IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
123	 42.28	0	158374..160743	+	789	13507862	parC	MPN123	-	topoisomerase IV subunit A
124	 39.68	0	160730..161785	-	351	13507863	hrcA	MPN124	-	heat-inducible transcription repressor
125	 41.40	0	161817..163577	+	586	13507864	uvrC	MPN125	-	excinuclease ABC subunit C
126	 39.58	0	163613..164092	+	159	13507865	-	MPN126	-	hypothetical protein
127	 35.36	-1	164484..165026	+	180	13507866	-	MPN127	-	hypothetical protein
128	 55.78	+2	166483..166932	+	149	13507867	-	MPN128	-	hypothetical protein
129	 31.56	-1	167632..168081	+	149	13507868	-	MPN129	-	adhesin P1
130	 38.30	0	169042..169464	+	140	13507869	-	MPN130	-	hypothetical protein
131	 52.85	+2	170068..170733	+	221	13507870	-	MPN131	-	hypothetical protein
132	 53.96	+2	171049..171819	+	256	13507871	-	MPN132	-	hypothetical protein
133	 43.16	0	172277..173182	+	301	13507872	-	MPN133	-	putative lipoprotein
134	 41.28	0	173206..174966	+	586	13507873	ugpC	MPN134	-	sn-glycerol-3-phosphate transport system permease protein
135	 38.99	0	174959..175948	+	329	13507874	ugpA	MPN135	-	sn-glycerol-3-phosphate transport system permease protein
136	 40.94	0	175920..176879	+	319	13507875	ugpE	MPN136	-	sn-glycerol-3-phosphate transport system permease protein
137	 36.97	0	177457..178143	-	228	13507876	-	MPN137	-	hypothetical protein
138	 35.53	0	178392..178892	-	166	13507877	-	MPN138	-	hypothetical protein
139	 37.20	0	179129..179620	-	163	13507878	-	MPN139	-	hypothetical protein
140	 42.87	0	179871..180845	+	324	13507879	orf4	MPN140	-	DHH family phosphoesterase
141	 53.48	+2	180858..185741	+	1627	13507880	P1	MPN141	-	ADP1_MYCPN adhesin P1
142	 50.92	+2	185747..189403	+	1218	13507881	orf6	MPN142	-	involved in cytadherence
143	 43.37	0	189520..190047	+	175	13507882	-	MPN143	-	hypothetical protein
144	 55.64	+2	190621..191862	+	413	13507883	-	MPN144	-	hypothetical protein
145	 36.85	0	192214..192753	+	179	13507884	-	MPN145	-	hypothetical protein
146	 38.47	0	193071..193868	+	265	13507885	-	MPN146	-	hypothetical protein
147	 36.28	0	193875..195332	+	485	13507886	-	MPN147	-	hypothetical protein
148	 31.44	-1	195875..196297	+	140	13507887	-	MPN148	-	hypothetical protein
149	 51.65	+2	196850..198154	+	434	13507888	-	MPN149	-	hypothetical protein
150	 52.59	+2	197982..198656	+	224	13507889	-	MPN150	-	hypothetical protein
151	 38.31	0	199139..199540	+	133	13507890	-	MPN151	-	hypothetical protein
152	 37.86	0	199823..202207	+	794	13507891	-	MPN152	-	hypothetical protein
153	 40.66	0	202383..205724	+	1113	13507892	-	MPN153	-	hypothetical protein
154	 43.01	0	205801..207423	+	540	13507893	nusA	MPN154	-	transcription elongation factor NusA
155	 45.52	+1	207704..209557	+	617	13507894	infB	MPN155	-	translation initiation factor IF-2
156	 41.31	0	209560..209910	+	116	13507895	rbfA	MPN156	-	ribosome binding factor A
157	 43.42	0	209926..211134	+	402	13507896	-	MPN157	-	hypothetical protein
158	 45.06	0	211147..211956	+	269	13507897	yaaC	MPN158	-	riboflavin kinase (flavokinase)/FMN adenylyltransferase (FAD pyrophosphorylase) (FAD synthetase); bifunctional
159	 42.59	0	211982..213256	+	424	13507898	hlyC	MPN159	-	tlyC homolog, hemolysin activity doubtful
160	 41.18	0	213243..214376	+	377	13507899	-	MPN160	-	hypothetical protein
161	 37.22	0	214530..215867	+	445	13507900	-	MPN161	-	hypothetical protein
162	 38.94	0	215989..216951	+	320	13507901	-	MPN162	-	hypothetical protein
163	 34.51	-1	217198..217536	+	112	13507902	-	MPN163	-	hypothetical protein
164	 43.12	0	217630..217956	+	108	13507903	rpsJ	MPN164	-	30S ribosomal protein S10
165	 44.21	0	217970..218833	+	287	13507904	rplC	MPN165	-	50S ribosomal protein L3
166	 42.57	0	218833..219471	+	212	13507905	rplD	MPN166	-	50S ribosomal protein L4
167	 41.04	0	219474..220187	+	237	13507906	rplW	MPN167	-	50S ribosomal protein L23
168	 47.69	+1	220187..221050	+	287	13507907	rplB	MPN168	-	50S ribosomal protein L2
169	 44.32	0	221050..221313	+	87	13507908	rpsS	MPN169	-	30S ribosomal protein S19
170	 44.86	0	221240..221794	+	184	13507909	rplV	MPN170	-	50S ribosomal protein L22
171	 47.08	+1	221796..222617	+	273	13507910	rpsC	MPN171	-	30S ribosomal protein S3
172	 46.67	+1	222617..223036	+	139	13507911	rplP	MPN172	-	50S ribosomal protein L16
173	 42.56	0	223036..223371	+	111	13507912	rpmC	MPN173	-	50S ribosomal protein L29
174	 44.96	0	223371..223628	+	85	13507913	rpsQ	MPN174	-	30S ribosomal protein S17
175	 45.80	+1	223632..224000	+	122	13507914	rplN	MPN175	-	50S ribosomal protein L14
176	 41.07	0	224000..224335	+	111	13507915	rplX	MPN176	-	50S ribosomal protein L24
177	 43.65	0	224338..224880	+	180	13507916	rplE	MPN177	-	50S ribosomal protein L5
178	 46.77	+1	224882..225067	+	61	13507917	rpsN	MPN178	-	30S ribosomal protein S14
179	 43.82	0	225061..225489	+	142	13507918	rpsH	MPN179	-	30S ribosomal protein S8
180	 44.68	0	225496..226050	+	184	13507919	rplF	MPN180	-	50S ribosomal protein L6
181	 45.30	+1	226051..226401	+	116	13507920	rplR	MPN181	-	50S ribosomal protein L18
182	 48.18	+1	226405..227064	+	219	13507921	rpsE	MPN182	-	30S ribosomal protein S5
183	 45.39	+1	227068..227523	+	151	13507922	rplO	MPN183	-	50S ribosomal protein L15
184	 45.96	+1	227523..228956	+	477	13507923	secY	MPN184	-	preprotein translocase subunit SecY
185	 45.68	+1	228950..229597	+	215	13507924	adk	MPN185	-	adenylate kinase
186	 41.77	0	229597..230343	+	248	13507925	map	MPN186	-	methionine amino peptidase
187	 40.51	0	230343..230579	+	78	13507926	infA	MPN187	-	initiation factor 1
188	 37.72	0	230590..230703	+	37	13507927	rpmJ	MPN188	-	50S ribosomal protein L36
189	 46.40	+1	230703..231077	+	124	13507928	rpsM	MPN189	-	30S ribosomal protein S13
190	 48.91	+1	231077..231442	+	121	13507929	rpsK	MPN190	-	30S ribosomal protein S11
191	 43.39	0	231448..232431	+	327	13507930	rpoA	MPN191	-	DNA-directed RNA polymerase subunit alpha
192	 40.27	0	232434..232808	+	124	13507931	rplQ	MPN192	-	50S ribosomal protein L17
193	 42.91	0	232792..233616	+	274	13507932	CbiO	MPN193	-	cobalt transporter ATP-binding subunit
194	 40.13	0	233604..234515	+	303	13507933	hisP	MPN194	-	cobalt transporter ATP-binding subunit
195	 40.77	0	234508..235812	+	434	13507934	-	MPN195	-	cobalt ABC transporter
196	 42.49	0	235805..236536	+	243	13507935	truA	MPN196	-	tRNA pseudouridine synthase A
197	 40.20	0	236529..238364	+	611	13507936	pepF	MPN197	-	oligoendopeptidase F
198	 38.85	0	238364..239323	+	319	13507937	mte1	MPN198	-	adenine-specific methyltransferase EcoRI
199	 37.58	0	239417..241699	+	760	13507938	-	MPN199	-	hypothetical protein
200	 36.00	0	241983..244379	+	798	13507939	-	MPN200	-	hypothetical protein
201	 34.45	-1	244853..245569	+	238	13507940	-	MPN201	-	hypothetical protein
202	 54.46	+2	246049..246990	+	313	13507941	-	MPN202	-	hypothetical protein
203	 52.34	+2	246909..247292	+	127	13507942	-	MPN203	-	hypothetical protein
204	 36.91	0	247655..248101	+	148	13507943	-	MPN204	-	hypothetical protein
205	 52.77	+2	248562..249878	+	438	13507944	-	MPN205	-	hypothetical protein
206	 37.13	0	249933..250274	-	113	13507945	-	MPN206	-	hypothetical protein
207	 41.23	0	250326..253148	+	940	13507946	ptsG	MPN207	-	PTS system, glucose-specific IIABC component
208	 40.68	0	253758..254642	+	294	13507947	rpsB	MPN208	-	30S ribosomal protein S2
209	 43.68	0	254635..257253	+	872	13507948	mgtA	MPN209	-	cation-transporting P-type ATPase
210	 46.81	+1	257240..259666	+	808	13507949	secA	MPN210	-	preprotein translocase subunit SecA
211	 44.53	0	259641..261614	+	657	13507950	uvrB	MPN211	-	excinuclease ABC subunit B
212	 39.22	0	261617..262024	+	135	13507951	-	MPN212	-	hypothetical protein
213	 36.89	0	262129..265221	+	1030	13507952	-	MPN213	-	hypothetical protein
214	 37.41	0	265218..265634	-	138	13507953	-	MPN214	-	hypothetical protein
215	 40.17	0	265910..267079	+	389	13507954	oppB	MPN215	-	oligopeptide transport system permease protein OppB
216	 43.68	0	267072..268202	+	376	13507955	amiD	MPN216	-	oligopeptide transport system permease protein AmiD
217	 44.65	0	268204..269475	+	423	13507956	oppD	MPN217	-	oligopeptide transport ATP-binding protein OppD
218	 41.90	0	269438..271993	+	851	13507957	oppF	MPN218	-	but only N- and C-term; inbetween (500AA) seg and coil
219	 44.20	0	272049..272462	+	137	13507958	rplK	MPN219	-	50S ribosomal protein L11
220	 44.20	0	272462..273142	+	226	13507959	rplA	MPN220	-	50S ribosomal protein L1
221	 39.51	0	273142..273708	+	188	13507960	pth	MPN221	-	peptidyl-tRNA hydrolase
222	 42.07	0	273701..274570	+	289	13507961	yacA	MPN222	-	PP-loop superfamily protein ATPase
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.