IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
382	 38.14	0	458998..459600	+	200	13508121	-	MPN382	-	hypothetical protein
383	 38.52	0	459530..460378	-	282	13508122	yidA	MPN383	-	HAD family phosphatase/phosphatase
384	 42.07	0	460381..462762	-	793	13508123	leuS	MPN384	-	leucyl-tRNA synthetase
385	 36.52	0	462763..463107	-	114	13508124	-	MPN385	-	hypothetical protein
386	 36.52	0	463142..463831	-	229	13508125	yaaF	MPN386	-	deoxyguanosine kinase/ deoxyadenosine kinase
387	 42.90	0	463979..465055	-	358	13508126	-	MPN387	-	hypothetical protein
388	 36.43	0	465048..465176	-	42	13508127	-	MPN388	-	hypothetical protein
389	 41.37	0	465427..466446	-	339	13508128	lplA	MPN389	-	lipoate protein ligase
390	 44.61	0	466473..467846	-	457	13508129	pdhD	MPN390	-	dihydrolipoamide dehydrogenase
391	 47.06	+1	467847..469055	-	402	13508130	pdhC	MPN391	-	branched-chain alpha-keto acid dehydrogenase subunit E2
392	 46.85	+1	469374..470357	-	327	13508131	pdhB	MPN392	-	pyruvate dehydrogenase E1-beta subunit
393	 42.53	0	470379..471455	-	358	13508132	pdhA	MPN393	-	pyruvate dehydrogenase
394	 42.29	0	471476..472915	-	479	13508133	nox	MPN394	-	NADH oxidase
395	 42.32	0	472983..473516	-	177	13508134	apt	MPN395	-	adenine phosphoribosyltransferase
396	 41.12	0	473551..476466	-	971	13508135	F11_orf887	MPN396	-	protein export, secD like
397	 36.60	0	476470..478671	+	733	13508136	spoT	MPN397	-	p)ppGpp 3'-pyrophosphohydrolase
398	 32.42	-1	478668..479324	-	218	13508137	-	MPN398	-	hypothetical protein
399	 35.07	-1	479324..480187	-	287	13508138	-	MPN399	-	hypothetical protein
400	 39.45	0	480249..481997	-	582	13508139	-	MPN400	-	hypothetical protein
401	 41.82	0	482765..483247	-	160	13508140	greA	MPN401	-	transcription elongation factor GreA
402	 42.29	0	483529..484980	+	483	13508141	proS	MPN402	-	prolyl-tRNA synthetase
403	 37.67	0	485125..485493	+	122	13508142	-	MPN403	-	hypothetical protein
404	 40.35	0	485474..486514	+	346	13508143	-	MPN404	-	hypothetical protein
405	 41.58	0	486521..487114	+	197	13508144	-	MPN405	-	hypothetical protein
406	 35.29	-1	487149..487403	+	84	13508145	-	MPN406	-	acyl carrier protein
407	 38.37	0	487508..490147	-	879	13508146	-	MPN407	-	lipase
408	 38.94	0	490375..492657	+	760	13508147	-	MPN408	-	hypothetical protein
409	 55.49	+2	492730..494331	+	533	13508148	-	MPN409	-	hypothetical protein
410	 37.36	0	494694..495140	+	148	13508149	-	MPN410	-	hypothetical protein
411	 29.78	-2	495282..496040	-	252	13508150	-	MPN411	-	hypothetical protein
412	 53.64	+2	496634..497470	+	278	13508151	-	MPN412	-	hypothetical protein
413	 52.38	+2	497547..497966	+	139	13508152	-	MPN413	-	hypothetical protein
414	 51.62	+2	498076..499557	+	493	13508153	-	MPN414	-	hypothetical protein
415	 33.16	-1	499808..500950	+	380	13508154	P37	MPN415	-	high affinity transport system protein P37
416	 34.29	-1	500943..501677	+	244	13508155	P29	MPN416	-	ATP-binding protein P29
417	 36.53	0	501670..503298	+	542	13508156	P69	MPN417	-	transport system permease protein P69
418	 39.01	0	503299..503721	-	140	13508157	-	MPN419	-	hypothetical protein
419	 42.10	0	503721..506423	-	900	13508158	alaS	MPN418	-	alanyl-tRNA synthetase
420	 41.18	0	506475..507200	-	241	13508159	glpQ	MPN420	-	glycerophosphoryl diester phosphodiesterase
421	 41.11	0	507193..508620	-	475	13508160	-	MPN421	-	permease
422	 45.19	+1	508751..509863	-	370	13508161	-	MPN422	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
423	 38.72	0	509864..510253	-	129	13508162	-	MPN423	-	hypothetical protein
424	 36.57	0	510253..510561	-	102	13508163	ylxM	MPN424	-	hypothetical protein
425	 41.74	0	510542..511588	-	348	13508164	ftsY	MPN425	-	cell division protein FtsY
426	 43.78	0	511594..514542	-	982	13508165	-	MPN426	-	SMC family chromosome/DNA binding/protecting protein
427	 42.04	0	514727..515599	+	290	13508166	yidA	MPN427	-	hydrolase/phosphatase
428	 44.65	0	515605..516567	-	320	13508167	eutD	MPN428	-	phosphotransacetylase
429	 45.04	0	516605..517834	-	409	13508168	pgk	MPN429	-	phosphoglycerate kinase
430	 44.48	0	517837..518850	-	337	13508169	gap	MPN430	-	glyceraldehyde-3-phosphate dehydrogenase
431	 40.78	0	518881..519834	-	317	13508170	-	MPN431	-	permease
432	 40.82	0	519824..520972	-	382	13508171	artP	MPN432	-	cobalt ABC transporter ATP-binding protein
433	 42.80	0	520867..521679	-	270	13508172	cbiO	MPN433	-	cobalt ABC transporter ATP-binding protein
434	 44.85	0	521837..523624	-	595	13508173	dnaK	MPN434	-	molecular chaperone DnaK
435	 37.96	0	523680..524867	-	395	13508174	-	MPN435	-	permease
436	 38.15	0	524877..528611	-	1244	13508175	-	MPN436	-	hypothetical protein
437	 34.32	-1	528920..530638	-	572	13508176	-	MPN437	-	hypothetical protein
438	 36.22	0	530856..531893	-	345	13508177	-	MPN438	-	hypothetical protein
439	 35.29	-1	531949..532662	-	237	13508178	-	MPN439	-	hypothetical protein
440	 37.05	0	532818..534998	-	726	13508179	-	MPN440	-	hypothetical protein
441	 43.37	0	535468..535776	+	102	13508180	-	MPN441	-	hypothetical protein
442	 42.16	0	536089..536541	-	150	13508181	-	MPN442	-	species specific lipoprotein
443	 41.95	0	536526..537755	-	409	13508182	deaD	MPN443	-	RNA helicase, eIF4-A translation initiation factor
444	 40.50	0	537762..541739	-	1325	13508183	-	MPN444	-	hypothetical protein
445	 41.84	0	541734..542603	+	289	13508184	lip3	MPN445	-	triacylglycerol lipase (lip) 3
446	 45.47	+1	542664..543281	-	205	13508185	rpsD	MPN446	-	30S ribosomal protein S4
447	 42.56	0	543304..546360	-	1018	13508186	hmw1	MPN447	-	cytadherence accessory protein HMW1
448	 39.86	0	546424..547281	-	285	13508187	-	MPN448	-	hypothetical protein
449	 40.31	0	547332..548678	-	448	13508188	orf8	MPN449	-	hypothetical protein
450	 41.38	0	548690..549634	-	314	13508189	orf7	MPN450	-	hypothetical protein
451	 39.82	0	549513..550622	-	369	13508190	come3	MPN451	-	competence protein
452	 47.35	+1	550662..552680	-	672	13508191	hmw3	MPN452	-	cytadherence accessory protein HMW3
453	 52.00	+2	552694..553518	-	274	13508192	-	MPN453	-	30K adhesin-related protein
454	 44.16	0	553539..554120	-	193	13508193	-	MPN454	-	hypothetical protein
455	 41.55	0	554209..555072	-	287	13508194	ctaD	MPN455	-	hypothetical protein
456	 43.11	0	555398..558415	-	1005	13508195	-	MPN456	-	hypothetical protein
457	 43.23	0	558798..559787	-	329	13508196	-	MPN457	-	hypothetical protein
458	 41.98	0	559729..560202	-	157	13508197	-	MPN458	-	hypothetical protein
459	 42.29	0	560123..561898	-	591	13508198	-	MPN459	-	hypothetical protein
460	 44.35	0	562658..564355	-	565	13508199	ktrB	MPN460	-	Trk-type K+ transport systems, membrane components
461	 42.53	0	564390..565085	+	231	13508200	ktrA	MPN461	-	KtrA, K+ Na+ uptake
462	 54.37	+2	565237..566049	+	270	13508201	-	MPN462	-	hypothetical protein
463	 53.38	+2	566124..566597	+	157	13508202	-	MPN463	-	hypothetical protein
464	 50.37	+2	566891..568228	+	445	13508203	-	MPN464	-	involved in cytadherence
465	 36.17	0	568645..569244	-	199	13508204	-	MPN465	-	hypothetical protein
466	 30.26	-2	569288..569710	-	140	13508205	-	MPN466	-	hypothetical protein
467	 31.37	-1	569740..570045	-	101	13508206	-	MPN467	-	hypothetical protein
468	 55.18	+2	570782..571408	+	208	13508207	-	MPN468	-	hypothetical protein
469	 39.62	0	572254..572985	-	243	13508208	-	MPN469	-	hypothetical protein
470	 43.29	0	573026..574090	-	354	13508209	pepX	MPN470	-	X-Pro dipeptidase
471	 37.65	0	574090..574251	-	53	13508210	rpmG	MPN471	-	50S ribosomal protein L33
472	 39.12	0	574270..575151	-	293	13508211	degV	MPN472	-	hypothetical protein
473	 40.52	0	575157..575963	-	268	13508212	lip2	MPN473	-	triacylglycerol lipase (lip) 2
474	 41.26	0	575950..579051	-	1033	13508213	-	MPN474	-	coiled coil protein, putative structural protein involved in cytosceleton
475	 42.81	0	579408..580757	-	449	13508214	engA	MPN475	-	GTP-binding protein EngA
476	 44.80	0	580759..581412	-	217	13508215	cmk	MPN476	-	cytidylate kinase
477	 40.79	0	581439..582068	-	209	13508216	-	MPN477	-	hypothetical protein
478	 41.38	0	582071..582778	-	235	13508217	-	MPN478	-	hypothetical protein
479	 42.09	0	582782..583375	-	197	13508218	-	MPN479	-	acyl carrier protein phosphodiesterase
480	 42.87	0	583403..585919	-	838	13508219	valS	MPN480	-	valyl-tRNA synthetase
481	 39.52	0	585903..586484	-	193	13508220	yihA	MPN481	-	GTPase EngB
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.