+	350	119867181	-	Mkms_1130	-	DNA-directed RNA polymerase subunit alpha
1125	 68.37	0	1216424..1217011	+	195	119867182	rplQ	Mkms_1131	-	50S ribosomal protein L17
1126	 71.78	0	1217016..1217915	+	299	119867183	truA	Mkms_1132	-	tRNA pseudouridine synthase A
1127	 68.77	0	1217975..1218688	-	237	119867184	-	Mkms_1133	-	cutinase
1128	 72.15	+1	1218694..1219368	-	224	119867185	-	Mkms_1134	-	cutinase
1129	 71.76	0	1219386..1220465	-	359	119867186	-	Mkms_1135	-	hypothetical protein
1130	 67.75	0	1220534..1221088	+	184	119867187	-	Mkms_1136	-	hypothetical protein
1131	 64.35	-1	1221135..1222211	+	358	119867188	-	Mkms_1137	-	integrase catalytic subunit
1132	 67.12	0	1222494..1223585	-	363	119867189	-	Mkms_1138	-	transposase IS116/IS110/IS902 family protein
1133	 69.24	0	1223710..1224837	-	375	119867190	-	Mkms_1139	-	diguanylate cyclase
1134	 75.18	+2	1224952..1226325	+	457	119867191	-	Mkms_1140	-	hypothetical protein
1135	 74.14	+1	1226281..1227618	-	445	119867192	-	Mkms_1141	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1136	 72.91	+1	1227615..1228928	-	437	119867193	-	Mkms_1142	-	hypothetical protein
1137	 70.87	0	1229035..1232724	+	1229	119867194	-	Mkms_1143	-	cell divisionFtsK/SpoIIIE
1138	 72.45	+1	1232781..1233869	+	362	119867195	-	Mkms_1144	-	hypothetical protein
1139	 67.59	0	1233923..1234246	+	107	119867196	-	Mkms_1145	-	hypothetical protein
1140	 71.72	0	1234267..1234563	+	98	119867197	-	Mkms_1146	-	hypothetical protein
1141	 63.96	-1	1234827..1235270	+	147	161485586	rplM	Mkms_1147	-	50S ribosomal protein L13
1142	 68.97	0	1235267..1235743	+	158	119867199	-	Mkms_1148	-	SSU ribosomal protein S9P
1143	 72.64	+1	1236081..1236515	+	144	119867200	-	Mkms_1149	-	hypothetical protein
1144	 65.32	-1	1236896..1237267	+	123	119867201	-	Mkms_1150	-	hypothetical protein
1145	 70.95	0	1237301..1238701	+	466	119867202	-	Mkms_1151	-	phosphoglucosamine mutase
1146	 72.55	+1	1238741..1239046	+	101	119867203	-	Mkms_1152	-	hypothetical protein
1147	 72.09	+1	1239050..1240339	+	429	119867204	-	Mkms_1153	-	hypothetical protein
1148	 66.38	0	1240350..1241399	-	349	119867205	-	Mkms_1154	-	luciferase family protein
1149	 68.52	0	1241450..1242313	-	287	119867206	-	Mkms_1155	-	hypothetical protein
1150	 67.74	0	1242351..1244216	+	621	119867207	-	Mkms_1156	-	D-fructose-6-phosphate amidotransferase
1151	 64.14	-1	1244203..1244637	-	144	119867208	-	Mkms_1157	-	activator of Hsp90 ATPase 1 family protein
1152	 70.27	0	1244634..1244966	-	110	119867209	-	Mkms_1158	-	ArsR family transcriptional regulator
1153	 66.95	0	1245050..1245745	+	231	119867210	-	Mkms_1159	-	protein of unknown function DUF899, thioredoxin family protein
1154	 70.97	0	1245750..1246400	+	216	119867211	-	Mkms_1160	-	hypothetical protein
1155	 74.83	+1	1246442..1247899	+	485	119867212	-	Mkms_1161	-	carbohydrate kinase, YjeF related protein
1156	 65.95	0	1247917..1249302	+	461	119867213	-	Mkms_1162	-	glutamate decarboxylase
1157	 70.31	0	1249955..1251106	+	383	119867214	alr	Mkms_1163	-	alanine racemase
1158	 70.18	0	1251103..1252212	+	369	119867215	-	Mkms_1164	-	alpha/beta hydrolase fold
1159	 70.51	0	1252205..1252672	+	155	119867216	-	Mkms_1165	-	hypothetical protein
1160	 75.47	+2	1252669..1253304	+	211	119867217	-	Mkms_1166	-	peptidase M22, glycoprotease
1161	 67.71	0	1253301..1253777	+	158	119867218	-	Mkms_1167	-	ribosomal-protein-alanine acetyltransferase
1162	 71.85	+1	1253774..1254796	+	340	119867219	-	Mkms_1168	-	O-sialoglycoprotein endopeptidase
1163	 68.16	0	1254793..1255260	+	155	119867220	-	Mkms_1169	-	hypothetical protein
1164	 62.50	-1	1255343..1255726	+	127	119867221	-	Mkms_1170	-	chaperonin Cpn10
1165	 69.50	0	1255814..1257436	+	540	119867222	groEL	Mkms_1171	-	chaperonin GroEL
1166	 67.89	0	1257527..1258018	-	163	119867223	-	Mkms_1172	-	MarR family transcriptional regulator
1167	 62.08	-2	1259289..1259615	+	108	119867224	-	Mkms_1174	-	hypothetical protein
1168	 64.53	-1	1259632..1260147	+	171	119867225	-	Mkms_1175	-	Lipocalin family protein
1169	 68.46	0	1260167..1260781	+	204	119867226	-	Mkms_1176	-	hypothetical protein
1170	 68.14	0	1260784..1261395	-	203	119867227	-	Mkms_1177	-	hypothetical protein
1171	 69.90	0	1261602..1262654	+	350	119867228	-	Mkms_1178	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1172	 64.95	-1	1262743..1263033	-	96	119867229	-	Mkms_1179	-	transcription factor WhiB
68.56	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.