IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
524	 35.11	-1	645545..646051	-	168	13508263	-	MPN524	-	hypothetical protein
525	 35.35	-1	646644..647885	+	413	13508264	-	MPN525	-	hypothetical protein
526	 30.50	-2	647866..648852	+	328	13508265	-	MPN526	-	hypothetical protein
527	 35.84	0	649107..649784	-	225	13508266	-	MPN527	-	putative membrane integrated oxidoreductase
528	 37.12	0	649839..650393	+	184	13508267	ppa	MPN528	-	inorganic pyrophosphatase
529	 34.68	-1	650402..650920	+	172	13508428	-	MPN528a	-	penicillin-binding protein-related factor A, putative recombinase
530	 37.27	0	650917..651246	-	109	13508268	-	MPN529	-	histone like protein
531	 34.55	-1	651395..651805	+	136	13508269	-	MPN530	-	hypothetical protein
532	 38.04	0	651802..653949	-	715	13508270	clpB	MPN531	-	ATP-dependent protease binding subunit ClpB
533	 38.16	0	654125..654973	-	282	13508271	licA	MPN532	-	choline kinase
534	 40.58	0	654981..656153	-	390	13508272	ackA	MPN533	-	acetate kinase
535	 33.57	-1	656494..656916	+	140	13508273	-	MPN534	-	hypothetical protein
536	 37.84	0	656922..657542	+	206	13508274	ruvA	MPN535	-	Holliday junction DNA helicase motor protein
537	 41.88	0	657517..658440	+	307	13508275	ruvB	MPN536	-	Holliday junction DNA helicase B
538	 41.16	0	658426..659664	-	412	13508276	mucB	MPN537	-	UV protection protein MucB
539	 40.12	0	659782..660267	+	161	13508277	rplJ	MPN538	-	50S ribosomal protein L10
540	 39.30	0	660305..660673	+	122	13508278	rplL	MPN539	-	50S ribosomal protein L7/L12
541	 44.83	0	660680..660853	+	57	13508279	rpmF	MPN540	-	50S ribosomal protein L32
542	 34.85	-1	660863..661126	-	87	13508280	rpsT	MPN541	-	30S ribosomal protein S20
543	 39.42	0	661187..661843	+	218	13508281	-	MPN542	-	hypothetical protein
544	 37.93	0	661848..662783	+	311	13508282	fmt	MPN543	-	methionyl-tRNA formyltransferase
545	 33.58	-1	662783..664777	+	664	13508283	-	MPN544	-	hypothetical protein
546	 35.22	-1	664761..665609	-	282	13508284	rnc	MPN545	-	ribonuclease III
547	 39.31	0	665599..666585	-	328	13508285	plsX	MPN546	-	putative glycerol-3-phosphate acyltransferase PlsX
548	 39.53	0	666585..668261	-	558	13508286	-	MPN547	-	dihydroacetone kinase
549	 38.23	0	668316..669296	-	326	13508287	-	MPN548	-	pseudouridine synthase
550	 40.39	0	669283..670260	-	325	13508288	-	MPN549	-	phosphodiesterase
551	 39.18	0	670253..671416	-	387	13508289	-	MPN550	-	thiamin biosynthesis protein
552	 37.83	0	671403..672248	-	281	13508290	-	MPN551	-	hypothetical protein
553	 37.28	0	672255..673064	-	269	13508291	-	MPN552	-	hypothetical protein
554	 39.35	0	673057..674751	-	564	13508292	thrSv	MPN553	-	threonyl-tRNA synthetase
555	 35.87	0	674751..675065	-	104	13508293	-	MPN554	-	hypothetical protein
556	 39.00	0	675067..675648	-	193	13508294	-	MPN555	-	hypothetical protein
557	 40.77	0	675691..677304	-	537	13508295	argS	MPN556	-	arginyl-tRNA synthetase
558	 41.71	0	677332..679170	+	612	13508296	gidA	MPN557	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
559	 37.15	0	679163..679738	+	191	13508297	gidB	MPN558	-	methyltransferase GidB
560	 37.01	0	679692..680399	+	235	13508298	-	MPN559	-	hypothetical protein
561	 39.79	0	680477..681793	-	438	13508299	arcA	MPN560	-	arginine deiminase
562	 41.59	0	681847..682488	+	213	13508300	udk	MPN561	-	uridine kinase
563	 44.31	0	682485..683231	-	248	13508301	outB	MPN562	-	NH(3)-dependent NAD(+) synthetase
564	 44.39	0	683224..684525	-	433	13508302	obgE	MPN563	-	GTPase ObgE
565	 43.18	0	684729..685784	-	351	13508303	adh	MPN564	-	NADP-dependent alcohol dehydrogenase
566	 36.60	0	685998..686456	-	152	13508304	-	MPN565	-	hypothetical protein
567	 35.99	0	686626..687339	-	237	13508305	glpQ	MPN566	-	Glpq or Uplq glycerophosphoryl diester phosphodiesterase
568	 39.86	0	687343..690453	-	1036	13508306	P200	MPN567	-	cyto adherence proteins
569	 37.56	0	690553..691428	-	291	13508307	spg	MPN568	-	small GTPase Era involved in regulating metabolism and cell division
570	 40.37	0	691416..691742	-	108	13508308	-	MPN569	-	metalloenzyme interacting with hemolysin
571	 33.85	-1	691864..692253	-	129	13508309	-	MPN570	-	hypothetical protein
572	 37.82	0	692255..694237	-	660	13508310	lcnDR3	MPN571	-	hemolysin ABC-type exporter
573	 43.50	0	694341..695678	-	445	13508311	-	MPN572	-	leucyl aminopeptidase
574	 42.83	0	695692..697323	-	543	13508312	groEL	MPN573	-	chaperonin GroEL
575	 37.61	0	697326..697676	-	116	13508313	groES	MPN574	-	co-chaperonin GroES
576	 37.98	0	697864..698250	-	128	13508314	-	MPN575	-	hypothetical protein
577	 42.26	0	698685..699905	-	406	13508315	glyA	MPN576	-	serine hydroxymethyltransferase
578	 40.92	0	700067..701107	-	346	13508316	-	MPN577	-	hypothetical protein
579	 43.23	0	701545..701847	+	100	13508317	-	MPN578	-	hypothetical protein
580	 34.85	-1	701863..702192	-	109	13508318	-	MPN579	-	hypothetical protein
581	 39.95	0	702334..702756	-	140	13508319	-	MPN580	-	hypothetical protein
582	 38.60	0	702824..703621	-	265	13508320	-	MPN581	-	hypothetical protein
583	 36.89	0	703797..705116	-	439	13508321	-	MPN582	-	hypothetical protein
584	 36.73	0	705554..706231	-	225	13508322	-	MPN583	-	hypothetical protein
585	 35.29	-1	706735..707142	-	135	13508323	-	MPN584	-	hypothetical protein
586	 33.88	-1	707204..708112	-	302	13508324	-	MPN585	-	hypothetical protein
587	 35.63	0	708186..709229	-	347	13508325	-	MPN586	-	hypothetical protein
588	 37.53	0	709105..709557	-	150	13508326	-	MPN587	-	hypothetical protein
589	 38.47	0	709615..711210	-	531	13508327	-	MPN588	-	hypothetical protein
590	 36.50	0	711423..711896	-	157	13508328	-	MPN589	-	hypothetical protein
591	 35.93	0	712037..712690	-	217	13508329	-	MPN590	-	hypothetical protein
592	 39.17	0	712847..713908	-	353	13508330	-	MPN591	-	hypothetical protein
593	 38.57	0	714431..715996	-	521	13508331	-	MPN592	-	hypothetical protein
594	 35.23	-1	716097..716465	-	122	13508332	-	MPN593	-	hypothetical protein
595	 37.67	0	716691..717059	-	122	13508333	-	MPN594	-	hypothetical protein
596	 42.27	0	716977..717435	-	152	13508334	lacA	MPN595	-	ribose-5-phosphate isomerase B
597	 35.85	0	717435..719144	-	569	13508335	-	MPN596	-	hypothetical protein
598	 42.04	0	719144..719545	-	133	13508336	atpC	MPN597	-	F0F1 ATP synthase subunit epsilon
599	 47.41	+1	719548..720975	-	475	13508337	atpD	MPN598	-	F0F1 ATP synthase subunit beta
600	 41.07	0	720975..721814	-	279	13508338	atpG	MPN599	-	F0F1 ATP synthase subunit gamma
601	 45.34	+1	721814..723370	-	518	13508339	atpA	MPN600	-	F0F1 ATP synthase subunit alpha
602	 38.36	0	723373..723909	-	178	13508340	atpH	MPN601	-	F0F1 ATP synthase subunit delta
603	 41.51	0	723902..724525	-	207	13508341	atpF	MPN602	-	F0F1 ATP synthase subunit B
604	 44.97	0	724528..724845	-	105	13508342	atpE	MPN603	-	F0F1 ATP synthase subunit C
605	 40.70	0	724848..725729	-	293	13508343	atpB	MPN604	-	F0F1 ATP synthase subunit A
606	 36.08	0	725695..726168	-	157	13508344	-	MPN605	-	hypothetical protein
607	 42.89	0	726174..727544	-	456	13508345	eno	MPN606	-	phosphopyruvate hydratase
608	 39.87	0	727599..728072	+	157	13508346	pmsR	MPN607	-	methionine sulfoxide reductase A
609	 35.84	0	728069..728746	-	225	13508347	phoU	MPN608	-	phosphate transport system regulatory protein
610	 38.48	0	728749..729738	-	329	13508348	pstB	MPN609	-	phosphate specific
611	 38.80	0	729723..731678	-	651	13508349	pstA	MPN610	-	Psta /Pstc-like ABC transporter; phosphate specific
612	 39.72	0	731678..732835	-	385	13508350	-	MPN611	-	phosphate binding protein Psts
613	 34.27	-1	733077..736070	-	997	13508351	-	MPN612	-	hypothetical protein
614	 32.75	-1	736185..737219	-	344	13508352	-	MPN613	-	hypothetical protein
615	 30.95	-1	737155..738159	-	334	13508353	-	MPN614	-	hypothetical protein
616	 34.93	-1	738245..738994	-	249	13508354	hsdS	MPN615	-	hypothetical protein
617	 40.85	0	739424..739822	-	132	13508355	rpsI	MPN616	-	30S ribosomal protein S9
618	 40.82	0	739828..740268	-	146	13508356	rplM	MPN617	-	50S ribosomal protein L13
619	 40.37	0	740299..742344	-	681	13508357	dnaX	MPN618	-	gamma-like
620	 42.47	0	742353..745199	-	948	13508358	uvrA	MPN619	-	excinuclease ABC subunit A
621	 37.70	0	745177..747696	-	839	13508359	-	MPN620	-	hypothetical protein
622	 42.23	0	747742..749427	-	561	13508360	-	MPN621	-	metallo hydrolase
623	 40.61	0	749432..749692	-	86	13508361	rpsO	MPN622	-	30S ribosomal protein S15
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.