IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.56   STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
952	 53.11	-2	1044066..1044611	-	181	119867009	-	Mkms_0957	-	acetyltransferase
953	 54.81	-2	1044614..1045549	-	311	119867010	-	Mkms_0958	-	hypothetical protein
954	 57.36	-2	1045654..1046427	-	257	119867011	-	Mkms_0959	-	FkbM family methyltransferase
955	 61.85	-2	1046556..1046804	-	82	119867012	-	Mkms_0960	-	hypothetical protein
956	 62.05	-2	1047009..1048286	+	425	119867013	-	Mkms_0961	-	glycosyl transferase, group 1
957	 55.49	-2	1048301..1049275	-	324	119867014	-	Mkms_0962	-	NAD-dependent epimerase/dehydratase
958	 56.53	-2	1049272..1050327	-	351	119867015	-	Mkms_0963	-	GDP-mannose 4,6-dehydratase
959	 58.30	-2	1050432..1051925	-	497	119867016	-	Mkms_0964	-	lipopolysaccharide biosynthesis
960	 60.05	-2	1052337..1054103	-	588	119867017	-	Mkms_0965	-	hypothetical protein
961	 62.99	-1	1054311..1054718	-	135	119867018	-	Mkms_0966	-	hypothetical protein
962	 65.72	0	1055601..1057190	+	529	119867019	-	Mkms_0967	-	hypothetical protein
963	 66.35	0	1057338..1057652	+	104	119867020	-	Mkms_0968	-	hypothetical protein
964	 62.95	-1	1057716..1058684	-	322	119867021	-	Mkms_0969	-	cyclopropane-fatty-acyl-phospholipid synthase
965	 64.02	-1	1058792..1059661	-	289	119867022	-	Mkms_0970	-	cyclopropane-fatty-acyl-phospholipid synthase
966	 67.44	0	1059794..1060699	-	301	119867023	-	Mkms_0971	-	alpha/beta hydrolase fold
967	 66.30	0	1060701..1062059	-	452	119867024	-	Mkms_0972	-	hypothetical protein
968	 70.97	0	1062112..1063320	-	402	119867025	-	Mkms_0973	-	acyltransferase 3
969	 68.28	0	1063488..1064480	-	330	119867026	-	Mkms_0974	-	hypothetical protein
970	 74.33	+1	1064579..1065178	+	199	119867027	-	Mkms_0975	-	TetR family transcriptional regulator
971	 68.16	0	1065267..1065869	-	200	119867028	-	Mkms_0976	-	hypothetical protein
972	 66.10	0	1065869..1066396	-	175	119867029	-	Mkms_0977	-	hypothetical protein
973	 74.42	+1	1066458..1067411	+	317	119867030	-	Mkms_0978	-	helix-turn-helix, type 11 domain-containing protein
974	 68.84	0	1067401..1067952	-	183	119867031	-	Mkms_0979	-	hypothetical protein
975	 71.09	0	1068005..1068772	+	255	119867032	-	Mkms_0980	-	endonuclease/exonuclease/phosphatase
976	 72.58	+1	1068792..1072916	+	1374	119867033	-	Mkms_0981	-	glycoside hydrolase family protein
977	 74.55	+1	1072913..1073521	+	202	119867034	-	Mkms_0982	-	FabD2
978	 74.37	+1	1073523..1074431	+	302	119867035	-	Mkms_0983	-	glucokinase
979	 68.56	0	1074917..1075444	+	175	119867036	rplJ	Mkms_0984	-	50S ribosomal protein L10
980	 66.41	0	1075489..1075878	+	129	119867037	rplL	Mkms_0985	-	50S ribosomal protein L7/L12
981	 65.47	0	1076061..1077146	+	361	119867038	-	Mkms_0986	-	ABC transporter related
982	 65.47	0	1077658..1081176	+	1172	119867039	rpoB	Mkms_0987	-	DNA-directed RNA polymerase subunit beta
983	 65.98	0	1081239..1085186	+	1315	119867040	-	Mkms_0988	-	DNA-directed RNA polymerase subunit beta'
984	 69.06	0	1085245..1086207	+	320	119867041	-	Mkms_0989	-	hypothetical protein
985	 69.27	0	1086268..1087074	+	268	119867042	-	Mkms_0990	-	endonuclease IV
986	 70.13	0	1087171..1088355	+	394	119867043	-	Mkms_0991	-	phosphoesterase, PA-phosphatase related
987	 71.05	0	1088218..1088559	-	113	119867044	-	Mkms_0992	-	protein of unknown function DUF861, cupin_3
988	 71.50	0	1088618..1090273	+	551	119867045	-	Mkms_0993	-	acyl-CoA dehydrogenase domain-containing protein
989	 69.44	0	1090359..1091297	+	312	119867046	-	Mkms_0994	-	enoyl-CoA hydratase
990	 72.95	+1	1091300..1092031	+	243	119867047	-	Mkms_0995	-	PaaX domain-containing protein, C- domain
991	 73.73	+1	1092028..1092792	+	254	119867048	-	Mkms_0996	-	enoyl-CoA hydratase
992	 65.49	0	1092838..1093263	-	141	119867049	-	Mkms_0997	-	hypothetical protein
993	 67.20	0	1093266..1093643	-	125	119867050	-	Mkms_0998	-	putative transmembrane protein
994	 70.70	0	1093789..1094334	+	181	119867051	-	Mkms_0999	-	hypothetical protein
995	 66.47	0	1094336..1094854	+	172	119867052	-	Mkms_1000	-	hypothetical protein
996	 70.58	0	1094921..1095559	+	212	119867053	-	Mkms_1001	-	TetR family transcriptional regulator
997	 64.80	-1	1095879..1096253	+	124	119867054	rpsL	Mkms_1002	-	30S ribosomal protein S12
998	 66.45	0	1096253..1096723	+	156	119867055	-	Mkms_1003	-	30S ribosomal protein S7
999	 64.39	-1	1096797..1098902	+	701	119867056	-	Mkms_1004	-	elongation factor G
1000	 65.83	0	1098997..1100187	+	396	119867057	-	Mkms_1005	-	elongation factor Tu
1001	 71.79	0	1100312..1101190	+	292	119867058	-	Mkms_1006	-	cutinase
1002	 66.30	0	1101272..1102099	+	275	119867059	-	Mkms_1007	-	hypothetical protein
1003	 73.74	+1	1102100..1102933	-	277	119867060	-	Mkms_1008	-	UspA domain-containing protein
1004	 68.30	0	1103056..1103910	+	284	119867061	fabG	Mkms_1009	-	3-ketoacyl-(acyl-carrier-protein) reductase
1005	 71.56	0	1103915..1105141	-	408	119867062	-	Mkms_1010	-	aminotransferase
1006	 69.47	0	1105138..1105956	-	272	119867063	-	Mkms_1011	-	amidinotransferase
1007	 68.68	0	1106069..1106515	+	148	119867064	-	Mkms_1012	-	AsnC family transcriptional regulator
1008	 67.91	0	1106559..1107764	+	401	119867065	-	Mkms_1013	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1009	 70.80	0	1107761..1109017	-	418	119867066	-	Mkms_1014	-	glyoxalase/bleomycin resistance protein/dioxygenase
1010	 70.77	0	1109014..1109622	-	202	119867067	-	Mkms_1015	-	ECF subfamily RNA polymerase sigma-24 factor
1011	 70.00	0	1109633..1110232	-	199	119867068	-	Mkms_1016	-	TetR family transcriptional regulator
1012	 67.01	0	1110424..1110711	+	95	119867069	-	Mkms_1017	-	hypothetical protein
1013	 68.16	0	1110708..1111913	+	401	119867070	-	Mkms_1018	-	radical SAM domain-containing protein
1014	 68.84	0	1111917..1113110	+	397	119867071	-	Mkms_1019	-	(S)-2-hydroxy-acid oxidase
1015	 71.39	0	1113279..1113935	+	218	119867072	-	Mkms_1020	-	creatininase
1016	 72.40	+1	1113932..1115344	+	470	119867073	-	Mkms_1021	-	glycosyl transferase family protein
1017	 71.77	0	1115365..1116795	+	476	119867074	-	Mkms_1022	-	glucose-methanol-choline oxidoreductase
1018	 71.79	+1	1116782..1117444	-	220	119867075	-	Mkms_1023	-	Asp/Glu racemase
1019	 68.40	0	1117456..1119066	-	536	119867076	-	Mkms_1024	-	major facilitator superfamily transporter
1020	 71.01	0	1119175..1119819	+	214	119867077	-	Mkms_1025	-	TetR family transcriptional regulator
1021	 65.40	0	1119785..1121047	-	420	119867078	-	Mkms_1026	-	cytochrome P450
1022	 66.27	0	1121149..1122399	-	416	119867079	-	Mkms_1027	-	cytochrome P450
1023	 72.76	+1	1122508..1124115	+	535	119867080	-	Mkms_1028	-	carboxylesterase, type B
1024	 63.40	-1	1124433..1124738	+	101	119867081	-	Mkms_1029	-	30S ribosomal protein S10
1025	 69.11	0	1124751..1125404	+	217	119867082	rplC	Mkms_1030	-	50S ribosomal protein L3
1026	 68.18	0	1125405..1126064	+	219	119867083	rplD	Mkms_1031	-	50S ribosomal protein L4
1027	 62.05	-2	1126064..1126366	+	100	119867084	rplW	Mkms_1032	-	50S ribosomal protein L23
1028	 69.06	0	1126399..1127235	+	278	119867085	rplB	Mkms_1033	-	50S ribosomal protein L2
1029	 61.35	-2	1127257..1127538	+	93	119867086	rpsS	Mkms_1034	-	30S ribosomal protein S19
1030	 70.97	0	1127535..1128068	+	177	119867087	rplV	Mkms_1035	-	50S ribosomal protein L22
1031	 70.49	0	1128068..1128931	+	287	119867088	rpsC	Mkms_1036	-	30S ribosomal protein S3
1032	 63.79	-1	1128934..1129350	+	138	119867089	rplP	Mkms_1037	-	50S ribosomal protein L16
1033	 61.97	-2	1129350..1129583	+	77	119867090	-	Mkms_1038	-	50S ribosomal protein L29
1034	 65.00	-1	1129583..1129882	+	99	119867091	-	Mkms_1039	-	SSU ribosomal protein S17P
1035	 66.71	0	1129966..1132317	+	783	119867092	-	Mkms_1040	-	sulfatase
1036	 71.82	+1	1132335..1133207	+	290	119867093	-	Mkms_1041	-	hypothetical protein
1037	 63.14	-1	1133423..1133791	+	122	119867094	-	Mkms_1042	-	50S ribosomal protein L14P
1038	 63.84	-1	1133792..1134109	+	105	119867095	rplX	Mkms_1043	-	50S ribosomal protein L24
1039	 66.13	0	1134111..1134674	+	187	119867096	rplE	Mkms_1044	-	50S ribosomal protein L5
1040	 63.98	-1	1134679..1134864	+	61	119867097	rpsN	Mkms_1045	-	30S ribosomal protein S14
1041	 64.16	-1	1134957..1135355	+	132	119867098	rpsH	Mkms_1046	-	30S ribosomal protein S8
1042	 65.00	-1	1135369..1135908	+	179	119867099	rplF	Mkms_1047	-	50S ribosomal protein L6
1043	 68.64	0	1135912..1136316	+	134	119867100	rplR	Mkms_1048	-	50S ribosomal protein L18
1044	 69.64	0	1136348..1137019	+	223	119867101	rpsE	Mkms_1049	-	30S ribosomal protein S5
1045	 65.05	-1	1137016..1137201	+	61	119867102	-	Mkms_1050	-	50S ribosomal protein L30P
1046	 67.56	0	1137206..1137655	+	149	119867103	rplO	Mkms_1051	-	50S ribosomal protein L15
1047	 59.52	-2	1138101..1138814	+	237	119867104	-	Mkms_1052	-	hypothetical protein
1048	 62.94	-1	1138811..1139266	+	151	119867105	-	Mkms_1053	-	hypothetical protein
1049	 68.16	0	1139301..1140170	+	289	119867106	-	Mkms_1054	-	short-chain dehydrogenase/reductase SDR
1050	 67.19	0	1140142..1141104	+	320	119867107	-	Mkms_1055	-	AraC family transcriptional regulator
1051	 69.92	0	1141168..1142949	+	593	119867108	-	Mkms_1056	-	hypothetical protein
68.56	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.