IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
863	 27.12	0	1158951..1159916	+	321	26554315	-	MYPE8610	-	O-sialoglycoprotein endopeptidase
864	 24.15	0	1160388..1161509	+	373	26554316	-	MYPE8620	-	hypothetical protein
865	 22.61	-1	1161493..1162005	+	170	26554317	-	MYPE8630	-	hypothetical protein
866	 31.92	+1	1162174..1163937	-	587	26554318	-	MYPE8640	-	permease
867	 22.09	-1	1164167..1165153	+	328	26554319	-	MYPE8650	-	lipoate protein ligase A
868	 26.01	0	1165989..1167953	-	654	26554320	-	MYPE8660	-	Trk-type cation transport protein
869	 23.70	0	1168261..1168644	-	127	26554321	-	MYPE8670	-	hypothetical protein
870	 22.53	-1	1168840..1170135	-	431	26554322	-	MYPE8680	-	hypothetical protein
871	 24.86	0	1170274..1171866	+	530	26554323	-	MYPE8690	-	formate-tetrahydrofolate ligase
872	 27.20	0	1171921..1173828	-	635	26554324	-	MYPE8700	-	end peptidase
873	 25.35	0	1173952..1175967	-	671	26554325	-	MYPE8710	-	heavy-metal transporting P-type ATPase
874	 18.06	-2	1176080..1176295	-	71	26554326	-	MYPE8720	-	heavy-metal transporting ATPase, partial
875	 23.13	0	1176403..1176990	-	195	26554327	-	MYPE8730	-	hypothetical protein
876	 26.52	0	1176983..1179358	-	791	26554328	-	MYPE8750	-	oligopeptide ABC transporter ATP-binding protein
877	 28.21	0	1179372..1180892	-	506	26554329	-	MYPE8760	-	oligopeptide ABC transporter ATP-binding protein
878	 30.28	+1	1180895..1182073	-	392	26554330	-	MYPE8770	-	oligopeptide ABC transporter permease protein
879	 27.71	0	1182077..1183321	-	414	26554331	-	MYPE8780	-	oligopeptide ABC transporter permease protein
880	 16.37	-2	1183561..1183731	-	56	26554332	-	MYPE8790	-	hypothetical protein
881	 21.90	-1	1184312..1184827	+	171	26554333	-	MYPE8800	-	hypothetical protein
882	 27.90	0	1184942..1185364	-	140	26554334	-	MYPE8810	-	hypothetical protein
883	 25.56	0	1185818..1188520	-	900	26554335	ileS	MYPE8820	-	isoleucyl-tRNA synthetase
884	 23.81	0	1188699..1189685	-	328	26554336	-	MYPE8830	-	putative glycosyltransferase
885	 28.18	0	1189724..1190770	-	348	26554337	-	MYPE8840	-	transcription antitermination factor
886	 24.01	0	1190805..1191158	-	117	26554338	-	MYPE8850	-	preprotein translocase subunit SecE
887	 21.67	-1	1191716..1192675	+	319	26554339	-	MYPE8860	-	hypothetical protein
888	 29.00	0	1192810..1194078	-	422	26554340	-	MYPE8870	-	hypothetical protein
889	 22.97	0	1194198..1194911	-	237	26554341	-	MYPE8880	-	hypothetical protein
890	 27.25	0	1194933..1196921	-	662	26554342	-	MYPE8890	-	excinuclease ABC subunit B
891	 27.21	0	1196989..1197804	-	271	26554343	-	MYPE8900	-	hypothetical protein
892	 24.63	0	1197903..1200119	-	738	26554344	-	MYPE8910	-	ATP-dependent DNA helicase
893	 21.18	-1	1200122..1200919	-	265	26554345	-	MYPE8920	-	hypothetical protein
894	 20.73	-1	1200933..1201892	-	319	26554346	-	MYPE8930	-	glycosyltransferase
895	 23.76	0	1201998..1202300	-	100	26554347	-	MYPE8940	-	hypothetical protein
896	 28.75	0	1202326..1203678	-	450	26554348	-	MYPE8950	-	leucyl aminopeptidase
897	 23.45	0	1203839..1204546	-	235	26554349	-	MYPE8960	-	heat shock protein GrpE
898	 32.73	+1	1204550..1205716	-	388	26554350	-	MYPE8970	-	heat shock protein DnaJ
899	 25.11	0	1206125..1206586	+	153	26554351	-	MYPE8980	-	phosphotyrosine protein phosphatase
900	 29.49	0	1207053..1208093	-	346	26554352	-	MYPE8990	-	NADH-dependent flavin oxidoreductase
901	 27.01	0	1208453..1210129	-	558	26554353	-	MYPE9000	-	hypothetical protein
902	 21.84	-1	1210287..1210808	-	173	26554354	-	MYPE9010	-	hypothetical protein
903	 23.44	0	1210894..1211712	-	272	26554355	-	MYPE9020	-	hypothetical protein
904	 25.00	0	1211705..1212268	-	187	26554356	-	MYPE9030	-	cysteinyl-tRNA synthetase
905	 22.33	-1	1212412..1215537	-	1041	26554357	-	MYPE9040	-	helicase/SNF2 domain-containing protein
906	 23.73	0	1215586..1216449	-	287	26554358	-	MYPE9050	-	hypothetical protein
907	 26.77	0	1216451..1217578	-	375	26554359	-	MYPE9060	-	serine/threonine protein kinase
908	 21.71	-1	1217816..1218340	-	174	26554360	-	MYPE9070	-	hypothetical protein
909	 22.01	-1	1218609..1219076	-	155	26554361	-	MYPE9080	-	hypothetical protein
910	 22.22	-1	1219638..1220195	-	185	26554362	-	MYPE9090	-	hypothetical protein
911	 28.19	0	1220198..1223056	-	952	26554363	uvrA	MYPE9100	-	excinuclease ABC subunit A
912	 22.43	-1	1223114..1225057	-	647	26554364	-	MYPE9110	-	hypothetical protein
913	 26.31	0	1225077..1225574	-	165	26554365	-	MYPE9120	-	flavodoxin FldA
914	 27.87	0	1225787..1226152	-	121	26554366	-	MYPE9130	-	hypothetical protein
915	 30.75	+1	1226351..1226698	-	115	26554367	rplT	MYPE9150	-	50S ribosomal protein L20
916	 26.12	0	1226940..1227452	-	170	26554368	infC	MYPE9160	-	translation initiation factor IF-3
917	 26.00	0	1227840..1232216	-	1458	26554369	-	MYPE9170	-	DNA polymerase III subunit alpha
918	 28.21	0	1232379..1232573	+	64	26554370	rpsU	MYPE9180	-	30S ribosomal protein S21
919	 23.17	0	1232631..1232876	-	81	26554371	-	MYPE9190	-	hypothetical protein
920	 33.33	+2	1232950..1233129	-	59	26554372	-	MYPE9200	-	ribosomal protein L32
921	 27.07	0	1238420..1241167	-	915	26554373	-	MYPE9240	-	hypothetical protein
922	 26.84	0	1241422..1241991	+	189	26554374	-	MYPE9250	-	hypothetical protein
923	 23.70	0	1242034..1244337	-	767	26554375	pheT	MYPE9260	-	phenylalanyl-tRNA synthetase subunit beta
924	 24.95	0	1244414..1245439	-	341	26554376	pheS	MYPE9270	-	phenylalanyl-tRNA synthetase subunit alpha
925	 24.46	0	1245544..1246242	+	232	26554377	-	MYPE9280	-	tRNA pseudouridine 5S synthase
926	 19.74	-1	1246239..1246694	-	151	26554378	-	MYPE9290	-	hypothetical protein
927	 21.75	-1	1246704..1247549	-	281	26554379	-	MYPE9300	-	putative lipase
928	 19.89	-1	1247562..1248431	-	289	26554380	-	MYPE9310	-	riboflavin kinase-FAD synthetase
929	 19.08	-2	1248566..1249021	-	151	26554381	-	MYPE9320	-	hypothetical protein
930	 30.22	+1	1249089..1250051	-	320	26554382	-	MYPE9330	-	thioredoxin reductase
931	 25.45	0	1250148..1250819	-	223	26554383	-	MYPE9340	-	phosphate transport system regulatory protein
932	 27.10	0	1250822..1251688	-	288	26554384	-	MYPE9350	-	phosphate ABC transporter permease PstB
933	 26.93	0	1251706..1253721	-	671	26554385	-	MYPE9360	-	phosphate ABC transporter permease PstA
934	 29.68	+1	1253728..1254930	-	400	26554386	-	MYPE9370	-	phosphate binding protein PstS
935	 24.63	0	1255108..1258371	-	1087	26554387	-	MYPE9380	-	methionyl-tRNA synthetase
936	 22.51	-1	1258364..1261099	-	911	26554388	-	MYPE9390	-	phosphoenolpyruvate carboxylase
937	 30.39	+1	1261211..1262299	+	362	26554389	-	MYPE9400	-	peptidoglycan acetylation
938	 23.86	0	1262302..1262892	+	196	26554390	-	MYPE9410	-	hypothetical protein
939	 23.92	0	1262904..1263986	+	360	26554391	-	MYPE9420	-	nicotinate phosphoribosyltransferase
940	 26.00	0	1263983..1265659	-	558	26554392	-	MYPE9430	-	hypothetical protein
941	 21.68	-1	1265831..1266388	-	185	26554393	-	MYPE9440	-	nucleotidyltransferase
942	 28.43	0	1266376..1267374	-	332	26554394	-	MYPE9450	-	phosphoribosylpyrophosphate synthetase
943	 24.13	0	1267458..1268120	-	220	26554395	-	MYPE9460	-	ribonuclease H-related protein
944	 25.57	0	1268169..1268954	-	261	26554396	-	MYPE9470	-	hypothetical protein
945	 20.34	-1	1269032..1269847	-	271	26554397	-	MYPE9480	-	choline kinase
946	 29.85	+1	1269938..1271803	-	621	26554398	-	MYPE9490	-	HSP70 family molecular chaperone DnaK
947	 28.21	0	1271891..1272748	+	285	26554399	-	MYPE9500	-	oxidoreductase
948	 20.11	-1	1272807..1273169	-	120	26554400	-	MYPE9510	-	hypothetical protein
949	 23.90	0	1273174..1275345	-	723	26554401	-	MYPE9520	-	hypothetical protein
950	 23.74	0	1275510..1276583	+	357	26554402	-	MYPE9530	-	DNA polymerase III
951	 23.88	0	1276623..1277786	-	387	26554403	-	MYPE9540	-	CDP-diglyceride synthetase
952	 25.52	0	1277868..1278545	-	225	26554404	-	MYPE9550	-	undecaprenyl diphosphate synthase
953	 25.18	0	1278547..1279098	-	183	26554405	-	MYPE9560	-	ribosome recycling factor
954	 25.68	0	1279127..1280080	-	317	26554406	-	MYPE9570	-	uridylate kinase
955	 29.12	0	1280134..1281012	-	292	26554407	tsf	MYPE9580	-	elongation factor Ts
956	 19.88	-1	1281224..1282204	-	326	26554408	-	MYPE9600	-	hypothetical protein
957	 17.72	-2	1282338..1282670	-	110	26554409	-	MYPE9610	-	hypothetical protein
958	 25.72	0	1282913..1284121	-	402	26554410	-	MYPE9620	-	transposase
959	 21.79	-1	1284157..1284693	-	178	26554411	-	MYPE9630	-	hypothetical protein
960	 31.96	+1	1284919..1285866	-	315	26554412	-	MYPE9640	-	L-lactate dehydrogenase
961	 22.96	0	1285856..1286308	-	150	26554413	-	MYPE9650	-	putative lipopolysaccharide biosynthesis enzyme KdtB
962	 26.90	0	1286361..1287464	-	367	26554414	rpsB	MYPE9660	-	30S ribosomal protein S2
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.