IslandPathversion 1.0

IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.26 STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
198	 38.85	0	238364..239323	+	319	13507937	mte1	MPN198	-	adenine-specific methyltransferase EcoRI
199	 37.58	0	239417..241699	+	760	13507938	-	MPN199	-	hypothetical protein
200	 36.00	0	241983..244379	+	798	13507939	-	MPN200	-	hypothetical protein
201	 34.45	-1	244853..245569	+	238	13507940	-	MPN201	-	hypothetical protein
202	 54.46	+2	246049..246990	+	313	13507941	-	MPN202	-	hypothetical protein
203	 52.34	+2	246909..247292	+	127	13507942	-	MPN203	-	hypothetical protein
204	 36.91	0	247655..248101	+	148	13507943	-	MPN204	-	hypothetical protein
205	 52.77	+2	248562..249878	+	438	13507944	-	MPN205	-	hypothetical protein
206	 37.13	0	249933..250274	-	113	13507945	-	MPN206	-	hypothetical protein
207	 41.23	0	250326..253148	+	940	13507946	ptsG	MPN207	-	PTS system, glucose-specific IIABC component
208	 40.68	0	253758..254642	+	294	13507947	rpsB	MPN208	-	30S ribosomal protein S2
209	 43.68	0	254635..257253	+	872	13507948	mgtA	MPN209	-	cation-transporting P-type ATPase
210	 46.81	+1	257240..259666	+	808	13507949	secA	MPN210	-	preprotein translocase subunit SecA
211	 44.53	0	259641..261614	+	657	13507950	uvrB	MPN211	-	excinuclease ABC subunit B
212	 39.22	0	261617..262024	+	135	13507951	-	MPN212	-	hypothetical protein
213	 36.89	0	262129..265221	+	1030	13507952	-	MPN213	-	hypothetical protein
214	 37.41	0	265218..265634	-	138	13507953	-	MPN214	-	hypothetical protein
215	 40.17	0	265910..267079	+	389	13507954	oppB	MPN215	-	oligopeptide transport system permease protein OppB
216	 43.68	0	267072..268202	+	376	13507955	amiD	MPN216	-	oligopeptide transport system permease protein AmiD
217	 44.65	0	268204..269475	+	423	13507956	oppD	MPN217	-	oligopeptide transport ATP-binding protein OppD
218	 41.90	0	269438..271993	+	851	13507957	oppF	MPN218	-	but only N- and C-term; inbetween (500AA) seg and coil
219	 44.20	0	272049..272462	+	137	13507958	rplK	MPN219	-	50S ribosomal protein L11
220	 44.20	0	272462..273142	+	226	13507959	rplA	MPN220	-	50S ribosomal protein L1
221	 39.51	0	273142..273708	+	188	13507960	pth	MPN221	-	peptidyl-tRNA hydrolase
222	 42.07	0	273701..274570	+	289	13507961	yacA	MPN222	-	PP-loop superfamily protein ATPase
223	 41.11	0	274571..275509	+	312	13507962	-	MPN223	-	HPr kinase/phosphorylase
224	 40.68	0	275499..276668	+	389	13507963	lgt	MPN224	-	prolipoprotein diacylglyceryl transferase
225	 44.52	0	276697..277116	+	139	13507964	rpsL	MPN225	-	30S ribosomal protein S12
226	 45.73	+1	277170..277637	+	155	13507965	rpsG	MPN226	-	30S ribosomal protein S7
227	 45.86	+1	277660..279726	+	688	13507966	fus	MPN227	-	elongation factor G
228	 42.90	0	279783..280430	+	215	13507967	rpsF	MPN228	-	30S ribosomal protein S6
229	 41.32	0	280430..280930	+	166	13507968	ssb	MPN229	-	single-stranded DNA binding protein
230	 39.37	0	280920..281234	+	104	13507969	rpsR	MPN230	-	30S ribosomal protein S18
231	 38.89	0	281237..281686	+	149	13507970	rplI	MPN231	-	50S ribosomal protein L9
232	 39.52	0	281673..283094	+	473	13507971	dnaB	MPN232	-	replicative DNA helicase DnaB
233	 37.00	0	283098..284462	+	454	13507972	-	MPN233	-	excreted protein
234	 36.84	0	285190..286443	+	417	13507973	-	MPN234	-	membrane export protein family protein
235	 41.08	0	286468..287190	+	240	13507974	ung	MPN235	-	uracil-DNA glycosylase
236	 39.51	0	287388..288827	+	479	13507975	-	MPN236	-	aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein
237	 41.89	0	288830..290266	+	478	13507976	gatA	MPN237	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
238	 41.27	0	290256..291692	+	478	13507977	gatB	MPN238	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
239	 39.16	0	291667..292335	+	222	13507978	-	MPN239	-	hypothetical protein
240	 42.72	0	292328..293275	+	315	13507979	trxB	MPN240	-	thioredoxin reductase
241	 38.79	0	293265..294107	+	280	13507980	-	MPN241	-	hypothetical protein
242	 35.06	-1	294140..294370	+	76	13507981	secG	MPN242	-	preprotein translocase subunit SecG
243	 42.64	0	294381..296561	+	726	13507982	vacB	MPN243	-	3'-5' exoribonuclease, RNase R
244	 42.53	0	296561..297169	+	202	13507983	-	MPN244	-	hypothetical protein
245	 39.63	0	297138..297788	-	216	13507984	def	MPN245	-	peptide deformylase
246	 38.06	0	297610..298329	+	239	13507985	gmk	MPN246	-	membrane-associated guanylate kinase homologue
247	 41.15	0	298329..299108	+	259	13507986	ptc1	MPN247	-	protein phoshatase
248	 40.68	0	299099..300268	+	389	13507987	-	MPN248	-	Ser/Thr/Tyr protein kinase
249	 39.55	0	300255..301091	+	278	13507988	yjeQ	MPN249	-	GTP/ATP binding protein
250	 39.60	0	301113..302405	+	430	13507989	pgi	MPN250	-	glucose-6-phosphate isomerase
251	 40.90	0	302383..303030	+	215	13507990	cfxE	MPN251	-	ribulose-phosphate 3-epimerase
252	 40.86	0	303037..304404	+	455	13507991	asnC	MPN252	-	asparaginyl-tRNA synthetase
253	 37.87	0	304361..305044	+	227	13507992	pgsA	MPN253	-	phosphatidylglycerophosphate synthase
254	 41.77	0	305066..305539	+	157	13507993	-	MPN254	-	hypothetical protein
255	 40.08	0	305565..306320	+	251	13507994	-	MPN255	-	hypothetical protein
256	 37.95	0	306313..306984	+	223	13507995	-	MPN256	-	hypothetical protein
257	 41.30	0	306965..307981	+	338	13507996	galE	MPN257	-	UDP-glucose 4-epimerase
258	 40.37	0	307996..309714	+	572	13507997	yjcW	MPN258	-	sugar (ribose/galactose) ABC transporter ATP-binding subunit
259	 40.60	0	309731..311284	+	517	13507998	-	MPN259	-	sugar ABC transporter permease subunit
260	 41.24	0	311284..312219	+	311	13507999	rbsC	MPN260	-	sugar (ribose/galactose) ABC transporter permease subunit
261	 40.12	0	312256..314391	+	711	13508000	topA	MPN261	-	DNA topoisomerase I
262	 37.11	0	314381..315808	+	475	13508001	A65_orf475	MPN262	-	reticulocyte binding protein
263	 39.48	0	315874..316182	+	102	13508002	trx	MPN263	-	thioredoxin
264	 38.18	0	316194..317039	+	281	13508003	-	MPN264	-	hypothetical protein
265	 41.69	0	317047..318087	-	346	13508004	trpS	MPN265	-	tryptophanyl-tRNA synthetase
266	 37.44	0	318144..318581	+	145	13508005	ygl1	MPN266	-	(oxido/arsenate) reductase
267	 40.13	0	318581..319360	+	259	13508006	ppnK	MPN267	-	inorganic polyphosphate/ATP-NAD kinase
268	 38.70	0	319360..319713	+	117	13508007	-	MPN268	-	PTS system component EIIB/EIIC domain-containing protein
269	 35.96	0	319703..321184	+	493	13508008	ysr1	MPN269	-	hypothetical protein
270	 35.42	0	321187..321474	+	95	13508009	-	MPN270	-	hypothetical protein
271	 31.35	-1	321736..322491	+	251	13508010	-	MPN271	-	hypothetical protein
272	 36.88	0	324197..324478	+	93	13508011	-	MPN272	-	hypothetical protein
273	 40.46	0	324455..324889	-	144	13508012	hit1	MPN273	-	nucleotidyl hydrolase/transferase
274	 37.58	0	324858..325658	-	266	13508013	A65_orf266	MPN274	-	ABC transporter (sulfate/molybdenum) permease subunit
275	 40.59	0	325680..325982	+	100	13508014	yaaK	MPN275	-	hypothetical protein
276	 39.98	0	325954..326811	-	285	13508015	-	MPN276	-	hypothetical protein
277	 42.18	0	326856..328325	+	489	13508016	lysS	MPN277	-	lysyl-tRNA synthetase
278	 39.33	0	328285..329484	+	399	13508017	yefE	MPN278	-	udp-galactopyranose mutase
279	 42.67	0	329484..331229	+	581	13508018	lepA	MPN279	-	GTP-binding protein LepA
280	 43.27	0	331360..333069	+	569	13508019	-	MPN280	-	single stranded RNA(DNA) processing enzyme
281	 36.42	0	333280..334413	+	377	13508020	-	MPN281	-	hypothetical protein
282	 32.93	-1	334768..335268	+	166	13508021	-	MPN282	-	hypothetical protein
283	 39.66	0	336479..336826	+	115	13508022	-	MPN283	-	hypothetical protein
284	 35.01	-1	337770..340154	+	794	13508023	-	MPN284	-	hypothetical protein
285	 38.44	0	340613..341533	+	306	13508024	prrB	MPN285	-	type I restriction enzyme ecokI specificity protein
286	 54.94	+2	341636..343033	+	465	13508025	-	MPN286	-	hypothetical protein
287	 33.89	-1	343764..344120	+	118	13508026	-	MPN287	-	hypothetical protein
288	 35.28	-1	344716..347079	+	787	13508027	-	MPN288	-	hypothetical protein
289	 36.17	0	347169..347732	+	187	13508028	hsdS1B	MPN289	-	this protein specifications means only that it IS a type I restriction with enzyme ecokI specificity protein
290	 34.25	-1	347871..348308	+	145	13508029	-	MPN290	-	hypothetical protein
291	 38.58	0	348301..348891	-	196	13508030	-	MPN291	-	hypothetical protein
292	 40.32	0	348875..349804	-	309	13508031	yceC	MPN292	-	ribosomal large subunit pseudouridine synthase D
293	 37.12	0	349804..350358	-	184	13508032	lspA	MPN293	-	signal peptidase II
294	 41.55	0	350397..351017	+	206	13508033	-	MPN294	-	intracellular protease
295	 40.12	0	351066..351728	+	220	13508034	-	MPN295	-	hypothetical protein
296	 40.44	0	351728..351910	+	60	13508035	rpsU	MPN296	-	30S ribosomal protein S21
297	 40.89	0	351935..352384	+	149	13508036	-	MPN297	-	hypothetical protein
40.26	MEAN

4.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.