IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
934	 29.68	+1	1253728..1254930	-	400	26554386	-	MYPE9370	-	phosphate binding protein PstS
935	 24.63	0	1255108..1258371	-	1087	26554387	-	MYPE9380	-	methionyl-tRNA synthetase
936	 22.51	-1	1258364..1261099	-	911	26554388	-	MYPE9390	-	phosphoenolpyruvate carboxylase
937	 30.39	+1	1261211..1262299	+	362	26554389	-	MYPE9400	-	peptidoglycan acetylation
938	 23.86	0	1262302..1262892	+	196	26554390	-	MYPE9410	-	hypothetical protein
939	 23.92	0	1262904..1263986	+	360	26554391	-	MYPE9420	-	nicotinate phosphoribosyltransferase
940	 26.00	0	1263983..1265659	-	558	26554392	-	MYPE9430	-	hypothetical protein
941	 21.68	-1	1265831..1266388	-	185	26554393	-	MYPE9440	-	nucleotidyltransferase
942	 28.43	0	1266376..1267374	-	332	26554394	-	MYPE9450	-	phosphoribosylpyrophosphate synthetase
943	 24.13	0	1267458..1268120	-	220	26554395	-	MYPE9460	-	ribonuclease H-related protein
944	 25.57	0	1268169..1268954	-	261	26554396	-	MYPE9470	-	hypothetical protein
945	 20.34	-1	1269032..1269847	-	271	26554397	-	MYPE9480	-	choline kinase
946	 29.85	+1	1269938..1271803	-	621	26554398	-	MYPE9490	-	HSP70 family molecular chaperone DnaK
947	 28.21	0	1271891..1272748	+	285	26554399	-	MYPE9500	-	oxidoreductase
948	 20.11	-1	1272807..1273169	-	120	26554400	-	MYPE9510	-	hypothetical protein
949	 23.90	0	1273174..1275345	-	723	26554401	-	MYPE9520	-	hypothetical protein
950	 23.74	0	1275510..1276583	+	357	26554402	-	MYPE9530	-	DNA polymerase III
951	 23.88	0	1276623..1277786	-	387	26554403	-	MYPE9540	-	CDP-diglyceride synthetase
952	 25.52	0	1277868..1278545	-	225	26554404	-	MYPE9550	-	undecaprenyl diphosphate synthase
953	 25.18	0	1278547..1279098	-	183	26554405	-	MYPE9560	-	ribosome recycling factor
954	 25.68	0	1279127..1280080	-	317	26554406	-	MYPE9570	-	uridylate kinase
955	 29.12	0	1280134..1281012	-	292	26554407	tsf	MYPE9580	-	elongation factor Ts
956	 19.88	-1	1281224..1282204	-	326	26554408	-	MYPE9600	-	hypothetical protein
957	 17.72	-2	1282338..1282670	-	110	26554409	-	MYPE9610	-	hypothetical protein
958	 25.72	0	1282913..1284121	-	402	26554410	-	MYPE9620	-	transposase
959	 21.79	-1	1284157..1284693	-	178	26554411	-	MYPE9630	-	hypothetical protein
960	 31.96	+1	1284919..1285866	-	315	26554412	-	MYPE9640	-	L-lactate dehydrogenase
961	 22.96	0	1285856..1286308	-	150	26554413	-	MYPE9650	-	putative lipopolysaccharide biosynthesis enzyme KdtB
962	 26.90	0	1286361..1287464	-	367	26554414	rpsB	MYPE9660	-	30S ribosomal protein S2
963	 21.18	-1	1287783..1288424	+	213	26554415	-	MYPE9670	-	transcription regulation proteins GntR
964	 29.00	0	1288515..1290821	+	768	26554416	-	MYPE9680	-	PTS system sucrose-specific IIABC component
965	 24.10	0	1290867..1292231	+	454	26554417	-	MYPE9690	-	sucrose-6-phosphate hydrolase
966	 26.33	0	1292235..1293119	+	294	26554418	-	MYPE9700	-	glucose kinase or transcriptional regulator
967	 24.17	0	1293280..1294512	+	410	26554419	-	MYPE9710	-	hypothetical protein
968	 40.26	+2	1294694..1295083	-	129	26554420	-	MYPE9720	-	hypothetical protein
969	 27.49	0	1295149..1295319	-	56	26554421	-	MYPE9730	-	hypothetical protein
970	 23.00	0	1295429..1296154	-	241	26554422	truA	MYPE9740	-	tRNA pseudouridine synthase A
971	 26.13	0	1296165..1297358	-	397	26554423	-	MYPE9750	-	cobalt transport membrane protein
972	 24.49	0	1297444..1298664	-	406	26554424	-	MYPE9760	-	cobalt transporter ATP-binding subunit
973	 25.93	0	1298649..1299512	-	287	26554425	-	MYPE9770	-	cobalt transporter ATP-binding subunit
974	 26.25	0	1299733..1300749	+	338	26554426	-	MYPE9780	-	IS1630-like transposase
975	 23.76	0	1301030..1302136	-	368	26554427	-	MYPE9790	-	hypothetical protein
976	 25.37	0	1302153..1303433	-	426	26554428	-	MYPE9800	-	cytosine-specific DNA methylase
977	 21.30	-1	1303628..1304566	-	312	26554429	-	MYPE9810	-	hypothetical protein
978	 26.45	0	1304594..1306759	-	721	26554430	-	MYPE9820	-	hypothetical protein
979	 26.16	0	1306761..1308293	-	510	26554431	-	MYPE9830	-	hypothetical protein
980	 23.29	0	1308740..1308988	-	82	26554432	-	MYPE9840	-	hypothetical protein
981	 29.24	0	1309225..1309395	-	56	26554433	-	MYPE9850	-	hypothetical protein
982	 26.90	0	1309632..1309973	-	113	26554434	-	MYPE9860	-	hypothetical protein
983	 21.61	-1	1310322..1311140	-	272	26554435	-	MYPE9870	-	short-chain alcohol dehydrogenase family enzyme
984	 19.61	-1	1311133..1311744	-	203	26554436	-	MYPE9880	-	hypothetical protein
985	 26.46	0	1311717..1313186	-	489	26554437	-	MYPE9890	-	aminopeptidase C
986	 23.75	0	1313188..1314732	-	514	26554438	-	MYPE9900	-	aminopeptidase C
987	 28.06	0	1314801..1315160	-	119	26554439	rplQ	MYPE9910	-	50S ribosomal protein L17
988	 27.31	0	1315171..1316166	-	331	26554440	-	MYPE9920	-	DNA-directed RNA polymerase subunit alpha
989	 34.95	+2	1316181..1316552	-	123	26554441	-	MYPE9930	-	30S ribosomal protein S11
990	 28.53	0	1316568..1316942	-	124	26554442	rpsM	MYPE9940	-	30S ribosomal protein S13
991	 31.51	+1	1317093..1317311	-	72	26554443	-	MYPE9950	-	translation initiation factor IF-1
992	 30.90	+1	1317319..1318059	-	246	26554444	-	MYPE9960	-	methionine aminopeptidase
993	 26.23	0	1318062..1318709	-	215	26554445	-	MYPE9970	-	adenylate kinase
994	 31.58	+1	1318721..1320142	-	473	26554446	secY	MYPE9980	-	preprotein translocase subunit SecY
995	 28.38	0	1320166..1320609	-	147	26554447	rplO	MYPE9990	-	50S ribosomal protein L15
996	 29.65	+1	1320613..1321317	-	234	26554448	rpsE	MYPE10000	-	30S ribosomal protein S5
997	 27.50	0	1321339..1321698	-	119	26554449	rplR	MYPE10010	-	50S ribosomal protein L18
998	 30.62	+1	1321714..1322265	-	183	26554450	rplF	MYPE10020	-	50S ribosomal protein L6
999	 25.76	0	1322276..1322671	-	131	26554451	rpsH	MYPE10030	-	30S ribosomal protein S8
1000	 32.26	+1	1322688..1322873	-	61	26554452	rpsN	MYPE10040	-	30S ribosomal protein S14
1001	 27.13	0	1322875..1323438	-	187	26554453	rplE	MYPE10050	-	50S ribosomal protein L5
1002	 27.78	0	1323447..1323770	-	107	26554454	-	MYPE10060	-	ribosomal protein L24
1003	 33.33	+2	1323783..1324151	-	122	26554455	rplN	MYPE10070	-	50S ribosomal protein L14
1004	 28.26	0	1324182..1324457	-	91	26554456	rpsQ	MYPE10080	-	30S ribosomal protein S17
1005	 30.22	+1	1324476..1325729	-	417	26554457	-	MYPE10090	-	ribosomal protein S3
1006	 34.29	+2	1325732..1326466	-	244	26554458	-	MYPE10100	-	ribosomal protein L29
1007	 34.52	+2	1326453..1326875	-	140	26554459	rplP	MYPE10110	-	50S ribosomal protein L16
1008	 29.92	+1	1326898..1327923	-	341	26554460	-	MYPE10120	-	fused 50S ribosomal protein L21/unknown domain-containing protein
1009	 29.91	+1	1327941..1328174	-	77	26554461	-	MYPE10130	-	ribosomal protein S19
1010	 33.33	+2	1328232..1329071	-	279	26554462	rplB	MYPE10150	-	50S ribosomal protein L2
1011	 25.66	0	1329106..1329522	-	138	26554463	rplW	MYPE10160	-	50S ribosomal protein L23
1012	 26.79	0	1329522..1330163	-	213	26554464	rplD	MYPE10170	-	50S ribosomal protein L4
1013	 32.80	+1	1330163..1331095	-	310	161723281	rplC	MYPE10180	-	50S ribosomal protein L3
1014	 29.74	+1	1331115..1331504	-	129	26554466	rpsJ	MYPE10190	-	30S ribosomal protein S10
1015	 24.79	0	1331694..1332524	-	276	26554467	-	MYPE10200	-	haloacid dehalogenase-like hydrolase
1016	 23.57	0	1332546..1333313	-	255	26554468	-	MYPE10210	-	transcriptional regulator
1017	 24.05	0	1333337..1333993	-	218	26554469	-	MYPE10220	-	ribonuclease HII
1018	 27.94	0	1334047..1334565	-	172	26554470	-	MYPE10230	-	adenine phosphoribosyltransferase
1019	 28.61	0	1334575..1337958	-	1127	26554471	-	MYPE10240	-	protein-export membrane protein SecD
1020	 31.02	+1	1338074..1340542	-	822	26554472	-	MYPE10250	-	cell division protein FtsH
1021	 26.03	0	1340596..1341129	-	177	26554473	-	MYPE10260	-	hypoxanthine-guanine phosphoribosyltransferase
1022	 22.09	-1	1341227..1341724	-	165	26554474	-	MYPE10270	-	putative enzyme of deoxy-xylulose pathway YgbB
1023	 24.85	0	1341772..1342632	-	286	26554475	-	MYPE10280	-	ABC transporter ATP-binding protein
1024	 27.43	0	1342637..1347094	-	1485	26554476	-	MYPE10290	-	ABC transporter membrane protein
1025	 29.79	+1	1347248..1347868	+	206	26554477	-	MYPE10300	-	uracil phosphoribosyltransferase
1026	 29.11	0	1347932..1349068	-	378	26554478	-	MYPE10310	-	guanosine 5'-monophosphate oxidoreductase
1027	 29.26	0	1349097..1349759	-	220	26554479	-	MYPE10320	-	thymidine kinase
1028	 25.87	0	1349771..1350868	-	365	26554480	-	MYPE10330	-	translation-associated GTPase
1029	 31.09	+1	1350944..1351834	-	296	26554481	-	MYPE10340	-	fructose-bisphosphate aldolase
1030	 28.65	0	1351913..1352425	-	170	26554482	-	MYPE10350	-	DNA-directed RNA polymerase subunit delta
1031	 23.35	0	1352460..1353731	-	423	26554483	-	MYPE10360	-	hypothetical protein
1032	 27.12	0	1353732..1355195	-	487	26554484	gltX	MYPE10370	-	glutamyl-tRNA synthetase
1033	 18.07	-2	1355211..1355996	-	261	26554485	-	MYPE10380	-	hypothetical protein
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.