IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
439	 35.29	-1	531949..532662	-	237	13508178	-	MPN439	-	hypothetical protein
440	 37.05	0	532818..534998	-	726	13508179	-	MPN440	-	hypothetical protein
441	 43.37	0	535468..535776	+	102	13508180	-	MPN441	-	hypothetical protein
442	 42.16	0	536089..536541	-	150	13508181	-	MPN442	-	species specific lipoprotein
443	 41.95	0	536526..537755	-	409	13508182	deaD	MPN443	-	RNA helicase, eIF4-A translation initiation factor
444	 40.50	0	537762..541739	-	1325	13508183	-	MPN444	-	hypothetical protein
445	 41.84	0	541734..542603	+	289	13508184	lip3	MPN445	-	triacylglycerol lipase (lip) 3
446	 45.47	+1	542664..543281	-	205	13508185	rpsD	MPN446	-	30S ribosomal protein S4
447	 42.56	0	543304..546360	-	1018	13508186	hmw1	MPN447	-	cytadherence accessory protein HMW1
448	 39.86	0	546424..547281	-	285	13508187	-	MPN448	-	hypothetical protein
449	 40.31	0	547332..548678	-	448	13508188	orf8	MPN449	-	hypothetical protein
450	 41.38	0	548690..549634	-	314	13508189	orf7	MPN450	-	hypothetical protein
451	 39.82	0	549513..550622	-	369	13508190	come3	MPN451	-	competence protein
452	 47.35	+1	550662..552680	-	672	13508191	hmw3	MPN452	-	cytadherence accessory protein HMW3
453	 52.00	+2	552694..553518	-	274	13508192	-	MPN453	-	30K adhesin-related protein
454	 44.16	0	553539..554120	-	193	13508193	-	MPN454	-	hypothetical protein
455	 41.55	0	554209..555072	-	287	13508194	ctaD	MPN455	-	hypothetical protein
456	 43.11	0	555398..558415	-	1005	13508195	-	MPN456	-	hypothetical protein
457	 43.23	0	558798..559787	-	329	13508196	-	MPN457	-	hypothetical protein
458	 41.98	0	559729..560202	-	157	13508197	-	MPN458	-	hypothetical protein
459	 42.29	0	560123..561898	-	591	13508198	-	MPN459	-	hypothetical protein
460	 44.35	0	562658..564355	-	565	13508199	ktrB	MPN460	-	Trk-type K+ transport systems, membrane components
461	 42.53	0	564390..565085	+	231	13508200	ktrA	MPN461	-	KtrA, K+ Na+ uptake
462	 54.37	+2	565237..566049	+	270	13508201	-	MPN462	-	hypothetical protein
463	 53.38	+2	566124..566597	+	157	13508202	-	MPN463	-	hypothetical protein
464	 50.37	+2	566891..568228	+	445	13508203	-	MPN464	-	involved in cytadherence
465	 36.17	0	568645..569244	-	199	13508204	-	MPN465	-	hypothetical protein
466	 30.26	-2	569288..569710	-	140	13508205	-	MPN466	-	hypothetical protein
467	 31.37	-1	569740..570045	-	101	13508206	-	MPN467	-	hypothetical protein
468	 55.18	+2	570782..571408	+	208	13508207	-	MPN468	-	hypothetical protein
469	 39.62	0	572254..572985	-	243	13508208	-	MPN469	-	hypothetical protein
470	 43.29	0	573026..574090	-	354	13508209	pepX	MPN470	-	X-Pro dipeptidase
471	 37.65	0	574090..574251	-	53	13508210	rpmG	MPN471	-	50S ribosomal protein L33
472	 39.12	0	574270..575151	-	293	13508211	degV	MPN472	-	hypothetical protein
473	 40.52	0	575157..575963	-	268	13508212	lip2	MPN473	-	triacylglycerol lipase (lip) 2
474	 41.26	0	575950..579051	-	1033	13508213	-	MPN474	-	coiled coil protein, putative structural protein involved in cytosceleton
475	 42.81	0	579408..580757	-	449	13508214	engA	MPN475	-	GTP-binding protein EngA
476	 44.80	0	580759..581412	-	217	13508215	cmk	MPN476	-	cytidylate kinase
477	 40.79	0	581439..582068	-	209	13508216	-	MPN477	-	hypothetical protein
478	 41.38	0	582071..582778	-	235	13508217	-	MPN478	-	hypothetical protein
479	 42.09	0	582782..583375	-	197	13508218	-	MPN479	-	acyl carrier protein phosphodiesterase
480	 42.87	0	583403..585919	-	838	13508219	valS	MPN480	-	valyl-tRNA synthetase
481	 39.52	0	585903..586484	-	193	13508220	yihA	MPN481	-	GTPase EngB
482	 36.92	0	586492..586686	-	64	13508221	-	MPN482	-	hypothetical protein
483	 37.13	0	586772..587797	+	341	13508222	yibD	MPN483	-	bifunctional threonine dehydrogenase; galactosyltransferase
484	 34.94	-1	588302..588613	-	103	13508223	-	MPN484	-	hypothetical protein
485	 50.05	+2	589030..589980	-	316	13508224	-	MPN485	-	species specific lipoprotein
486	 51.80	+2	589922..590365	+	147	13508225	-	MPN486	-	hypothetical protein
487	 41.08	0	590569..591795	+	408	13508226	nifS	MPN487	-	putative cysteine desulfurase
488	 39.72	0	591798..592220	+	140	13508227	-	MPN488	-	NifU-like protein
489	 45.96	+1	592398..596300	-	1300	13508228	-	MPN489	-	species specific lipoprotein
490	 45.50	+1	596816..597826	-	336	13508229	recA	MPN490	-	recombinase A
491	 41.05	0	597900..599324	+	474	13508230	-	MPN491	-	membrane nuclease
492	 40.52	0	599463..600380	-	305	13508231	yjfW	MPN492	-	L-xylulose 5-phosphate 3-epimerase
493	 44.75	0	600316..600972	-	218	13508232	ulaD	MPN493	-	3-keto-L-gulonate-6-phosphate decarboxylase
494	 45.42	+1	600974..601453	-	159	13508233	yjfU	MPN494	-	phosphotransferase protein II, component A, for pentitol, SGAT-like protein
495	 42.01	0	601455..601742	-	95	13508234	-	MPN495	-	PTS system: EIIB
496	 41.50	0	601745..603727	-	660	13508235	ulaA	MPN496	-	ascorbate-specific PTS system enzyme IIC
497	 46.99	+1	604155..604586	-	143	13508236	-	MPN497	-	phosphotriesterase
498	 41.70	0	604897..605625	+	242	13508237	araD	MPN498	-	L-ribulose-5-phosphate 4-epimerase
499	 40.85	0	605579..606070	+	163	13508238	-	MPN499	-	hypothetical protein
500	 55.11	+2	606218..607801	+	527	13508239	-	MPN500	-	hypothetical protein
501	 35.87	0	608167..608757	+	196	13508240	-	MPN501	-	hypothetical protein
502	 55.48	+2	609202..610470	+	422	13508241	-	MPN502	-	hypothetical protein
503	 52.79	+2	611025..612170	+	381	13508242	-	MPN503	-	cytadherence family protein
504	 34.12	-1	612740..613120	+	126	13508243	-	MPN504	-	hypothetical protein
505	 30.31	-2	613188..613949	-	253	13508244	-	MPN505	-	hypothetical protein
506	 35.31	-1	614865..617246	+	793	13508245	-	MPN506	-	hypothetical protein
507	 32.88	-1	617366..618457	+	363	13508246	-	MPN507	-	type I restriction enzyme ecokI specificity protein (hsdS)-like protein
508	 34.44	-1	618485..620014	-	509	13508247	-	MPN508	-	membrane export protein family protein
509	 35.90	0	620561..621844	-	427	13508248	-	MPN509	-	membrane export protein family protein
510	 39.29	0	622874..624250	-	458	13508249	-	MPN510	-	membrane export protein family protein
511	 36.91	0	624862..625644	-	260	13508250	-	MPN511	-	membrane export protein family protein
512	 38.71	0	625675..626139	-	154	13508251	-	MPN512	-	membrane export protein family protein
513	 39.51	0	626917..627369	-	150	13508252	-	MPN513	-	hypothetical protein
514	 40.22	0	627886..628248	-	120	13508253	-	MPN514	-	hypothetical protein
515	 46.35	+1	628410..632282	-	1290	13508254	rpoC	MPN515	-	DNA-directed RNA polymerase subunit beta'
516	 43.80	0	632286..636461	-	1391	13508255	rpoB	MPN516	-	DNA-directed RNA polymerase subunit beta
517	 37.52	0	636554..637054	-	166	13508256	-	MPN517	-	suggest reductase homologue
518	 33.72	-1	638147..639193	-	348	13508257	-	MPN518	-	hypothetical protein
519	 36.26	0	639196..640014	-	272	13508258	lip3	MPN519	-	triacylglycerol lipase (lip) 3
520	 38.55	0	640132..642717	-	861	13508259	ileS	MPN520	-	isoleucyl-tRNA synthetase
521	 38.32	0	642760..643260	+	166	13508260	ygl3	MPN521	-	putative rRNA methylase
522	 37.91	0	643251..643883	+	210	13508261	-	MPN522	-	methyltransferase
523	 37.36	0	644038..644955	-	305	13508262	-	MPN523	-	membrane component, STARP antigen
524	 35.11	-1	645545..646051	-	168	13508263	-	MPN524	-	hypothetical protein
525	 35.35	-1	646644..647885	+	413	13508264	-	MPN525	-	hypothetical protein
526	 30.50	-2	647866..648852	+	328	13508265	-	MPN526	-	hypothetical protein
527	 35.84	0	649107..649784	-	225	13508266	-	MPN527	-	putative membrane integrated oxidoreductase
528	 37.12	0	649839..650393	+	184	13508267	ppa	MPN528	-	inorganic pyrophosphatase
529	 34.68	-1	650402..650920	+	172	13508428	-	MPN528a	-	penicillin-binding protein-related factor A, putative recombinase
530	 37.27	0	650917..651246	-	109	13508268	-	MPN529	-	histone like protein
531	 34.55	-1	651395..651805	+	136	13508269	-	MPN530	-	hypothetical protein
532	 38.04	0	651802..653949	-	715	13508270	clpB	MPN531	-	ATP-dependent protease binding subunit ClpB
533	 38.16	0	654125..654973	-	282	13508271	licA	MPN532	-	choline kinase
534	 40.58	0	654981..656153	-	390	13508272	ackA	MPN533	-	acetate kinase
535	 33.57	-1	656494..656916	+	140	13508273	-	MPN534	-	hypothetical protein
536	 37.84	0	656922..657542	+	206	13508274	ruvA	MPN535	-	Holliday junction DNA helicase motor protein
537	 41.88	0	657517..658440	+	307	13508275	ruvB	MPN536	-	Holliday junction DNA helicase B
538	 41.16	0	658426..659664	-	412	13508276	mucB	MPN537	-	UV protection protein MucB
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.