IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
321	 42.24	0	381529..382011	+	160	13508060	dhfr	MPN321	-	dihydrofolate reductase
322	 40.88	0	382018..383037	+	339	13508061	nrdF	MPN322	-	ribonucleotide-diphosphate reductase subunit beta
323	 40.26	0	383040..383501	+	153	13508062	nrdI	MPN323	-	ribonucleotide reductase stimulatory protein
324	 42.29	0	383525..385690	+	721	13508063	nrdE	MPN324	-	ribonucleotide-diphosphate reductase subunit alpha
325	 38.61	0	385837..386139	+	100	13508064	rplU	MPN325	-	50S ribosomal protein L21
326	 44.55	0	386132..386434	+	100	13508065	ysxB	MPN326	-	hypothetical protein
327	 42.54	0	386427..386741	+	104	13508066	rpmA	MPN327	-	50S ribosomal protein L27
328	 42.16	0	386734..387594	+	286	13508067	nfo	MPN328	-	endonuclease IV
329	 38.16	0	387548..388024	+	158	13508068	-	MPN329	-	ferric uptake regulator
330	 41.81	0	388014..388898	+	294	13508069	-	MPN330	-	hypothetical protein
331	 39.25	0	388923..390257	+	444	13508070	tig	MPN331	-	trigger factor
332	 41.58	0	390328..392715	+	795	13508071	lon	MPN332	-	ATP-dependent protease Lon
333	 38.93	0	392910..395162	+	750	13508072	F10_orf750	MPN333	-	hypothetical protein
334	 36.80	0	395165..396145	+	326	13508073	bcrA	MPN334	-	ABC transporter ATP-binding protein
335	 37.83	0	396132..398357	+	741	13508074	-	MPN335	-	hypothetical protein
336	 38.67	0	398358..399407	-	349	161723288	nadD	MPN336	-	putative nicotinate-nucleotide adenylyltransferase
337	 35.10	-1	399477..401342	+	621	13508076	-	MPN337	-	hypothetical protein
338	 36.86	0	401345..403243	+	632	13508077	-	MPN338	-	hypothetical protein
339	 36.89	0	403243..403917	+	224	13508078	-	MPN339	-	hypothetical protein
340	 37.42	0	403921..405510	+	529	13508079	pcrA	MPN340	-	DNA helicase II
341	 35.43	0	405573..407720	+	715	13508080	mutB1	MPN341	-	DNA helicase II
342	 32.84	-1	407861..409492	+	543	13508081	hsdM	MPN342	-	type I restriction enzyme HsdM
343	 38.37	0	409871..410863	+	330	13508082	-	MPN343	-	hypothetical protein
344	 38.25	0	411086..411736	+	216	13508083	-	MPN344	-	hypothetical protein
345	 32.69	-1	412681..413301	+	206	13508084	hsdR	MPN345	-	Type I restriction enzyme (fragment)
346	 29.60	-2	413431..413778	+	115	13508085	-	MPN346	-	Type I restriction enzyme hsdR (fragment)
347	 30.33	-2	413985..415115	+	376	13508086	hsdR	MPN347	-	Type I restriction enzyme (fragment)
348	 31.72	-1	416070..416564	+	164	13508087	-	MPN348	-	5-formyl tetrahydrofolate cyclo-ligase
349	 37.71	0	416554..417399	+	281	13508088	-	MPN349	-	hypothetical protein
350	 35.83	0	417391..418110	-	239	13508089	ygiH	MPN350	-	putative glycerol-3-phosphate acyltransferase PlsY
351	 35.98	0	418116..418757	-	213	13508090	-	MPN351	-	methyltransferase
352	 40.27	0	418741..420240	-	499	13508091	sigA	MPN352	-	RNA polymerase sigma factor
353	 39.83	0	420293..422155	-	620	13508092	dnaE	MPN353	-	DNA primase
354	 42.74	0	422139..423488	-	449	13508093	grs1	MPN354	-	glycyl-tRNA synthetase
355	 41.43	0	423510..424238	-	242	13508094	yacO	MPN355	-	tRNA/rRNA methyltransferase
356	 41.10	0	424241..425554	-	437	13508095	cysS	MPN356	-	cysteinyl-tRNA synthetase
357	 42.74	0	425535..427511	-	658	13508096	lig	MPN357	-	DNA ligase
358	 38.13	0	427679..429283	+	534	13508097	-	MPN358	-	hypothetical protein
359	 38.35	0	429513..430289	+	258	13508098	-	MPN359	-	hypothetical protein
360	 36.39	0	430334..430627	+	97	13508099	rpmE	MPN360	-	50S ribosomal protein L31
361	 42.59	0	430628..431707	+	359	13508100	prfA	MPN361	-	peptide chain release factor 1
362	 39.43	0	431707..433068	+	453	13508101	-	MPN362	-	HemK family methylase
363	 39.48	0	433200..433508	+	102	13508102	-	MPN363	-	hypothetical protein
364	 35.69	0	433547..435580	+	677	13508103	-	MPN364	-	hypothetical protein
365	 33.83	-1	435924..436730	+	268	13508104	-	MPN365	-	hypothetical protein
366	 53.36	+2	436814..437632	+	272	13508105	-	MPN366	-	involved in cytadherence
367	 55.01	+2	437563..438531	+	322	13508106	-	MPN367	-	involved in cytadherence
368	 37.20	0	439220..439762	+	180	13508107	-	MPN368	-	hypothetical protein
369	 31.36	-1	439894..440655	-	253	13508108	-	MPN369	-	hypothetical protein
370	 55.42	+2	441296..443509	+	737	13508109	-	MPN370	-	hypothetical protein
371	 55.97	+2	443552..444187	-	211	13508110	-	MPN371	-	hypothetical protein
372	 41.55	0	444341..446116	+	591	13508111	-	MPN372	-	toxin subunit s1
373	 39.84	0	446127..446741	-	204	13508112	-	MPN373	-	hypothetical protein
374	 33.33	-1	447770..448459	-	229	13508113	-	MPN374	-	hypothetical protein
375	 41.03	0	448805..449194	-	129	13508114	-	MPN375	-	hypothetical protein
376	 38.59	0	449573..452995	-	1140	13508115	-	MPN376	-	hypothetical protein
377	 36.00	0	453422..453646	+	74	13508116	-	MPN377	-	hypothetical protein
378	 39.82	0	453650..456268	+	872	13508117	dnaE	MPN378	-	DNA polymerase III alpha subunit
379	 37.21	0	456272..457147	+	291	13508118	polA	MPN379	-	5'-3' exonuclease (complete)
380	 35.97	0	457147..457980	+	277	13508119	fpg	MPN380	-	formamidopyrimidine-DNA glycosylase
381	 39.59	0	458126..459004	+	292	13508120	yidA	MPN381	-	HAD family phosphatase/phosphatase
382	 38.14	0	458998..459600	+	200	13508121	-	MPN382	-	hypothetical protein
383	 38.52	0	459530..460378	-	282	13508122	yidA	MPN383	-	HAD family phosphatase/phosphatase
384	 42.07	0	460381..462762	-	793	13508123	leuS	MPN384	-	leucyl-tRNA synthetase
385	 36.52	0	462763..463107	-	114	13508124	-	MPN385	-	hypothetical protein
386	 36.52	0	463142..463831	-	229	13508125	yaaF	MPN386	-	deoxyguanosine kinase/ deoxyadenosine kinase
387	 42.90	0	463979..465055	-	358	13508126	-	MPN387	-	hypothetical protein
388	 36.43	0	465048..465176	-	42	13508127	-	MPN388	-	hypothetical protein
389	 41.37	0	465427..466446	-	339	13508128	lplA	MPN389	-	lipoate protein ligase
390	 44.61	0	466473..467846	-	457	13508129	pdhD	MPN390	-	dihydrolipoamide dehydrogenase
391	 47.06	+1	467847..469055	-	402	13508130	pdhC	MPN391	-	branched-chain alpha-keto acid dehydrogenase subunit E2
392	 46.85	+1	469374..470357	-	327	13508131	pdhB	MPN392	-	pyruvate dehydrogenase E1-beta subunit
393	 42.53	0	470379..471455	-	358	13508132	pdhA	MPN393	-	pyruvate dehydrogenase
394	 42.29	0	471476..472915	-	479	13508133	nox	MPN394	-	NADH oxidase
395	 42.32	0	472983..473516	-	177	13508134	apt	MPN395	-	adenine phosphoribosyltransferase
396	 41.12	0	473551..476466	-	971	13508135	F11_orf887	MPN396	-	protein export, secD like
397	 36.60	0	476470..478671	+	733	13508136	spoT	MPN397	-	p)ppGpp 3'-pyrophosphohydrolase
398	 32.42	-1	478668..479324	-	218	13508137	-	MPN398	-	hypothetical protein
399	 35.07	-1	479324..480187	-	287	13508138	-	MPN399	-	hypothetical protein
400	 39.45	0	480249..481997	-	582	13508139	-	MPN400	-	hypothetical protein
401	 41.82	0	482765..483247	-	160	13508140	greA	MPN401	-	transcription elongation factor GreA
402	 42.29	0	483529..484980	+	483	13508141	proS	MPN402	-	prolyl-tRNA synthetase
403	 37.67	0	485125..485493	+	122	13508142	-	MPN403	-	hypothetical protein
404	 40.35	0	485474..486514	+	346	13508143	-	MPN404	-	hypothetical protein
405	 41.58	0	486521..487114	+	197	13508144	-	MPN405	-	hypothetical protein
406	 35.29	-1	487149..487403	+	84	13508145	-	MPN406	-	acyl carrier protein
407	 38.37	0	487508..490147	-	879	13508146	-	MPN407	-	lipase
408	 38.94	0	490375..492657	+	760	13508147	-	MPN408	-	hypothetical protein
409	 55.49	+2	492730..494331	+	533	13508148	-	MPN409	-	hypothetical protein
410	 37.36	0	494694..495140	+	148	13508149	-	MPN410	-	hypothetical protein
411	 29.78	-2	495282..496040	-	252	13508150	-	MPN411	-	hypothetical protein
412	 53.64	+2	496634..497470	+	278	13508151	-	MPN412	-	hypothetical protein
413	 52.38	+2	497547..497966	+	139	13508152	-	MPN413	-	hypothetical protein
414	 51.62	+2	498076..499557	+	493	13508153	-	MPN414	-	hypothetical protein
415	 33.16	-1	499808..500950	+	380	13508154	P37	MPN415	-	high affinity transport system protein P37
416	 34.29	-1	500943..501677	+	244	13508155	P29	MPN416	-	ATP-binding protein P29
417	 36.53	0	501670..503298	+	542	13508156	P69	MPN417	-	transport system permease protein P69
418	 39.01	0	503299..503721	-	140	13508157	-	MPN419	-	hypothetical protein
419	 42.10	0	503721..506423	-	900	13508158	alaS	MPN418	-	alanyl-tRNA synthetase
420	 41.18	0	506475..507200	-	241	13508159	glpQ	MPN420	-	glycerophosphoryl diester phosphodiesterase
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.