IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
40	 36.54	0	48105..48416	-	103	13507779	-	MPN040	-	hypothetical protein
41	 36.01	0	48670..49230	+	186	13507780	-	MPN041	-	hypothetical protein
42	 37.10	0	49292..51310	+	672	13507781	-	MPN042	-	hypothetical protein
43	 40.00	0	51634..52428	+	264	13507782	glpF	MPN043	-	glycerol uptake facilitator
44	 43.23	0	52475..53050	-	191	13507783	tdk	MPN044	-	thymidine kinase
45	 45.22	+1	53077..54321	+	414	13507784	hisS	MPN045	-	histidyl-tRNA synthetase
46	 42.95	0	54293..55966	+	557	13507785	aspS	MPN046	-	aspartyl-tRNA synthetase
47	 41.89	0	55942..57297	+	451	13507786	-	MPN047	-	putative nicotinate phosphoribosyltransferase
48	 37.83	0	57886..59442	+	518	13507787	-	MPN048	-	membrane export protein family protein
49	 38.18	0	59619..61517	+	632	13507788	-	MPN049	-	membrane export protein family protein
50	 40.21	0	61977..63503	-	508	13507789	glpK	MPN050	-	glycerol kinase
51	 39.39	0	63494..64648	-	384	13507790	glpD	MPN051	-	glycerol-3-phospate dehydrogenase
52	 35.66	0	64831..66804	+	657	13507791	-	MPN052	-	putative lipoprotein
53	 38.58	0	66822..67088	+	88	13507792	ptsH	MPN053	-	phosphocarrier protein HPr
54	 30.11	-2	68627..68998	+	123	13507793	-	MPN054	-	hypothetical protein
55	 38.44	0	70404..72086	+	560	13507794	potA	MPN055	-	spermidine/putrescine transport ATP-binding prot
56	 38.68	0	72088..72948	+	286	13507795	potB	MPN056	-	spermidine/putrescine transport system permease
57	 39.84	0	72941..73801	+	286	13507796	potI	MPN057	-	spermidine/putrescine transport system permease
58	 38.20	0	73786..75243	+	485	13507797	-	MPN058	-	hypothetical protein
59	 43.33	0	75243..76202	+	319	13507798	gcp	MPN059	-	O-sialoglycoprotein endopeptidase
60	 42.97	0	76186..77337	+	383	13507799	metX	MPN060	-	S-adenosylmethionine synthetase
61	 44.05	0	77625..78977	-	450	13507800	ffh	MPN061	-	signal recognition particle protein
62	 46.58	+1	79033..79749	+	238	13507801	deoD	MPN062	-	purine nucleoside phosphorylase
63	 41.93	0	79753..80427	+	224	13507802	deoC	MPN063	-	deoxyribose-phosphate aldolase
64	 42.81	0	80414..81679	+	421	13507803	deoA	MPN064	-	thymidine phosphorylase
65	 40.30	0	81690..82091	+	133	13507804	cdd	MPN065	-	cytidine deaminase
66	 42.64	0	82081..83745	+	554	13507805	cpsG	MPN066	-	phosphomannomutase/phosphoglucomutase
67	 41.12	0	83713..84675	-	320	13507806	nusG	MPN067	-	transcription antitermination factor
68	 37.04	0	84683..85060	-	125	13507807	secE	MPN068	-	preprotein translocase subunit SecE
69	 36.73	0	85066..85212	-	48	13507808	rpmG	MPN069	-	50S ribosomal protein L33
70	 39.06	0	85228..85611	-	127	13507809	-	MPN070	-	hypothetical protein
71	 42.48	0	85598..86428	-	276	13507810	yabC	MPN071	-	hypothetical protein
72	 40.41	0	86410..86946	-	178	13507811	yabF	MPN072	-	nucelotidyl transferase/polynicleotide cleavage
73	 43.19	0	86925..88091	-	388	13507812	prs	MPN073	-	ribose-phosphate pyrophosphokinase
74	 39.19	0	87898..88341	-	147	13507813	smpB	MPN074	-	SsrA-binding protein
75	 37.00	0	88348..89247	+	299	13507814	ywdF	MPN075	-	glycosyl transferase
76	 42.12	0	89299..90993	-	564	13507815	uhpT	MPN076	-	hypothetical protein
77	 40.16	0	91199..92839	-	546	13507816	-	MPN077	-	hypothetical protein
78	 42.35	0	93191..95275	+	694	13507817	fruA	MPN078	-	fructose-permease IIBC component
79	 40.20	0	95268..96170	+	300	13507818	fruK	MPN079	-	1-phosphofructokinase
80	 40.88	0	96407..100567	+	1386	13507819	-	MPN080	-	ABC transporter membrane protein
81	 42.13	0	100567..101964	+	465	13507820	glnQ	MPN081	-	glutamine transport ATP-binding protein
82	 45.04	0	101985..103931	+	648	13507821	tklB	MPN082	-	transketolase
83	 40.89	0	103941..105542	+	533	13507822	-	MPN083	-	hypothetical protein
84	 38.60	0	105592..107166	+	524	13507823	-	MPN084	-	hypothetical protein
85	 27.74	-2	107273..108595	+	440	13507824	-	MPN085	-	adhesin P1
86	 27.67	-2	108857..109174	+	105	13507825	-	MPN086	-	adhesin P1
87	 28.70	-2	109346..109798	+	150	13507826	-	MPN087	-	adhesin P1
88	 31.05	-1	110813..111118	+	101	13507827	-	MPN088	-	hypothetical protein
89	 35.22	-1	111610..112617	+	335	13507828	hsdS	MPN089	-	hypothetical protein
90	 30.91	-1	112772..113761	+	329	13507829	-	MPN090	-	adhesin P1
91	 52.04	+2	113838..114254	+	138	13507830	-	MPN091	-	hypothetical protein
92	 51.15	+2	114572..115093	+	173	13507831	-	MPN092	-	involved in cytadherence
93	 53.20	+2	114948..115853	+	301	13507832	-	MPN093	-	involved in cytadherence
94	 37.12	0	116287..116709	+	140	13507833	-	MPN094	-	hypothetical protein
95	 42.48	0	123290..124054	+	254	13507834	-	MPN095	-	aa_permeases
96	 41.38	0	124054..124848	+	264	13507835	-	MPN096	-	aa_permeases
97	 38.01	0	125024..126649	+	541	13507836	-	MPN097	-	hypothetical protein
98	 39.64	0	126947..127390	+	147	13507837	-	MPN098	-	hypothetical protein
99	 54.21	+2	128076..129119	+	347	13507838	-	MPN099	-	hypothetical protein
100	 36.41	0	129458..130009	+	183	13507839	-	MPN100	-	hypothetical protein
101	 55.87	+2	130466..131752	+	428	13507840	-	MPN101	-	hypothetical protein
102	 51.89	+2	132568..133386	+	272	13507841	-	MPN102	-	involved in cytadherence
103	 38.15	0	134055..134573	-	172	13507842	-	MPN103	-	hypothetical protein
104	 33.97	-1	134583..134897	+	104	13507843	-	MPN104	-	hypothetical protein
105	 40.16	0	135731..136756	+	341	13507844	pheS	MPN105	-	phenylalanyl-tRNA synthetase subunit alpha
106	 39.95	0	136759..139176	+	805	13507845	pheT	MPN106	-	phenylalanyl-tRNA synthetase subunit beta
107	 33.07	-1	139289..140044	+	251	13507846	-	MPN107	-	hypothetical protein
108	 33.09	-1	140046..141260	+	404	13507847	-	MPN108	-	hypothetical protein
109	 30.92	-1	141940..142437	+	165	13507848	-	MPN109	-	hypothetical protein
110	 30.97	-1	142361..144517	+	718	13507849	-	MPN110	-	hypothetical protein
111	 33.10	-1	145021..146289	+	422	13507850	-	MPN111	-	hypothetical protein
112	 42.75	0	147149..147541	+	130	13507851	-	MPN112	-	permease
113	 39.43	0	148090..148761	+	223	13507852	-	MPN113	-	putative G3P transporters
114	 43.54	0	148751..150553	+	600	13507853	cpt2	MPN114	-	acyltransferase
115	 38.78	0	150643..151248	+	201	13507854	infC	MPN115	-	translation initiation factor IF-3
116	 42.22	0	151254..151433	+	59	13507855	rpmI	MPN116	-	50S ribosomal protein L35
117	 44.53	0	151444..151827	+	127	13507856	rplT	MPN117	-	50S ribosomal protein L20
118	 41.07	0	151802..152512	-	236	13507857	-	MPN118	-	similarity with ribonuclease HII
119	 42.99	0	152568..155300	+	910	13507858	-	MPN119	-	hypothetical protein
120	 39.45	0	155323..155976	+	217	13507859	grpE	MPN120	-	heat shock protein GrpE
121	 37.16	0	155976..156341	+	121	13507860	-	MPN121	-	hypothetical protein
122	 42.82	0	156467..158374	+	635	13507861	parB	MPN122	-	topoisomerase IV subunit B
123	 42.28	0	158374..160743	+	789	13507862	parC	MPN123	-	topoisomerase IV subunit A
124	 39.68	0	160730..161785	-	351	13507863	hrcA	MPN124	-	heat-inducible transcription repressor
125	 41.40	0	161817..163577	+	586	13507864	uvrC	MPN125	-	excinuclease ABC subunit C
126	 39.58	0	163613..164092	+	159	13507865	-	MPN126	-	hypothetical protein
127	 35.36	-1	164484..165026	+	180	13507866	-	MPN127	-	hypothetical protein
128	 55.78	+2	166483..166932	+	149	13507867	-	MPN128	-	hypothetical protein
129	 31.56	-1	167632..168081	+	149	13507868	-	MPN129	-	adhesin P1
130	 38.30	0	169042..169464	+	140	13507869	-	MPN130	-	hypothetical protein
131	 52.85	+2	170068..170733	+	221	13507870	-	MPN131	-	hypothetical protein
132	 53.96	+2	171049..171819	+	256	13507871	-	MPN132	-	hypothetical protein
133	 43.16	0	172277..173182	+	301	13507872	-	MPN133	-	putative lipoprotein
134	 41.28	0	173206..174966	+	586	13507873	ugpC	MPN134	-	sn-glycerol-3-phosphate transport system permease protein
135	 38.99	0	174959..175948	+	329	13507874	ugpA	MPN135	-	sn-glycerol-3-phosphate transport system permease protein
136	 40.94	0	175920..176879	+	319	13507875	ugpE	MPN136	-	sn-glycerol-3-phosphate transport system permease protein
137	 36.97	0	177457..178143	-	228	13507876	-	MPN137	-	hypothetical protein
138	 35.53	0	178392..178892	-	166	13507877	-	MPN138	-	hypothetical protein
139	 37.20	0	179129..179620	-	163	13507878	-	MPN139	-	hypothetical protein
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.