IslandPathversion 1.0

IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.26 STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
476	 44.80	0	580759..581412	-	217	13508215	cmk	MPN476	-	cytidylate kinase
477	 40.79	0	581439..582068	-	209	13508216	-	MPN477	-	hypothetical protein
478	 41.38	0	582071..582778	-	235	13508217	-	MPN478	-	hypothetical protein
479	 42.09	0	582782..583375	-	197	13508218	-	MPN479	-	acyl carrier protein phosphodiesterase
480	 42.87	0	583403..585919	-	838	13508219	valS	MPN480	-	valyl-tRNA synthetase
481	 39.52	0	585903..586484	-	193	13508220	yihA	MPN481	-	GTPase EngB
482	 36.92	0	586492..586686	-	64	13508221	-	MPN482	-	hypothetical protein
483	 37.13	0	586772..587797	+	341	13508222	yibD	MPN483	-	bifunctional threonine dehydrogenase; galactosyltransferase
484	 34.94	-1	588302..588613	-	103	13508223	-	MPN484	-	hypothetical protein
485	 50.05	+2	589030..589980	-	316	13508224	-	MPN485	-	species specific lipoprotein
486	 51.80	+2	589922..590365	+	147	13508225	-	MPN486	-	hypothetical protein
487	 41.08	0	590569..591795	+	408	13508226	nifS	MPN487	-	putative cysteine desulfurase
488	 39.72	0	591798..592220	+	140	13508227	-	MPN488	-	NifU-like protein
489	 45.96	+1	592398..596300	-	1300	13508228	-	MPN489	-	species specific lipoprotein
490	 45.50	+1	596816..597826	-	336	13508229	recA	MPN490	-	recombinase A
491	 41.05	0	597900..599324	+	474	13508230	-	MPN491	-	membrane nuclease
492	 40.52	0	599463..600380	-	305	13508231	yjfW	MPN492	-	L-xylulose 5-phosphate 3-epimerase
493	 44.75	0	600316..600972	-	218	13508232	ulaD	MPN493	-	3-keto-L-gulonate-6-phosphate decarboxylase
494	 45.42	+1	600974..601453	-	159	13508233	yjfU	MPN494	-	phosphotransferase protein II, component A, for pentitol, SGAT-like protein
495	 42.01	0	601455..601742	-	95	13508234	-	MPN495	-	PTS system: EIIB
496	 41.50	0	601745..603727	-	660	13508235	ulaA	MPN496	-	ascorbate-specific PTS system enzyme IIC
497	 46.99	+1	604155..604586	-	143	13508236	-	MPN497	-	phosphotriesterase
498	 41.70	0	604897..605625	+	242	13508237	araD	MPN498	-	L-ribulose-5-phosphate 4-epimerase
499	 40.85	0	605579..606070	+	163	13508238	-	MPN499	-	hypothetical protein
500	 55.11	+2	606218..607801	+	527	13508239	-	MPN500	-	hypothetical protein
501	 35.87	0	608167..608757	+	196	13508240	-	MPN501	-	hypothetical protein
502	 55.48	+2	609202..610470	+	422	13508241	-	MPN502	-	hypothetical protein
503	 52.79	+2	611025..612170	+	381	13508242	-	MPN503	-	cytadherence family protein
504	 34.12	-1	612740..613120	+	126	13508243	-	MPN504	-	hypothetical protein
505	 30.31	-2	613188..613949	-	253	13508244	-	MPN505	-	hypothetical protein
506	 35.31	-1	614865..617246	+	793	13508245	-	MPN506	-	hypothetical protein
507	 32.88	-1	617366..618457	+	363	13508246	-	MPN507	-	type I restriction enzyme ecokI specificity protein (hsdS)-like protein
508	 34.44	-1	618485..620014	-	509	13508247	-	MPN508	-	membrane export protein family protein
509	 35.90	0	620561..621844	-	427	13508248	-	MPN509	-	membrane export protein family protein
510	 39.29	0	622874..624250	-	458	13508249	-	MPN510	-	membrane export protein family protein
511	 36.91	0	624862..625644	-	260	13508250	-	MPN511	-	membrane export protein family protein
512	 38.71	0	625675..626139	-	154	13508251	-	MPN512	-	membrane export protein family protein
513	 39.51	0	626917..627369	-	150	13508252	-	MPN513	-	hypothetical protein
514	 40.22	0	627886..628248	-	120	13508253	-	MPN514	-	hypothetical protein
515	 46.35	+1	628410..632282	-	1290	13508254	rpoC	MPN515	-	DNA-directed RNA polymerase subunit beta'
516	 43.80	0	632286..636461	-	1391	13508255	rpoB	MPN516	-	DNA-directed RNA polymerase subunit beta
517	 37.52	0	636554..637054	-	166	13508256	-	MPN517	-	suggest reductase homologue
518	 33.72	-1	638147..639193	-	348	13508257	-	MPN518	-	hypothetical protein
519	 36.26	0	639196..640014	-	272	13508258	lip3	MPN519	-	triacylglycerol lipase (lip) 3
520	 38.55	0	640132..642717	-	861	13508259	ileS	MPN520	-	isoleucyl-tRNA synthetase
521	 38.32	0	642760..643260	+	166	13508260	ygl3	MPN521	-	putative rRNA methylase
522	 37.91	0	643251..643883	+	210	13508261	-	MPN522	-	methyltransferase
523	 37.36	0	644038..644955	-	305	13508262	-	MPN523	-	membrane component, STARP antigen
524	 35.11	-1	645545..646051	-	168	13508263	-	MPN524	-	hypothetical protein
525	 35.35	-1	646644..647885	+	413	13508264	-	MPN525	-	hypothetical protein
526	 30.50	-2	647866..648852	+	328	13508265	-	MPN526	-	hypothetical protein
527	 35.84	0	649107..649784	-	225	13508266	-	MPN527	-	putative membrane integrated oxidoreductase
528	 37.12	0	649839..650393	+	184	13508267	ppa	MPN528	-	inorganic pyrophosphatase
529	 34.68	-1	650402..650920	+	172	13508428	-	MPN528a	-	penicillin-binding protein-related factor A, putative recombinase
530	 37.27	0	650917..651246	-	109	13508268	-	MPN529	-	histone like protein
531	 34.55	-1	651395..651805	+	136	13508269	-	MPN530	-	hypothetical protein
532	 38.04	0	651802..653949	-	715	13508270	clpB	MPN531	-	ATP-dependent protease binding subunit ClpB
533	 38.16	0	654125..654973	-	282	13508271	licA	MPN532	-	choline kinase
534	 40.58	0	654981..656153	-	390	13508272	ackA	MPN533	-	acetate kinase
535	 33.57	-1	656494..656916	+	140	13508273	-	MPN534	-	hypothetical protein
536	 37.84	0	656922..657542	+	206	13508274	ruvA	MPN535	-	Holliday junction DNA helicase motor protein
537	 41.88	0	657517..658440	+	307	13508275	ruvB	MPN536	-	Holliday junction DNA helicase B
538	 41.16	0	658426..659664	-	412	13508276	mucB	MPN537	-	UV protection protein MucB
539	 40.12	0	659782..660267	+	161	13508277	rplJ	MPN538	-	50S ribosomal protein L10
540	 39.30	0	660305..660673	+	122	13508278	rplL	MPN539	-	50S ribosomal protein L7/L12
541	 44.83	0	660680..660853	+	57	13508279	rpmF	MPN540	-	50S ribosomal protein L32
542	 34.85	-1	660863..661126	-	87	13508280	rpsT	MPN541	-	30S ribosomal protein S20
543	 39.42	0	661187..661843	+	218	13508281	-	MPN542	-	hypothetical protein
544	 37.93	0	661848..662783	+	311	13508282	fmt	MPN543	-	methionyl-tRNA formyltransferase
545	 33.58	-1	662783..664777	+	664	13508283	-	MPN544	-	hypothetical protein
546	 35.22	-1	664761..665609	-	282	13508284	rnc	MPN545	-	ribonuclease III
547	 39.31	0	665599..666585	-	328	13508285	plsX	MPN546	-	putative glycerol-3-phosphate acyltransferase PlsX
548	 39.53	0	666585..668261	-	558	13508286	-	MPN547	-	dihydroacetone kinase
549	 38.23	0	668316..669296	-	326	13508287	-	MPN548	-	pseudouridine synthase
550	 40.39	0	669283..670260	-	325	13508288	-	MPN549	-	phosphodiesterase
551	 39.18	0	670253..671416	-	387	13508289	-	MPN550	-	thiamin biosynthesis protein
552	 37.83	0	671403..672248	-	281	13508290	-	MPN551	-	hypothetical protein
553	 37.28	0	672255..673064	-	269	13508291	-	MPN552	-	hypothetical protein
554	 39.35	0	673057..674751	-	564	13508292	thrSv	MPN553	-	threonyl-tRNA synthetase
555	 35.87	0	674751..675065	-	104	13508293	-	MPN554	-	hypothetical protein
556	 39.00	0	675067..675648	-	193	13508294	-	MPN555	-	hypothetical protein
557	 40.77	0	675691..677304	-	537	13508295	argS	MPN556	-	arginyl-tRNA synthetase
558	 41.71	0	677332..679170	+	612	13508296	gidA	MPN557	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
559	 37.15	0	679163..679738	+	191	13508297	gidB	MPN558	-	methyltransferase GidB
560	 37.01	0	679692..680399	+	235	13508298	-	MPN559	-	hypothetical protein
561	 39.79	0	680477..681793	-	438	13508299	arcA	MPN560	-	arginine deiminase
562	 41.59	0	681847..682488	+	213	13508300	udk	MPN561	-	uridine kinase
563	 44.31	0	682485..683231	-	248	13508301	outB	MPN562	-	NH(3)-dependent NAD(+) synthetase
564	 44.39	0	683224..684525	-	433	13508302	obgE	MPN563	-	GTPase ObgE
565	 43.18	0	684729..685784	-	351	13508303	adh	MPN564	-	NADP-dependent alcohol dehydrogenase
566	 36.60	0	685998..686456	-	152	13508304	-	MPN565	-	hypothetical protein
567	 35.99	0	686626..687339	-	237	13508305	glpQ	MPN566	-	Glpq or Uplq glycerophosphoryl diester phosphodiesterase
568	 39.86	0	687343..690453	-	1036	13508306	P200	MPN567	-	cyto adherence proteins
569	 37.56	0	690553..691428	-	291	13508307	spg	MPN568	-	small GTPase Era involved in regulating metabolism and cell division
570	 40.37	0	691416..691742	-	108	13508308	-	MPN569	-	metalloenzyme interacting with hemolysin
571	 33.85	-1	691864..692253	-	129	13508309	-	MPN570	-	hypothetical protein
572	 37.82	0	692255..694237	-	660	13508310	lcnDR3	MPN571	-	hemolysin ABC-type exporter
573	 43.50	0	694341..695678	-	445	13508311	-	MPN572	-	leucyl aminopeptidase
574	 42.83	0	695692..697323	-	543	13508312	groEL	MPN573	-	chaperonin GroEL
575	 37.61	0	697326..697676	-	116	13508313	groES	MPN574	-	co-chaperonin GroES
40.26	MEAN

4.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.