IslandPath Analysis: Mycoplasma penetrans HF-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.11   STD DEV: 3.47
Mycoplasma penetrans HF-2, complete genome - 1..1358633
1037 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
794	 25.85	0	1059326..1062826	-	1166	26554246	-	MYPE7910	-	hypothetical protein
795	 27.01	0	1062987..1066511	-	1174	26554247	-	MYPE7920	-	hypothetical protein
796	 27.06	0	1066617..1070204	-	1195	26554248	-	MYPE7930	-	hypothetical protein
797	 27.24	0	1070374..1071849	-	491	26554249	-	MYPE7940	-	hypothetical protein
798	 31.28	+1	1071969..1072748	+	259	26554250	-	MYPE7950	-	hypothetical protein
799	 26.70	0	1072817..1074052	-	411	26554251	-	MYPE7960	-	tyrosyl-tRNA synthetase
800	 27.59	0	1074084..1074884	-	266	26554252	-	MYPE7970	-	aldo/keto reductase
801	 27.75	0	1075160..1075678	+	172	26554253	-	MYPE7980	-	hypothetical protein
802	 20.73	-1	1075683..1076396	+	237	26554254	-	MYPE7990	-	glucose-inhibited division protein GidB
803	 20.57	-1	1076383..1077048	+	221	26554255	-	MYPE8000	-	hypothetical protein
804	 25.62	0	1077052..1078464	-	470	26554256	-	MYPE8010	-	prolyl-tRNA synthetase
805	 27.58	0	1078466..1079212	-	248	26554257	-	MYPE8020	-	hypothetical protein
806	 24.16	0	1079214..1080587	-	457	26554258	-	MYPE8030	-	ATP-dependent RNA helicase
807	 30.14	+1	1080743..1081462	-	239	26554259	-	MYPE8040	-	hypothetical protein
808	 24.14	0	1081507..1083735	-	742	26554260	-	MYPE8050	-	hypothetical protein
809	 22.44	-1	1083834..1084439	-	201	26554261	recR	MYPE8060	-	recombination protein RecR
810	 25.61	0	1084442..1084726	-	94	26554262	-	MYPE8070	-	hypothetical protein
811	 23.93	0	1084733..1087147	-	804	26554263	-	MYPE8080	-	DNA polymerase III subunits gamma and tau
812	 25.77	0	1087299..1088012	-	237	26554264	-	MYPE8090	-	hypothetical protein
813	 24.16	0	1088005..1088658	-	217	26554265	-	MYPE8100	-	hypothetical protein
814	 24.90	0	1088734..1089516	-	260	26554266	-	MYPE8110	-	hypothetical protein
815	 21.57	-1	1089527..1090861	-	444	26554267	trmE	MYPE8120	-	tRNA modification GTPase TrmE
816	 19.93	-1	1090864..1091691	-	275	26554268	-	MYPE8130	-	DNA polymerase III subunit delta'
817	 28.22	0	1091701..1092345	-	214	26554269	-	MYPE8140	-	thymidylate kinase
818	 28.92	0	1092593..1093408	-	271	26554270	-	MYPE8150	-	hypothetical protein
819	 30.16	+1	1093589..1095004	-	471	26554271	-	MYPE8160	-	phosphoglycerate kinase
820	 31.94	+1	1095027..1096028	-	333	26554272	-	MYPE8170	-	glyceraladehyde-3-phosphate dehydrogenase
821	 25.64	0	1096291..1097109	-	272	26554273	-	MYPE8180	-	integrase
822	 24.04	0	1097228..1098475	+	415	26554274	-	MYPE8190	-	type I restriction-modification system S subunit
823	 24.81	0	1098599..1100158	-	519	26554275	-	MYPE8200	-	type I restriction-modification system S subunit
824	 27.22	0	1100165..1101637	-	490	26554276	-	MYPE8210	-	type I restriction-modification system M subunit
825	 27.39	0	1101659..1103527	-	622	26554277	-	MYPE8220	-	type I restriction-modification system R subunit
826	 29.12	0	1103478..1103999	-	173	26554278	-	MYPE8230	-	type I restriction-modification system R subunit, partial
827	 26.42	0	1104359..1105471	-	370	26554279	-	MYPE8250	-	tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
828	 31.37	+1	1105765..1105917	+	50	26554280	-	MYPE8260	-	hypothetical protein
829	 28.92	0	1106271..1106678	+	135	26554281	-	MYPE8270	-	hypothetical protein
830	 29.23	0	1106884..1107273	+	129	26554282	-	MYPE8280	-	hypothetical protein
831	 29.89	+1	1107478..1107825	+	115	26554283	-	MYPE8290	-	hypothetical protein
832	 29.89	+1	1108030..1108377	+	115	26554284	-	MYPE8300	-	hypothetical protein
833	 31.99	+1	1108514..1109182	-	222	26554285	-	MYPE8310	-	hypothetical protein
834	 16.30	-2	1109345..1109749	-	134	26554286	-	MYPE8320	-	hypothetical protein
835	 27.80	0	1109781..1110683	-	300	26554287	-	MYPE8330	-	prolyl aminopeptidase
836	 22.44	-1	1110698..1111459	-	253	26554288	-	MYPE8340	-	hypothetical protein
837	 21.04	-1	1111461..1112135	-	224	26554289	-	MYPE8350	-	hypothetical protein
838	 28.12	0	1112116..1113399	-	427	26554290	-	MYPE8360	-	RNA polymerase sigma factor
839	 29.98	+1	1113592..1115022	-	476	26554291	-	MYPE8370	-	cell division protein FtsZ
840	 29.68	+1	1115598..1117076	-	492	26554292	-	MYPE8380	-	hypothetical protein
841	 28.88	0	1117210..1118805	-	531	26554293	-	MYPE8390	-	hypothetical protein
842	 27.33	0	1118942..1121821	-	959	26554294	-	MYPE8400	-	hypothetical protein
843	 24.37	0	1121987..1122979	-	330	26554295	-	MYPE8410	-	hypothetical protein
844	 27.14	0	1122982..1124451	-	489	26554296	-	MYPE8420	-	lysyl-tRNA synthetase
845	 26.45	0	1124580..1127846	-	1088	26554297	-	MYPE8430	-	hypothetical protein
846	 26.21	0	1128026..1131283	-	1085	26554298	-	MYPE8440	-	hypothetical protein
847	 26.08	0	1131560..1134814	-	1084	26554299	-	MYPE8450	-	hypothetical protein
848	 23.21	0	1134961..1138755	-	1264	26554300	-	MYPE8460	-	ATP/GTP-binding protein
849	 29.53	0	1138967..1139413	-	148	26554301	-	MYPE8470	-	hypothetical protein
850	 27.84	0	1139542..1140087	-	181	26554302	-	MYPE8480	-	hypothetical protein
851	 24.55	0	1140671..1143949	-	1092	26554303	-	MYPE8490	-	hypothetical protein
852	 25.55	0	1144066..1145286	-	406	26554304	-	MYPE8500	-	protease
853	 22.40	-1	1145289..1146221	-	310	26554305	-	MYPE8510	-	protease
854	 20.58	-1	1146206..1146793	-	195	26554306	-	MYPE8520	-	O-methyltransferase
855	 21.45	-1	1146810..1147238	-	142	26554307	-	MYPE8530	-	hypothetical protein
856	 24.35	0	1147222..1150014	-	930	26554308	alaS	MYPE8540	-	alanyl-tRNA synthetase
857	 27.20	0	1150643..1152241	+	532	26554309	-	MYPE8550	-	putative lipoprotein
858	 21.91	-1	1152322..1153800	+	492	26554310	-	MYPE8560	-	haloacid dehalogenase-like hydrolase
859	 25.60	0	1153801..1155585	+	594	26554311	-	MYPE8570	-	spermidine/putrescine transport ATP-binding protein PotA
860	 27.37	0	1155554..1156459	+	301	26554312	-	MYPE8580	-	spermidine/putrescine transport system permease PotB
861	 25.47	0	1156452..1157303	+	283	26554313	-	MYPE8590	-	spermidine/putrescine transport system permease PotC
862	 26.02	0	1157291..1158973	+	560	26554314	-	MYPE8600	-	putative lipoprotein
863	 27.12	0	1158951..1159916	+	321	26554315	-	MYPE8610	-	O-sialoglycoprotein endopeptidase
864	 24.15	0	1160388..1161509	+	373	26554316	-	MYPE8620	-	hypothetical protein
865	 22.61	-1	1161493..1162005	+	170	26554317	-	MYPE8630	-	hypothetical protein
866	 31.92	+1	1162174..1163937	-	587	26554318	-	MYPE8640	-	permease
867	 22.09	-1	1164167..1165153	+	328	26554319	-	MYPE8650	-	lipoate protein ligase A
868	 26.01	0	1165989..1167953	-	654	26554320	-	MYPE8660	-	Trk-type cation transport protein
869	 23.70	0	1168261..1168644	-	127	26554321	-	MYPE8670	-	hypothetical protein
870	 22.53	-1	1168840..1170135	-	431	26554322	-	MYPE8680	-	hypothetical protein
871	 24.86	0	1170274..1171866	+	530	26554323	-	MYPE8690	-	formate-tetrahydrofolate ligase
872	 27.20	0	1171921..1173828	-	635	26554324	-	MYPE8700	-	end peptidase
873	 25.35	0	1173952..1175967	-	671	26554325	-	MYPE8710	-	heavy-metal transporting P-type ATPase
874	 18.06	-2	1176080..1176295	-	71	26554326	-	MYPE8720	-	heavy-metal transporting ATPase, partial
875	 23.13	0	1176403..1176990	-	195	26554327	-	MYPE8730	-	hypothetical protein
876	 26.52	0	1176983..1179358	-	791	26554328	-	MYPE8750	-	oligopeptide ABC transporter ATP-binding protein
877	 28.21	0	1179372..1180892	-	506	26554329	-	MYPE8760	-	oligopeptide ABC transporter ATP-binding protein
878	 30.28	+1	1180895..1182073	-	392	26554330	-	MYPE8770	-	oligopeptide ABC transporter permease protein
879	 27.71	0	1182077..1183321	-	414	26554331	-	MYPE8780	-	oligopeptide ABC transporter permease protein
880	 16.37	-2	1183561..1183731	-	56	26554332	-	MYPE8790	-	hypothetical protein
881	 21.90	-1	1184312..1184827	+	171	26554333	-	MYPE8800	-	hypothetical protein
882	 27.90	0	1184942..1185364	-	140	26554334	-	MYPE8810	-	hypothetical protein
883	 25.56	0	1185818..1188520	-	900	26554335	ileS	MYPE8820	-	isoleucyl-tRNA synthetase
884	 23.81	0	1188699..1189685	-	328	26554336	-	MYPE8830	-	putative glycosyltransferase
885	 28.18	0	1189724..1190770	-	348	26554337	-	MYPE8840	-	transcription antitermination factor
886	 24.01	0	1190805..1191158	-	117	26554338	-	MYPE8850	-	preprotein translocase subunit SecE
887	 21.67	-1	1191716..1192675	+	319	26554339	-	MYPE8860	-	hypothetical protein
888	 29.00	0	1192810..1194078	-	422	26554340	-	MYPE8870	-	hypothetical protein
889	 22.97	0	1194198..1194911	-	237	26554341	-	MYPE8880	-	hypothetical protein
890	 27.25	0	1194933..1196921	-	662	26554342	-	MYPE8890	-	excinuclease ABC subunit B
891	 27.21	0	1196989..1197804	-	271	26554343	-	MYPE8900	-	hypothetical protein
892	 24.63	0	1197903..1200119	-	738	26554344	-	MYPE8910	-	ATP-dependent DNA helicase
893	 21.18	-1	1200122..1200919	-	265	26554345	-	MYPE8920	-	hypothetical protein
26.11	MEAN

3.47	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.