IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
558	 41.71	0	677332..679170	+	612	13508296	gidA	MPN557	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
559	 37.15	0	679163..679738	+	191	13508297	gidB	MPN558	-	methyltransferase GidB
560	 37.01	0	679692..680399	+	235	13508298	-	MPN559	-	hypothetical protein
561	 39.79	0	680477..681793	-	438	13508299	arcA	MPN560	-	arginine deiminase
562	 41.59	0	681847..682488	+	213	13508300	udk	MPN561	-	uridine kinase
563	 44.31	0	682485..683231	-	248	13508301	outB	MPN562	-	NH(3)-dependent NAD(+) synthetase
564	 44.39	0	683224..684525	-	433	13508302	obgE	MPN563	-	GTPase ObgE
565	 43.18	0	684729..685784	-	351	13508303	adh	MPN564	-	NADP-dependent alcohol dehydrogenase
566	 36.60	0	685998..686456	-	152	13508304	-	MPN565	-	hypothetical protein
567	 35.99	0	686626..687339	-	237	13508305	glpQ	MPN566	-	Glpq or Uplq glycerophosphoryl diester phosphodiesterase
568	 39.86	0	687343..690453	-	1036	13508306	P200	MPN567	-	cyto adherence proteins
569	 37.56	0	690553..691428	-	291	13508307	spg	MPN568	-	small GTPase Era involved in regulating metabolism and cell division
570	 40.37	0	691416..691742	-	108	13508308	-	MPN569	-	metalloenzyme interacting with hemolysin
571	 33.85	-1	691864..692253	-	129	13508309	-	MPN570	-	hypothetical protein
572	 37.82	0	692255..694237	-	660	13508310	lcnDR3	MPN571	-	hemolysin ABC-type exporter
573	 43.50	0	694341..695678	-	445	13508311	-	MPN572	-	leucyl aminopeptidase
574	 42.83	0	695692..697323	-	543	13508312	groEL	MPN573	-	chaperonin GroEL
575	 37.61	0	697326..697676	-	116	13508313	groES	MPN574	-	co-chaperonin GroES
576	 37.98	0	697864..698250	-	128	13508314	-	MPN575	-	hypothetical protein
577	 42.26	0	698685..699905	-	406	13508315	glyA	MPN576	-	serine hydroxymethyltransferase
578	 40.92	0	700067..701107	-	346	13508316	-	MPN577	-	hypothetical protein
579	 43.23	0	701545..701847	+	100	13508317	-	MPN578	-	hypothetical protein
580	 34.85	-1	701863..702192	-	109	13508318	-	MPN579	-	hypothetical protein
581	 39.95	0	702334..702756	-	140	13508319	-	MPN580	-	hypothetical protein
582	 38.60	0	702824..703621	-	265	13508320	-	MPN581	-	hypothetical protein
583	 36.89	0	703797..705116	-	439	13508321	-	MPN582	-	hypothetical protein
584	 36.73	0	705554..706231	-	225	13508322	-	MPN583	-	hypothetical protein
585	 35.29	-1	706735..707142	-	135	13508323	-	MPN584	-	hypothetical protein
586	 33.88	-1	707204..708112	-	302	13508324	-	MPN585	-	hypothetical protein
587	 35.63	0	708186..709229	-	347	13508325	-	MPN586	-	hypothetical protein
588	 37.53	0	709105..709557	-	150	13508326	-	MPN587	-	hypothetical protein
589	 38.47	0	709615..711210	-	531	13508327	-	MPN588	-	hypothetical protein
590	 36.50	0	711423..711896	-	157	13508328	-	MPN589	-	hypothetical protein
591	 35.93	0	712037..712690	-	217	13508329	-	MPN590	-	hypothetical protein
592	 39.17	0	712847..713908	-	353	13508330	-	MPN591	-	hypothetical protein
593	 38.57	0	714431..715996	-	521	13508331	-	MPN592	-	hypothetical protein
594	 35.23	-1	716097..716465	-	122	13508332	-	MPN593	-	hypothetical protein
595	 37.67	0	716691..717059	-	122	13508333	-	MPN594	-	hypothetical protein
596	 42.27	0	716977..717435	-	152	13508334	lacA	MPN595	-	ribose-5-phosphate isomerase B
597	 35.85	0	717435..719144	-	569	13508335	-	MPN596	-	hypothetical protein
598	 42.04	0	719144..719545	-	133	13508336	atpC	MPN597	-	F0F1 ATP synthase subunit epsilon
599	 47.41	+1	719548..720975	-	475	13508337	atpD	MPN598	-	F0F1 ATP synthase subunit beta
600	 41.07	0	720975..721814	-	279	13508338	atpG	MPN599	-	F0F1 ATP synthase subunit gamma
601	 45.34	+1	721814..723370	-	518	13508339	atpA	MPN600	-	F0F1 ATP synthase subunit alpha
602	 38.36	0	723373..723909	-	178	13508340	atpH	MPN601	-	F0F1 ATP synthase subunit delta
603	 41.51	0	723902..724525	-	207	13508341	atpF	MPN602	-	F0F1 ATP synthase subunit B
604	 44.97	0	724528..724845	-	105	13508342	atpE	MPN603	-	F0F1 ATP synthase subunit C
605	 40.70	0	724848..725729	-	293	13508343	atpB	MPN604	-	F0F1 ATP synthase subunit A
606	 36.08	0	725695..726168	-	157	13508344	-	MPN605	-	hypothetical protein
607	 42.89	0	726174..727544	-	456	13508345	eno	MPN606	-	phosphopyruvate hydratase
608	 39.87	0	727599..728072	+	157	13508346	pmsR	MPN607	-	methionine sulfoxide reductase A
609	 35.84	0	728069..728746	-	225	13508347	phoU	MPN608	-	phosphate transport system regulatory protein
610	 38.48	0	728749..729738	-	329	13508348	pstB	MPN609	-	phosphate specific
611	 38.80	0	729723..731678	-	651	13508349	pstA	MPN610	-	Psta /Pstc-like ABC transporter; phosphate specific
612	 39.72	0	731678..732835	-	385	13508350	-	MPN611	-	phosphate binding protein Psts
613	 34.27	-1	733077..736070	-	997	13508351	-	MPN612	-	hypothetical protein
614	 32.75	-1	736185..737219	-	344	13508352	-	MPN613	-	hypothetical protein
615	 30.95	-1	737155..738159	-	334	13508353	-	MPN614	-	hypothetical protein
616	 34.93	-1	738245..738994	-	249	13508354	hsdS	MPN615	-	hypothetical protein
617	 40.85	0	739424..739822	-	132	13508355	rpsI	MPN616	-	30S ribosomal protein S9
618	 40.82	0	739828..740268	-	146	13508356	rplM	MPN617	-	50S ribosomal protein L13
619	 40.37	0	740299..742344	-	681	13508357	dnaX	MPN618	-	gamma-like
620	 42.47	0	742353..745199	-	948	13508358	uvrA	MPN619	-	excinuclease ABC subunit A
621	 37.70	0	745177..747696	-	839	13508359	-	MPN620	-	hypothetical protein
622	 42.23	0	747742..749427	-	561	13508360	-	MPN621	-	metallo hydrolase
623	 40.61	0	749432..749692	-	86	13508361	rpsO	MPN622	-	30S ribosomal protein S15
624	 41.91	0	749850..751202	+	450	13508362	deaD	MPN623	-	ATP-dependent RNA helicase deaD
625	 44.44	0	751224..751421	+	65	13508363	rpmB	MPN624	-	50S ribosomal protein L28
626	 44.13	0	751465..751890	+	141	13508364	-	MPN625	-	osmotical inducible protein C-like protein
627	 38.92	0	752025..752543	+	172	13508365	-	MPN626	-	hypothetical protein
628	 44.39	0	752540..754258	-	572	13508366	ptsI	MPN627	-	PEP-dependent HPr protein kinase phosphoryltransferase (enzyme I)
629	 44.14	0	754263..755789	-	508	13508367	pgm	MPN628	-	phosphoglyceromutase
630	 41.50	0	755782..756516	-	244	13508368	tim	MPN629	-	triosephosphate isomerase
631	 40.66	0	756569..757783	-	404	13508369	yfiB	MPN630	-	hypothetical protein
632	 40.25	0	757870..758766	+	298	13508370	tsf	MPN631	-	elongation factor Ts
633	 42.23	0	758768..759475	+	235	13508371	pyrH	MPN632	-	uridylate kinase
634	 37.23	0	759578..760321	+	247	13508372	-	MPN633	-	hypothetical protein
635	 34.25	-1	760403..760948	+	181	13508373	-	MPN634	-	hypothetical protein
636	 33.52	-1	761504..762562	+	352	13508374	-	MPN635	-	hypothetical protein
637	 36.94	0	762639..763193	+	184	13508375	frr	MPN636	-	ribosome releasing factor
638	 36.45	0	763193..764380	+	395	13508376	cdsA	MPN637	-	CDP-diglyceride synthetase
639	 37.77	0	764400..765527	+	375	13508377	-	MPN638	-	K family restriction enzyme specificity determining subunit
640	 37.50	0	765524..766387	-	287	13508378	-	MPN639	-	hypothetical protein
641	 33.33	-1	766395..767297	-	300	13508379	-	MPN640	-	hypothetical protein
642	 31.41	-1	767297..768127	-	276	13508380	-	MPN641	-	hypothetical protein
643	 32.26	-1	768130..768969	-	279	13508381	-	MPN642	-	hypothetical protein
644	 31.24	-1	768969..769877	-	302	13508382	-	MPN643	-	hypothetical protein
645	 32.28	-1	769798..770649	-	283	13508383	-	MPN644	-	hypothetical protein
646	 33.57	-1	770652..771503	-	283	13508384	-	MPN645	-	hypothetical protein
647	 32.25	-1	771503..772336	-	277	13508385	-	MPN646	-	hypothetical protein
648	 36.20	0	772359..773231	-	290	13508386	-	MPN647	-	hypothetical protein
649	 28.95	-2	773342..773752	-	136	13508387	-	MPN648	-	hypothetical protein
650	 30.90	-1	774639..775049	-	136	13508388	-	MPN649	-	hypothetical protein
651	 32.68	-1	775034..775339	-	101	13508389	-	MPN650	-	hypothetical protein
652	 34.65	-1	776337..777476	+	379	13508390	mtlA	MPN651	-	mannitol-specific PRS EIIBC
653	 29.50	-2	777463..778557	+	364	13508391	mtlD	MPN652	-	mannitol-1-phosphate 5-dehydrogenase
654	 30.09	-2	778538..778969	+	143	13508392	mtlF	MPN653	-	PTS system mannitol-specific component IIA (EIIA-MTL)
655	 33.59	-1	779342..779731	-	129	13508393	-	MPN654	-	hypothetical protein
656	 37.24	0	780008..780622	+	204	13508394	-	MPN655	-	hypothetical protein
657	 37.25	0	781095..781910	-	271	13508395	rbgA	MPN656	-	ribosomal biogenesis GTPase
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.