IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
589	 38.47	0	709615..711210	-	531	13508327	-	MPN588	-	hypothetical protein
590	 36.50	0	711423..711896	-	157	13508328	-	MPN589	-	hypothetical protein
591	 35.93	0	712037..712690	-	217	13508329	-	MPN590	-	hypothetical protein
592	 39.17	0	712847..713908	-	353	13508330	-	MPN591	-	hypothetical protein
593	 38.57	0	714431..715996	-	521	13508331	-	MPN592	-	hypothetical protein
594	 35.23	-1	716097..716465	-	122	13508332	-	MPN593	-	hypothetical protein
595	 37.67	0	716691..717059	-	122	13508333	-	MPN594	-	hypothetical protein
596	 42.27	0	716977..717435	-	152	13508334	lacA	MPN595	-	ribose-5-phosphate isomerase B
597	 35.85	0	717435..719144	-	569	13508335	-	MPN596	-	hypothetical protein
598	 42.04	0	719144..719545	-	133	13508336	atpC	MPN597	-	F0F1 ATP synthase subunit epsilon
599	 47.41	+1	719548..720975	-	475	13508337	atpD	MPN598	-	F0F1 ATP synthase subunit beta
600	 41.07	0	720975..721814	-	279	13508338	atpG	MPN599	-	F0F1 ATP synthase subunit gamma
601	 45.34	+1	721814..723370	-	518	13508339	atpA	MPN600	-	F0F1 ATP synthase subunit alpha
602	 38.36	0	723373..723909	-	178	13508340	atpH	MPN601	-	F0F1 ATP synthase subunit delta
603	 41.51	0	723902..724525	-	207	13508341	atpF	MPN602	-	F0F1 ATP synthase subunit B
604	 44.97	0	724528..724845	-	105	13508342	atpE	MPN603	-	F0F1 ATP synthase subunit C
605	 40.70	0	724848..725729	-	293	13508343	atpB	MPN604	-	F0F1 ATP synthase subunit A
606	 36.08	0	725695..726168	-	157	13508344	-	MPN605	-	hypothetical protein
607	 42.89	0	726174..727544	-	456	13508345	eno	MPN606	-	phosphopyruvate hydratase
608	 39.87	0	727599..728072	+	157	13508346	pmsR	MPN607	-	methionine sulfoxide reductase A
609	 35.84	0	728069..728746	-	225	13508347	phoU	MPN608	-	phosphate transport system regulatory protein
610	 38.48	0	728749..729738	-	329	13508348	pstB	MPN609	-	phosphate specific
611	 38.80	0	729723..731678	-	651	13508349	pstA	MPN610	-	Psta /Pstc-like ABC transporter; phosphate specific
612	 39.72	0	731678..732835	-	385	13508350	-	MPN611	-	phosphate binding protein Psts
613	 34.27	-1	733077..736070	-	997	13508351	-	MPN612	-	hypothetical protein
614	 32.75	-1	736185..737219	-	344	13508352	-	MPN613	-	hypothetical protein
615	 30.95	-1	737155..738159	-	334	13508353	-	MPN614	-	hypothetical protein
616	 34.93	-1	738245..738994	-	249	13508354	hsdS	MPN615	-	hypothetical protein
617	 40.85	0	739424..739822	-	132	13508355	rpsI	MPN616	-	30S ribosomal protein S9
618	 40.82	0	739828..740268	-	146	13508356	rplM	MPN617	-	50S ribosomal protein L13
619	 40.37	0	740299..742344	-	681	13508357	dnaX	MPN618	-	gamma-like
620	 42.47	0	742353..745199	-	948	13508358	uvrA	MPN619	-	excinuclease ABC subunit A
621	 37.70	0	745177..747696	-	839	13508359	-	MPN620	-	hypothetical protein
622	 42.23	0	747742..749427	-	561	13508360	-	MPN621	-	metallo hydrolase
623	 40.61	0	749432..749692	-	86	13508361	rpsO	MPN622	-	30S ribosomal protein S15
624	 41.91	0	749850..751202	+	450	13508362	deaD	MPN623	-	ATP-dependent RNA helicase deaD
625	 44.44	0	751224..751421	+	65	13508363	rpmB	MPN624	-	50S ribosomal protein L28
626	 44.13	0	751465..751890	+	141	13508364	-	MPN625	-	osmotical inducible protein C-like protein
627	 38.92	0	752025..752543	+	172	13508365	-	MPN626	-	hypothetical protein
628	 44.39	0	752540..754258	-	572	13508366	ptsI	MPN627	-	PEP-dependent HPr protein kinase phosphoryltransferase (enzyme I)
629	 44.14	0	754263..755789	-	508	13508367	pgm	MPN628	-	phosphoglyceromutase
630	 41.50	0	755782..756516	-	244	13508368	tim	MPN629	-	triosephosphate isomerase
631	 40.66	0	756569..757783	-	404	13508369	yfiB	MPN630	-	hypothetical protein
632	 40.25	0	757870..758766	+	298	13508370	tsf	MPN631	-	elongation factor Ts
633	 42.23	0	758768..759475	+	235	13508371	pyrH	MPN632	-	uridylate kinase
634	 37.23	0	759578..760321	+	247	13508372	-	MPN633	-	hypothetical protein
635	 34.25	-1	760403..760948	+	181	13508373	-	MPN634	-	hypothetical protein
636	 33.52	-1	761504..762562	+	352	13508374	-	MPN635	-	hypothetical protein
637	 36.94	0	762639..763193	+	184	13508375	frr	MPN636	-	ribosome releasing factor
638	 36.45	0	763193..764380	+	395	13508376	cdsA	MPN637	-	CDP-diglyceride synthetase
639	 37.77	0	764400..765527	+	375	13508377	-	MPN638	-	K family restriction enzyme specificity determining subunit
640	 37.50	0	765524..766387	-	287	13508378	-	MPN639	-	hypothetical protein
641	 33.33	-1	766395..767297	-	300	13508379	-	MPN640	-	hypothetical protein
642	 31.41	-1	767297..768127	-	276	13508380	-	MPN641	-	hypothetical protein
643	 32.26	-1	768130..768969	-	279	13508381	-	MPN642	-	hypothetical protein
644	 31.24	-1	768969..769877	-	302	13508382	-	MPN643	-	hypothetical protein
645	 32.28	-1	769798..770649	-	283	13508383	-	MPN644	-	hypothetical protein
646	 33.57	-1	770652..771503	-	283	13508384	-	MPN645	-	hypothetical protein
647	 32.25	-1	771503..772336	-	277	13508385	-	MPN646	-	hypothetical protein
648	 36.20	0	772359..773231	-	290	13508386	-	MPN647	-	hypothetical protein
649	 28.95	-2	773342..773752	-	136	13508387	-	MPN648	-	hypothetical protein
650	 30.90	-1	774639..775049	-	136	13508388	-	MPN649	-	hypothetical protein
651	 32.68	-1	775034..775339	-	101	13508389	-	MPN650	-	hypothetical protein
652	 34.65	-1	776337..777476	+	379	13508390	mtlA	MPN651	-	mannitol-specific PRS EIIBC
653	 29.50	-2	777463..778557	+	364	13508391	mtlD	MPN652	-	mannitol-1-phosphate 5-dehydrogenase
654	 30.09	-2	778538..778969	+	143	13508392	mtlF	MPN653	-	PTS system mannitol-specific component IIA (EIIA-MTL)
655	 33.59	-1	779342..779731	-	129	13508393	-	MPN654	-	hypothetical protein
656	 37.24	0	780008..780622	+	204	13508394	-	MPN655	-	hypothetical protein
657	 37.25	0	781095..781910	-	271	13508395	rbgA	MPN656	-	ribosomal biogenesis GTPase
658	 40.13	0	781879..783084	-	401	13508396	-	MPN657	-	hypothetical protein
659	 36.39	0	783100..783459	-	119	13508397	rplS	MPN658	-	50S ribosomal protein L19
660	 39.97	0	783443..784075	-	210	13508398	trmD	MPN659	-	tRNA (guanine-N1)-methyltransferase
661	 38.60	0	784141..784425	-	94	161723287	rpsP	MPN660	-	30S ribosomal protein S16
662	 41.33	0	784489..786138	-	549	13508400	K05_orf499	MPN661	-	hypothetical protein
663	 44.96	0	786139..786594	-	151	13508401	pilB	MPN662	-	methionine sulfoxide reductase B
664	 39.01	0	786558..787262	-	234	13508402	-	MPN663	-	hypothetical protein
665	 43.56	0	787269..787982	-	237	13508403	degV	MPN664	-	hypothetical protein
666	 44.81	0	788141..789325	-	394	13508404	tuf	MPN665	-	elongation factor Tu
667	 37.17	0	789410..790165	+	251	13508405	-	MPN666	-	hypothetical protein
668	 42.58	0	790153..791028	+	291	13508406	gtaB	MPN667	-	UDP-glucose pyrophosphorylase
669	 47.04	+1	791025..791447	-	140	13508407	osmC	MPN668	-	hypothetical protein
670	 43.42	0	791473..792672	+	399	13508408	tyrS	MPN669	-	tyrosyl tRNA synthetase
671	 38.05	0	792712..793749	-	345	13508409	-	MPN670	-	hypothetical protein
672	 45.12	+1	794302..796431	-	709	13508410	ftsH	MPN671	-	cell division protein FtsH
673	 40.53	0	796612..797139	-	175	13508411	hpt	MPN672	-	hypoxanthine-guanine phosphoribosyltransferase
674	 39.80	0	797139..797648	-	169	13508412	-	MPN673	-	hypothetical protein
675	 42.39	0	797819..798757	+	312	13508413	ldh	MPN674	-	L-lactate dehydrogenase
676	 34.31	-1	799162..799467	-	101	13508414	-	MPN675	-	hypothetical protein
677	 37.69	0	799858..800178	+	106	13508415	K05_orf106	MPN676	-	hypothetical protein
678	 39.98	0	800735..802012	-	425	13508416	-	MPN677	-	ATPase
679	 43.30	0	801993..803447	-	484	13508417	gltX	MPN678	-	glutamyl-tRNA synthetase
680	 41.79	0	803434..804225	-	263	13508418	ksgA	MPN679	-	dimethyladenosine transferase
681	 41.80	0	804218..805375	-	385	13508419	-	MPN680	-	putative inner membrane protein translocase component YidC
682	 42.02	0	805356..805712	-	118	13508420	rnpA	MPN681	-	RNaseP C5 chain
683	 42.86	0	805702..805848	-	48	13508421	rpmH	MPN682	-	50S ribosomal protein L34
684	 43.53	0	805871..806890	-	339	13508422	devA	MPN683	-	ABC transporter subunit
685	 41.90	0	806892..812540	-	1882	13508423	-	MPN684	-	suggestion: membrane transporter component
686	 40.58	0	812546..813400	-	284	13508424	cysA	MPN685	-	sulfate transport ATP-binding protein
687	 39.70	0	813468..814787	-	439	13508425	dnaA	MPN686	-	chromosomal replication initiation protein
688	 41.30	0	814787..815539	-	250	13508426	-	MPN687	-	hypothetical protein
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.