IslandPath Analysis: Mycoplasma pneumoniae M129



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.26   STD DEV: 4.85
Mycoplasma pneumoniae M129, complete genome - 1..816394
689 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
72	 40.41	0	86410..86946	-	178	13507811	yabF	MPN072	-	nucelotidyl transferase/polynicleotide cleavage
73	 43.19	0	86925..88091	-	388	13507812	prs	MPN073	-	ribose-phosphate pyrophosphokinase
74	 39.19	0	87898..88341	-	147	13507813	smpB	MPN074	-	SsrA-binding protein
75	 37.00	0	88348..89247	+	299	13507814	ywdF	MPN075	-	glycosyl transferase
76	 42.12	0	89299..90993	-	564	13507815	uhpT	MPN076	-	hypothetical protein
77	 40.16	0	91199..92839	-	546	13507816	-	MPN077	-	hypothetical protein
78	 42.35	0	93191..95275	+	694	13507817	fruA	MPN078	-	fructose-permease IIBC component
79	 40.20	0	95268..96170	+	300	13507818	fruK	MPN079	-	1-phosphofructokinase
80	 40.88	0	96407..100567	+	1386	13507819	-	MPN080	-	ABC transporter membrane protein
81	 42.13	0	100567..101964	+	465	13507820	glnQ	MPN081	-	glutamine transport ATP-binding protein
82	 45.04	0	101985..103931	+	648	13507821	tklB	MPN082	-	transketolase
83	 40.89	0	103941..105542	+	533	13507822	-	MPN083	-	hypothetical protein
84	 38.60	0	105592..107166	+	524	13507823	-	MPN084	-	hypothetical protein
85	 27.74	-2	107273..108595	+	440	13507824	-	MPN085	-	adhesin P1
86	 27.67	-2	108857..109174	+	105	13507825	-	MPN086	-	adhesin P1
87	 28.70	-2	109346..109798	+	150	13507826	-	MPN087	-	adhesin P1
88	 31.05	-1	110813..111118	+	101	13507827	-	MPN088	-	hypothetical protein
89	 35.22	-1	111610..112617	+	335	13507828	hsdS	MPN089	-	hypothetical protein
90	 30.91	-1	112772..113761	+	329	13507829	-	MPN090	-	adhesin P1
91	 52.04	+2	113838..114254	+	138	13507830	-	MPN091	-	hypothetical protein
92	 51.15	+2	114572..115093	+	173	13507831	-	MPN092	-	involved in cytadherence
93	 53.20	+2	114948..115853	+	301	13507832	-	MPN093	-	involved in cytadherence
94	 37.12	0	116287..116709	+	140	13507833	-	MPN094	-	hypothetical protein
95	 42.48	0	123290..124054	+	254	13507834	-	MPN095	-	aa_permeases
96	 41.38	0	124054..124848	+	264	13507835	-	MPN096	-	aa_permeases
97	 38.01	0	125024..126649	+	541	13507836	-	MPN097	-	hypothetical protein
98	 39.64	0	126947..127390	+	147	13507837	-	MPN098	-	hypothetical protein
99	 54.21	+2	128076..129119	+	347	13507838	-	MPN099	-	hypothetical protein
100	 36.41	0	129458..130009	+	183	13507839	-	MPN100	-	hypothetical protein
101	 55.87	+2	130466..131752	+	428	13507840	-	MPN101	-	hypothetical protein
102	 51.89	+2	132568..133386	+	272	13507841	-	MPN102	-	involved in cytadherence
103	 38.15	0	134055..134573	-	172	13507842	-	MPN103	-	hypothetical protein
104	 33.97	-1	134583..134897	+	104	13507843	-	MPN104	-	hypothetical protein
105	 40.16	0	135731..136756	+	341	13507844	pheS	MPN105	-	phenylalanyl-tRNA synthetase subunit alpha
106	 39.95	0	136759..139176	+	805	13507845	pheT	MPN106	-	phenylalanyl-tRNA synthetase subunit beta
107	 33.07	-1	139289..140044	+	251	13507846	-	MPN107	-	hypothetical protein
108	 33.09	-1	140046..141260	+	404	13507847	-	MPN108	-	hypothetical protein
109	 30.92	-1	141940..142437	+	165	13507848	-	MPN109	-	hypothetical protein
110	 30.97	-1	142361..144517	+	718	13507849	-	MPN110	-	hypothetical protein
111	 33.10	-1	145021..146289	+	422	13507850	-	MPN111	-	hypothetical protein
112	 42.75	0	147149..147541	+	130	13507851	-	MPN112	-	permease
113	 39.43	0	148090..148761	+	223	13507852	-	MPN113	-	putative G3P transporters
114	 43.54	0	148751..150553	+	600	13507853	cpt2	MPN114	-	acyltransferase
115	 38.78	0	150643..151248	+	201	13507854	infC	MPN115	-	translation initiation factor IF-3
116	 42.22	0	151254..151433	+	59	13507855	rpmI	MPN116	-	50S ribosomal protein L35
117	 44.53	0	151444..151827	+	127	13507856	rplT	MPN117	-	50S ribosomal protein L20
118	 41.07	0	151802..152512	-	236	13507857	-	MPN118	-	similarity with ribonuclease HII
119	 42.99	0	152568..155300	+	910	13507858	-	MPN119	-	hypothetical protein
120	 39.45	0	155323..155976	+	217	13507859	grpE	MPN120	-	heat shock protein GrpE
121	 37.16	0	155976..156341	+	121	13507860	-	MPN121	-	hypothetical protein
122	 42.82	0	156467..158374	+	635	13507861	parB	MPN122	-	topoisomerase IV subunit B
123	 42.28	0	158374..160743	+	789	13507862	parC	MPN123	-	topoisomerase IV subunit A
124	 39.68	0	160730..161785	-	351	13507863	hrcA	MPN124	-	heat-inducible transcription repressor
125	 41.40	0	161817..163577	+	586	13507864	uvrC	MPN125	-	excinuclease ABC subunit C
126	 39.58	0	163613..164092	+	159	13507865	-	MPN126	-	hypothetical protein
127	 35.36	-1	164484..165026	+	180	13507866	-	MPN127	-	hypothetical protein
128	 55.78	+2	166483..166932	+	149	13507867	-	MPN128	-	hypothetical protein
129	 31.56	-1	167632..168081	+	149	13507868	-	MPN129	-	adhesin P1
130	 38.30	0	169042..169464	+	140	13507869	-	MPN130	-	hypothetical protein
131	 52.85	+2	170068..170733	+	221	13507870	-	MPN131	-	hypothetical protein
132	 53.96	+2	171049..171819	+	256	13507871	-	MPN132	-	hypothetical protein
133	 43.16	0	172277..173182	+	301	13507872	-	MPN133	-	putative lipoprotein
134	 41.28	0	173206..174966	+	586	13507873	ugpC	MPN134	-	sn-glycerol-3-phosphate transport system permease protein
135	 38.99	0	174959..175948	+	329	13507874	ugpA	MPN135	-	sn-glycerol-3-phosphate transport system permease protein
136	 40.94	0	175920..176879	+	319	13507875	ugpE	MPN136	-	sn-glycerol-3-phosphate transport system permease protein
137	 36.97	0	177457..178143	-	228	13507876	-	MPN137	-	hypothetical protein
138	 35.53	0	178392..178892	-	166	13507877	-	MPN138	-	hypothetical protein
139	 37.20	0	179129..179620	-	163	13507878	-	MPN139	-	hypothetical protein
140	 42.87	0	179871..180845	+	324	13507879	orf4	MPN140	-	DHH family phosphoesterase
141	 53.48	+2	180858..185741	+	1627	13507880	P1	MPN141	-	ADP1_MYCPN adhesin P1
142	 50.92	+2	185747..189403	+	1218	13507881	orf6	MPN142	-	involved in cytadherence
143	 43.37	0	189520..190047	+	175	13507882	-	MPN143	-	hypothetical protein
144	 55.64	+2	190621..191862	+	413	13507883	-	MPN144	-	hypothetical protein
145	 36.85	0	192214..192753	+	179	13507884	-	MPN145	-	hypothetical protein
146	 38.47	0	193071..193868	+	265	13507885	-	MPN146	-	hypothetical protein
147	 36.28	0	193875..195332	+	485	13507886	-	MPN147	-	hypothetical protein
148	 31.44	-1	195875..196297	+	140	13507887	-	MPN148	-	hypothetical protein
149	 51.65	+2	196850..198154	+	434	13507888	-	MPN149	-	hypothetical protein
150	 52.59	+2	197982..198656	+	224	13507889	-	MPN150	-	hypothetical protein
151	 38.31	0	199139..199540	+	133	13507890	-	MPN151	-	hypothetical protein
152	 37.86	0	199823..202207	+	794	13507891	-	MPN152	-	hypothetical protein
153	 40.66	0	202383..205724	+	1113	13507892	-	MPN153	-	hypothetical protein
154	 43.01	0	205801..207423	+	540	13507893	nusA	MPN154	-	transcription elongation factor NusA
155	 45.52	+1	207704..209557	+	617	13507894	infB	MPN155	-	translation initiation factor IF-2
156	 41.31	0	209560..209910	+	116	13507895	rbfA	MPN156	-	ribosome binding factor A
157	 43.42	0	209926..211134	+	402	13507896	-	MPN157	-	hypothetical protein
158	 45.06	0	211147..211956	+	269	13507897	yaaC	MPN158	-	riboflavin kinase (flavokinase)/FMN adenylyltransferase (FAD pyrophosphorylase) (FAD synthetase); bifunctional
159	 42.59	0	211982..213256	+	424	13507898	hlyC	MPN159	-	tlyC homolog, hemolysin activity doubtful
160	 41.18	0	213243..214376	+	377	13507899	-	MPN160	-	hypothetical protein
161	 37.22	0	214530..215867	+	445	13507900	-	MPN161	-	hypothetical protein
162	 38.94	0	215989..216951	+	320	13507901	-	MPN162	-	hypothetical protein
163	 34.51	-1	217198..217536	+	112	13507902	-	MPN163	-	hypothetical protein
164	 43.12	0	217630..217956	+	108	13507903	rpsJ	MPN164	-	30S ribosomal protein S10
165	 44.21	0	217970..218833	+	287	13507904	rplC	MPN165	-	50S ribosomal protein L3
166	 42.57	0	218833..219471	+	212	13507905	rplD	MPN166	-	50S ribosomal protein L4
167	 41.04	0	219474..220187	+	237	13507906	rplW	MPN167	-	50S ribosomal protein L23
168	 47.69	+1	220187..221050	+	287	13507907	rplB	MPN168	-	50S ribosomal protein L2
169	 44.32	0	221050..221313	+	87	13507908	rpsS	MPN169	-	30S ribosomal protein S19
170	 44.86	0	221240..221794	+	184	13507909	rplV	MPN170	-	50S ribosomal protein L22
171	 47.08	+1	221796..222617	+	273	13507910	rpsC	MPN171	-	30S ribosomal protein S3
40.26	MEAN

4.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.